Wall clock time and date at job start Tue Mar 31 2020 13:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42902 * 113.99794 * 2 1 4 4 C 1.52992 * 109.47288 * 60.00103 * 3 2 1 5 5 C 1.52999 * 109.46897 * 299.99572 * 3 2 1 6 6 C 1.53007 * 109.47000 * 180.02562 * 3 2 1 7 7 N 1.46497 * 109.47047 * 64.99945 * 6 3 2 8 8 C 1.34777 * 119.99852 * 180.02562 * 7 6 3 9 9 O 1.21288 * 120.00179 * 359.97438 * 8 7 6 10 10 C 1.50694 * 120.00224 * 179.97438 * 8 7 6 11 11 H 1.09005 * 115.56827 * 325.72094 * 10 8 7 12 12 C 1.53058 * 117.50479 * 111.43827 * 10 8 7 13 13 C 1.52730 * 117.50768 * 179.97438 * 10 8 7 14 14 C 1.53218 * 117.84488 * 144.78398 * 13 10 8 15 15 C 1.53260 * 108.62110 * 162.99665 * 14 13 10 16 16 N 1.46803 * 109.45022 * 55.59618 * 15 14 13 17 17 C 1.46906 * 111.00388 * 170.80287 * 16 15 14 18 18 C 1.50703 * 109.46573 * 65.03661 * 17 16 15 19 19 H 1.08007 * 120.00181 * 354.97203 * 18 17 16 20 20 C 1.37878 * 119.99861 * 174.96443 * 18 17 16 21 21 N 1.31515 * 119.99803 * 0.28037 * 20 18 17 22 22 Si 1.86795 * 119.99939 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47422 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46880 * 120.00709 * 22 20 18 25 25 H 1.48504 * 109.47488 * 240.00302 * 22 20 18 26 26 C 1.46808 * 111.56935 * 295.17488 * 16 15 14 27 27 C 1.53215 * 117.84929 * 0.27793 * 13 10 8 28 28 H 1.08998 * 109.47232 * 299.99777 * 1 2 3 29 29 H 1.09001 * 109.47216 * 60.00605 * 1 2 3 30 30 H 1.09009 * 109.46849 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46996 * 180.02562 * 4 3 2 32 32 H 1.09007 * 109.47214 * 299.99834 * 4 3 2 33 33 H 1.08992 * 109.47584 * 59.99641 * 4 3 2 34 34 H 1.08997 * 109.47465 * 300.00464 * 5 3 2 35 35 H 1.09007 * 109.46890 * 60.00603 * 5 3 2 36 36 H 1.08997 * 109.47226 * 180.02562 * 5 3 2 37 37 H 1.08996 * 109.47004 * 304.99859 * 6 3 2 38 38 H 1.08998 * 109.46978 * 184.99820 * 6 3 2 39 39 H 0.96999 * 120.00226 * 359.97438 * 7 6 3 40 40 H 1.08991 * 117.50708 * 0.02562 * 12 10 8 41 41 H 1.09000 * 117.53414 * 214.93066 * 12 10 8 42 42 H 1.08991 * 109.61305 * 43.25145 * 14 13 10 43 43 H 1.09001 * 109.61336 * 282.73181 * 14 13 10 44 44 H 1.09006 * 109.47614 * 295.60428 * 15 14 13 45 45 H 1.09002 * 109.48379 * 175.59701 * 15 14 13 46 46 H 1.08994 * 109.46920 * 305.04324 * 17 16 15 47 47 H 1.08998 * 109.47048 * 185.03647 * 17 16 15 48 48 H 0.97000 * 120.00246 * 359.72546 * 21 20 18 49 49 H 1.09005 * 109.47262 * 184.81594 * 26 16 15 50 50 H 1.08997 * 109.48027 * 304.83563 * 26 16 15 51 51 H 1.09005 * 109.60856 * 316.74912 * 27 13 10 52 52 H 1.08998 * 109.61014 * 77.08973 * 27 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.5587 2.0647 1.2492 5 6 1.5587 2.0647 -1.2493 6 6 3.5354 1.1847 -0.0006 7 7 3.9756 0.5645 -1.2527 8 6 5.2882 0.3557 -1.4763 9 8 6.1050 0.6817 -0.6410 10 6 5.7411 -0.2828 -2.7639 11 1 5.0700 -1.0359 -3.1771 12 6 6.5160 0.5919 -3.7524 13 6 7.2415 -0.4921 -2.9580 14 6 7.6976 -1.7457 -3.7117 15 6 9.1504 -1.5471 -4.1576 16 7 9.9816 -1.2319 -2.9894 17 6 11.4085 -1.2491 -3.3383 18 6 11.6987 -0.1434 -4.3204 19 1 10.8904 0.4549 -4.7144 20 6 12.9961 0.1044 -4.7159 21 7 13.9797 -0.6277 -4.2402 22 14 13.3558 1.4743 -5.9337 23 1 12.0856 2.1400 -6.3193 24 1 14.2645 2.4677 -5.3070 25 1 14.0034 0.9047 -7.1426 26 6 9.6025 0.0526 -2.3880 27 6 8.1781 -0.0456 -1.8308 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 2.0017 3.0606 1.2489 32 1 0.4721 2.1508 1.2492 33 1 1.8803 1.5239 2.1391 34 1 1.8803 1.5237 -2.1392 35 1 0.4720 2.1507 -1.2493 36 1 2.0023 3.0603 -1.2496 37 1 3.8514 0.5683 0.8409 38 1 3.9784 2.1766 0.0889 39 1 3.3224 0.3034 -1.9205 40 1 6.6986 1.6289 -3.4710 41 1 6.3553 0.4144 -4.8157 42 1 7.0642 -1.8980 -4.5855 43 1 7.6322 -2.6122 -3.0537 44 1 9.2021 -0.7259 -4.8726 45 1 9.5148 -2.4609 -4.6270 46 1 11.6611 -2.2095 -3.7874 47 1 12.0045 -1.1009 -2.4378 48 1 13.7929 -1.3394 -3.6082 49 1 10.2931 0.2934 -1.5798 50 1 9.6430 0.8349 -3.1460 51 1 7.8631 0.9291 -1.4579 52 1 8.1488 -0.7741 -1.0206 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274032717.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:23 Heat of formation + Delta-G solvation = -85.272634 kcal Electronic energy + Delta-G solvation = -28447.509400 eV Core-core repulsion = 24639.531635 eV Total energy + Delta-G solvation = -3807.977765 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.57329 -40.31817 -39.38273 -37.33684 -35.88304 -34.87464 -33.33400 -31.84039 -31.25678 -28.66803 -28.35824 -27.49146 -26.93472 -24.96564 -24.42126 -24.10020 -22.53204 -21.33765 -20.84198 -19.84311 -18.69645 -18.15795 -17.65223 -17.03840 -16.58189 -16.26683 -16.10087 -16.03165 -15.95774 -15.68288 -15.65446 -15.19827 -14.68038 -14.52804 -14.21390 -14.04386 -13.91267 -13.68828 -13.58407 -13.39549 -13.22196 -13.16123 -13.01232 -12.88908 -12.73231 -12.50757 -12.29090 -12.26212 -12.23794 -12.00624 -11.96654 -11.55349 -11.44606 -11.26262 -10.89464 -10.76646 -10.59068 -10.57558 -10.38257 -10.08106 -8.99913 -8.62196 -6.42548 1.47742 1.49521 1.57409 1.73177 2.13090 2.52241 2.72906 2.84012 3.12308 3.33389 3.60646 3.63455 3.69473 3.84759 3.89170 3.95480 3.99238 4.12301 4.38988 4.41714 4.45734 4.52087 4.54151 4.59949 4.63199 4.67063 4.67814 4.71668 4.78343 4.82994 4.84580 4.90035 4.91064 4.91748 4.99025 5.01644 5.04356 5.05977 5.16922 5.19950 5.24050 5.29019 5.35745 5.40163 5.53430 5.83300 5.98255 6.25223 6.43615 6.48224 6.50312 6.55514 7.28854 7.40383 8.68428 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.027657 B = 0.002252 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.176271 B =12429.231206 C =12600.594350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.399 6.399 3 C 0.103 3.897 4 C -0.176 4.176 5 C -0.178 4.178 6 C 0.134 3.866 7 N -0.708 5.708 8 C 0.537 3.463 9 O -0.572 6.572 10 C -0.169 4.169 11 H 0.154 0.846 12 C -0.135 4.135 13 C -0.103 4.103 14 C -0.065 4.065 15 C 0.069 3.931 16 N -0.541 5.541 17 C 0.183 3.817 18 C -0.626 4.626 19 H 0.049 0.951 20 C -0.034 4.034 21 N -0.935 5.935 22 Si 1.120 2.880 23 H -0.273 1.273 24 H -0.280 1.280 25 H -0.276 1.276 26 C 0.074 3.926 27 C -0.056 4.056 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.080 0.920 39 H 0.414 0.586 40 H 0.088 0.912 41 H 0.127 0.873 42 H 0.097 0.903 43 H 0.070 0.930 44 H 0.021 0.979 45 H 0.058 0.942 46 H 0.001 0.999 47 H -0.006 1.006 48 H 0.256 0.744 49 H 0.039 0.961 50 H 0.018 0.982 51 H 0.078 0.922 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.875 4.842 4.477 34.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.319 6.319 3 C 0.064 3.936 4 C -0.234 4.234 5 C -0.235 4.235 6 C 0.010 3.990 7 N -0.361 5.361 8 C 0.325 3.675 9 O -0.452 6.452 10 C -0.190 4.190 11 H 0.171 0.829 12 C -0.172 4.172 13 C -0.103 4.103 14 C -0.103 4.103 15 C -0.060 4.060 16 N -0.264 5.264 17 C 0.056 3.944 18 C -0.664 4.664 19 H 0.067 0.933 20 C -0.233 4.233 21 N -0.572 5.572 22 Si 0.942 3.058 23 H -0.198 1.198 24 H -0.205 1.205 25 H -0.201 1.201 26 C -0.054 4.054 27 C -0.093 4.093 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.251 0.749 40 H 0.106 0.894 41 H 0.145 0.855 42 H 0.116 0.884 43 H 0.088 0.912 44 H 0.039 0.961 45 H 0.076 0.924 46 H 0.019 0.981 47 H 0.012 0.988 48 H 0.066 0.934 49 H 0.058 0.942 50 H 0.037 0.963 51 H 0.097 0.903 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -32.101 5.291 4.631 32.862 hybrid contribution -0.810 -0.334 0.442 0.982 sum -32.911 4.957 5.073 33.667 Atomic orbital electron populations 1.22975 0.79903 1.03573 1.01235 1.87986 1.21280 1.27395 1.95259 1.21710 0.91205 0.84051 0.96643 1.22354 1.03088 1.01170 0.96780 1.22419 1.02999 1.01132 0.96958 1.21352 0.92519 0.98525 0.86624 1.45797 1.06879 1.62589 1.20827 1.20053 0.82322 0.77563 0.87568 1.90692 1.53446 1.52967 1.48055 1.22334 0.95996 1.04714 0.95911 0.82871 1.23120 1.00455 0.95845 0.97771 1.21419 0.90779 0.98587 0.99546 1.21215 0.94021 0.95371 0.99668 1.21885 0.93448 0.99240 0.91386 1.62177 1.03910 1.31084 1.29254 1.19580 0.86090 0.95006 0.93700 1.22809 0.95520 1.19247 1.28871 0.93277 1.27329 0.92696 1.02610 1.00631 1.70854 1.34769 1.20767 1.30796 0.82898 0.76003 0.72874 0.74074 1.19804 1.20550 1.20131 1.21862 0.96423 0.90252 0.96891 1.21175 0.91168 1.01600 0.95382 0.92909 0.92439 0.89128 0.90240 0.90169 0.92119 0.91510 0.90359 0.90642 0.92678 0.90163 0.74856 0.89353 0.85530 0.88425 0.91167 0.96060 0.92352 0.98094 0.98751 0.93448 0.94202 0.96327 0.90349 0.93198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 10.21 113.37 1.16 1.31 16 2 O -0.40 -5.68 10.29 -148.98 -1.53 -7.22 16 3 C 0.10 1.22 0.80 -10.79 -0.01 1.21 16 4 C -0.18 -1.62 8.25 71.98 0.59 -1.03 16 5 C -0.18 -1.45 8.02 71.98 0.58 -0.87 16 6 C 0.13 2.33 4.85 86.38 0.42 2.74 16 7 N -0.71 -12.76 5.19 -463.06 -2.40 -15.17 16 8 C 0.54 13.47 7.59 87.66 0.67 14.14 16 9 O -0.57 -19.36 13.13 -3.05 -0.04 -19.40 16 10 C -0.17 -3.69 5.93 -11.61 -0.07 -3.76 16 11 H 0.15 2.33 8.14 -2.38 -0.02 2.31 16 12 C -0.13 -3.16 9.62 30.52 0.29 -2.86 16 13 C -0.10 -3.03 2.01 -52.22 -0.11 -3.13 16 14 C -0.07 -1.92 5.87 30.75 0.18 -1.74 16 15 C 0.07 2.74 5.08 86.41 0.44 3.18 16 16 N -0.54 -25.38 4.78 -900.21 -4.30 -29.68 16 17 C 0.18 10.23 4.45 85.56 0.38 10.61 16 18 C -0.63 -36.45 7.79 25.60 0.20 -36.25 16 19 H 0.05 2.85 5.93 -2.91 -0.02 2.83 16 20 C -0.03 -2.03 5.46 84.65 0.46 -1.56 16 21 N -0.93 -59.11 13.65 21.45 0.29 -58.81 16 22 Si 1.12 51.77 29.90 68.60 2.05 53.82 16 23 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 24 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 26 C 0.07 3.33 4.99 86.41 0.43 3.76 16 27 C -0.06 -2.08 4.32 30.75 0.13 -1.94 16 28 H 0.05 0.33 6.42 -2.39 -0.02 0.32 16 29 H 0.06 0.31 6.42 -2.39 -0.02 0.30 16 30 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.08 0.51 6.54 -2.38 -0.02 0.49 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.07 0.54 6.57 -2.39 -0.02 0.52 16 35 H 0.08 0.43 6.54 -2.38 -0.02 0.42 16 36 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.41 5.38 6.99 -92.71 -0.65 4.73 16 40 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.10 2.16 8.08 -2.39 -0.02 2.14 16 43 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.02 0.91 6.96 -2.38 -0.02 0.89 16 45 H 0.06 2.35 8.01 -2.39 -0.02 2.33 16 46 H 0.00 0.06 8.03 -2.39 -0.02 0.04 16 47 H -0.01 -0.34 7.81 -2.39 -0.02 -0.36 16 48 H 0.26 16.48 7.19 -92.71 -0.67 15.82 16 49 H 0.04 1.90 8.08 -2.38 -0.02 1.88 16 50 H 0.02 0.88 6.85 -2.39 -0.02 0.87 16 51 H 0.08 3.00 6.00 -2.38 -0.01 2.99 16 52 H 0.05 1.99 8.11 -2.39 -0.02 1.97 16 Total: -1.00 -75.05 395.47 0.17 -74.88 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.36 Total: 17.77 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: 5.75 Total: -16.19 kcal Atomic # 7 Polarization: -97.25 SS G_CDS: -6.41 Total: -103.66 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -1.57 Total: -26.62 kcal Atomic # 14 Polarization: 51.77 SS G_CDS: 2.05 Total: 53.82 kcal Total: -75.05 0.17 -74.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274032717.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.396 kcal (2) G-P(sol) polarization free energy of solvation -75.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds