Wall clock time and date at job start Tue Mar 31 2020 13:50:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47138 * 2 1 4 4 C 1.53001 * 109.47072 * 120.00098 * 2 1 3 5 5 N 1.46502 * 109.47143 * 174.99746 * 4 2 1 6 6 C 1.46194 * 118.77323 * 270.02005 * 5 4 2 7 7 C 1.52434 * 109.94724 * 162.44781 * 6 5 4 8 8 C 1.54122 * 110.12506 * 169.22769 * 7 6 5 9 9 C 1.55040 * 102.80802 * 140.95439 * 8 7 6 10 10 N 1.48584 * 103.28682 * 322.98014 * 9 8 7 11 11 C 1.46901 * 110.99781 * 159.44584 * 10 9 8 12 12 C 1.52992 * 109.47859 * 52.58089 * 11 10 9 13 13 C 1.52997 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99594 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99875 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47061 * 90.00257 * 18 16 14 20 20 H 1.48497 * 109.46906 * 209.99430 * 18 16 14 21 21 H 1.48498 * 109.47403 * 329.99876 * 18 16 14 22 22 C 1.48030 * 105.83684 * 38.91634 * 10 9 8 23 23 O 1.42568 * 110.11459 * 47.68912 * 7 6 5 24 24 C 1.43034 * 113.17743 * 293.26568 * 23 7 6 25 25 C 1.33850 * 118.76904 * 89.99682 * 5 4 2 26 26 O 1.21279 * 118.69952 * 2.45140 * 25 5 4 27 27 H 1.08995 * 109.46986 * 300.00148 * 1 2 3 28 28 H 1.09003 * 109.46641 * 60.00026 * 1 2 3 29 29 H 1.09001 * 109.47040 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46561 * 239.99758 * 2 1 3 31 31 H 1.09003 * 109.47333 * 299.99550 * 3 2 1 32 32 H 1.08995 * 109.47303 * 60.00046 * 3 2 1 33 33 H 1.09001 * 109.47139 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47064 * 54.99896 * 4 2 1 35 35 H 1.08997 * 109.46769 * 295.00078 * 4 2 1 36 36 H 1.09000 * 109.39086 * 42.29793 * 6 5 4 37 37 H 1.08995 * 109.39058 * 282.59164 * 6 5 4 38 38 H 1.08994 * 110.74168 * 259.28046 * 8 7 6 39 39 H 1.08991 * 110.74566 * 22.44380 * 8 7 6 40 40 H 1.09000 * 110.65846 * 204.52841 * 9 8 7 41 41 H 1.09004 * 110.66256 * 81.42689 * 9 8 7 42 42 H 1.09002 * 109.46980 * 292.57747 * 11 10 9 43 43 H 1.09001 * 109.46628 * 172.58169 * 11 10 9 44 44 H 1.09002 * 109.47103 * 59.99734 * 12 11 10 45 45 H 1.08998 * 109.46862 * 300.00546 * 12 11 10 46 46 H 1.09002 * 109.47153 * 59.99783 * 13 12 11 47 47 H 1.09001 * 109.46832 * 299.99974 * 13 12 11 48 48 H 0.97002 * 119.99739 * 180.02562 * 17 16 14 49 49 H 1.08994 * 109.97858 * 94.13655 * 22 10 9 50 50 H 1.08998 * 109.97228 * 215.38475 * 22 10 9 51 51 H 1.08996 * 109.40410 * 168.80266 * 24 23 7 52 52 H 1.08998 * 109.40101 * 288.62704 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1906 6 6 4.0961 -2.0009 0.5559 7 6 5.5551 -1.7227 0.2131 8 6 6.2601 -3.0282 -0.2039 9 6 7.1741 -2.5682 -1.3687 10 7 6.3486 -1.5505 -2.0691 11 6 7.1879 -0.6622 -2.8843 12 6 8.0765 -1.5021 -3.8040 13 6 8.9501 -0.5768 -4.6534 14 6 9.8258 -1.4042 -5.5588 15 1 9.7650 -2.4821 -5.5314 16 6 10.7039 -0.7849 -6.4228 17 7 11.4677 -1.5069 -7.2132 18 14 10.8085 1.0795 -6.4706 19 1 11.8289 1.5432 -5.4964 20 1 11.1925 1.5188 -7.8362 21 1 9.4876 1.6587 -6.1173 22 6 5.6521 -0.7932 -1.0049 23 8 6.2203 -1.1444 1.3337 24 6 5.7404 0.1629 1.6601 25 6 4.2386 0.1566 1.7196 26 8 3.6735 1.0784 2.2690 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1301 1.4425 0.0005 34 1 1.6054 -1.7198 1.2951 35 1 1.7516 -0.1583 2.1369 36 1 3.5484 -2.2362 -0.3566 37 1 4.0401 -2.8487 1.2387 38 1 6.8540 -3.4260 0.6188 39 1 5.5349 -3.7661 -0.5468 40 1 7.4005 -3.4027 -2.0324 41 1 8.0911 -2.1213 -0.9847 42 1 7.8134 -0.0533 -2.2315 43 1 6.5520 -0.0135 -3.4867 44 1 7.4510 -2.1110 -4.4567 45 1 8.7123 -2.1508 -3.2015 46 1 9.5756 0.0324 -4.0009 47 1 8.3139 0.0716 -5.2558 48 1 12.0857 -1.0713 -7.8209 49 1 6.2231 0.0989 -0.7479 50 1 4.6537 -0.5124 -1.3402 51 1 6.1397 0.4639 2.6286 52 1 6.0682 0.8698 0.8979 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274042993.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:22 Heat of formation + Delta-G solvation = -79.339084 kcal Electronic energy + Delta-G solvation = -29179.119788 eV Core-core repulsion = 25371.399320 eV Total energy + Delta-G solvation = -3807.720467 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.58958 -39.41618 -37.25664 -36.85746 -34.58241 -34.12326 -32.44539 -30.84473 -29.44491 -28.65242 -27.50956 -27.36084 -25.81033 -25.26531 -23.20333 -21.65301 -21.22360 -20.48626 -19.78671 -18.77136 -18.04323 -17.17594 -16.76121 -16.44676 -16.17694 -15.64272 -15.31958 -15.05231 -14.76903 -14.53103 -14.32043 -14.05160 -13.88707 -13.64229 -13.36582 -13.08261 -12.95799 -12.75997 -12.58507 -12.50808 -12.31915 -12.15069 -11.87151 -11.71790 -11.66984 -11.41761 -11.35984 -11.24144 -11.13824 -11.01622 -10.89603 -10.70265 -10.62359 -9.99890 -9.77235 -9.68483 -9.56280 -9.18699 -9.05798 -8.54543 -8.38938 -6.04997 -4.02878 2.18007 2.45767 3.21256 3.29673 3.37340 3.40790 3.86800 3.99168 4.19343 4.26196 4.44459 4.45252 4.48998 4.54700 4.70302 4.77220 4.93597 4.99142 5.06740 5.10158 5.15659 5.24057 5.28946 5.28964 5.34817 5.36493 5.47504 5.51681 5.52194 5.58258 5.61548 5.66820 5.69211 5.78743 5.89120 5.89867 5.94443 6.05262 6.08548 6.12785 6.43200 6.49793 6.56288 6.78400 6.95848 7.00944 7.10941 7.29851 7.42108 7.71840 7.78905 8.53544 9.00150 9.57675 11.08526 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.017291 B = 0.002660 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.995766 B =10522.507031 C =10947.675793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C -0.138 4.138 4 C 0.113 3.887 5 N -0.601 5.601 6 C 0.099 3.901 7 C 0.090 3.910 8 C -0.106 4.106 9 C 0.036 3.964 10 N -0.510 5.510 11 C 0.044 3.956 12 C -0.100 4.100 13 C -0.013 4.013 14 C -0.519 4.519 15 H 0.072 0.928 16 C 0.065 3.935 17 N -0.904 5.904 18 Si 0.880 3.120 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.266 1.266 22 C 0.011 3.989 23 O -0.356 6.356 24 C 0.044 3.956 25 C 0.490 3.510 26 O -0.539 6.539 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.053 0.947 42 H 0.031 0.969 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.055 0.945 46 H 0.008 0.992 47 H 0.015 0.985 48 H 0.263 0.737 49 H 0.054 0.946 50 H 0.084 0.916 51 H 0.131 0.869 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.111 -0.337 19.608 28.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.132 4.132 3 C -0.195 4.195 4 C -0.009 4.009 5 N -0.334 5.334 6 C -0.024 4.024 7 C 0.050 3.950 8 C -0.144 4.144 9 C -0.092 4.092 10 N -0.234 5.234 11 C -0.084 4.084 12 C -0.138 4.138 13 C -0.051 4.051 14 C -0.557 4.557 15 H 0.090 0.910 16 C -0.135 4.135 17 N -0.543 5.543 18 Si 0.707 3.293 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.190 1.190 22 C -0.118 4.118 23 O -0.274 6.274 24 C -0.035 4.035 25 C 0.278 3.722 26 O -0.416 6.416 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.096 0.904 35 H 0.106 0.894 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.071 0.929 42 H 0.050 0.950 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.027 0.973 47 H 0.034 0.966 48 H 0.072 0.928 49 H 0.072 0.928 50 H 0.102 0.898 51 H 0.149 0.851 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.473 -0.175 19.501 28.274 hybrid contribution 0.641 1.563 0.150 1.696 sum -19.832 1.388 19.651 27.953 Atomic orbital electron populations 1.21763 0.94404 1.01787 1.02218 1.21500 0.96097 0.97332 0.98242 1.21794 1.00926 0.95244 1.01575 1.21665 0.78821 1.01070 0.99356 1.47529 1.07065 1.21140 1.57693 1.22124 0.93281 0.87975 0.99007 1.22358 0.91046 0.95512 0.86074 1.22493 0.99295 0.94028 0.98617 1.23294 0.95028 0.96474 0.94380 1.64956 1.27124 1.13298 1.18048 1.22533 0.94792 0.95122 0.95907 1.21524 0.96779 0.98414 0.97096 1.19546 0.94894 0.95622 0.95018 1.21128 1.19966 0.94940 1.19654 0.91015 1.25038 0.95229 0.98127 0.95153 1.69915 1.24604 1.35518 1.24267 0.86777 0.78828 0.86425 0.77239 1.20358 1.21385 1.19050 1.23527 1.00998 0.96112 0.91165 1.88157 1.60966 1.29976 1.48339 1.22853 0.89407 0.86936 1.04340 1.20888 0.91008 0.82125 0.78151 1.90737 1.72494 1.34764 1.43651 0.92485 0.92256 0.92582 0.90991 0.93164 0.92146 0.93214 0.90436 0.89397 0.88901 0.90449 0.89269 0.88903 0.88820 0.92895 0.95046 0.90978 0.91869 0.92653 0.97323 0.96628 0.92753 0.92753 0.89764 0.85126 0.89110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.19 37.16 0.34 -0.57 16 2 C -0.11 -0.87 3.13 -90.62 -0.28 -1.16 16 3 C -0.14 -1.33 7.92 37.16 0.29 -1.03 16 4 C 0.11 0.89 4.96 -4.04 -0.02 0.87 16 5 N -0.60 -5.41 2.71 -174.71 -0.47 -5.88 16 6 C 0.10 0.77 4.99 -4.50 -0.02 0.75 16 7 C 0.09 0.86 0.96 -90.05 -0.09 0.77 16 8 C -0.11 -0.96 6.32 -25.07 -0.16 -1.12 16 9 C 0.04 0.43 5.11 -1.81 -0.01 0.42 16 10 N -0.51 -6.76 5.40 -230.54 -1.25 -8.00 16 11 C 0.04 0.70 5.03 -3.83 -0.02 0.68 16 12 C -0.10 -1.93 4.81 -26.74 -0.13 -2.06 16 13 C -0.01 -0.30 4.04 -27.88 -0.11 -0.42 16 14 C -0.52 -14.76 9.66 -34.44 -0.33 -15.10 16 15 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 16 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 17 N -0.90 -27.93 13.96 55.43 0.77 -27.15 16 18 Si 0.88 21.78 27.47 -169.99 -4.67 17.11 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 22 C 0.01 0.12 5.39 -2.93 -0.02 0.10 16 23 O -0.36 -3.75 10.34 -35.23 -0.36 -4.11 16 24 C 0.04 0.42 6.42 35.81 0.23 0.65 16 25 C 0.49 5.32 5.92 -11.59 -0.07 5.26 16 26 O -0.54 -7.25 14.56 5.56 0.08 -7.17 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.63 7.93 -51.93 -0.41 0.22 16 33 H 0.05 0.55 6.10 -51.93 -0.32 0.24 16 34 H 0.08 0.46 8.04 -51.93 -0.42 0.04 16 35 H 0.09 0.81 7.22 -51.93 -0.38 0.44 16 36 H 0.09 0.64 7.98 -51.93 -0.41 0.22 16 37 H 0.08 0.52 8.11 -51.93 -0.42 0.09 16 38 H 0.09 0.75 8.06 -51.93 -0.42 0.33 16 39 H 0.09 0.69 7.85 -51.93 -0.41 0.28 16 40 H 0.09 1.15 7.68 -51.93 -0.40 0.75 16 41 H 0.05 0.69 7.99 -51.93 -0.41 0.28 16 42 H 0.03 0.50 7.82 -51.93 -0.41 0.09 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 45 H 0.05 1.05 6.79 -51.93 -0.35 0.70 16 46 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 47 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 48 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 49 H 0.05 0.64 5.62 -51.93 -0.29 0.35 16 50 H 0.08 0.92 7.62 -51.93 -0.40 0.53 16 51 H 0.13 1.08 8.14 -51.93 -0.42 0.66 16 52 H 0.09 0.85 6.53 -51.93 -0.34 0.51 16 LS Contribution 392.05 15.07 5.91 5.91 Total: -1.00 -32.34 392.05 -10.00 -42.33 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -9.52 Total: -2.90 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: -0.49 Total: -10.13 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: -0.94 Total: -41.04 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: -0.28 Total: -11.28 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.67 Total: 17.11 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.34 -10.00 -42.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274042993.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.006 kcal (2) G-P(sol) polarization free energy of solvation -32.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds