Wall clock time and date at job start Tue Mar 31 2020 13:50:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47138 * 2 1 4 4 C 1.53001 * 109.47072 * 120.00098 * 2 1 3 5 5 N 1.46502 * 109.47143 * 174.99746 * 4 2 1 6 6 C 1.46194 * 118.77323 * 270.02005 * 5 4 2 7 7 C 1.52434 * 109.94724 * 162.44781 * 6 5 4 8 8 C 1.54122 * 110.12506 * 169.22769 * 7 6 5 9 9 C 1.55040 * 102.80802 * 140.95439 * 8 7 6 10 10 N 1.48584 * 103.28682 * 322.98014 * 9 8 7 11 11 C 1.46901 * 110.99781 * 159.44584 * 10 9 8 12 12 C 1.52992 * 109.47859 * 52.58089 * 11 10 9 13 13 C 1.52997 * 109.47482 * 179.97438 * 12 11 10 14 14 C 1.50701 * 109.47212 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99594 * 180.02562 * 16 14 13 18 18 Si 1.86797 * 119.99875 * 0.02562 * 16 14 13 19 19 H 1.48504 * 109.47061 * 90.00257 * 18 16 14 20 20 H 1.48497 * 109.46906 * 209.99430 * 18 16 14 21 21 H 1.48498 * 109.47403 * 329.99876 * 18 16 14 22 22 C 1.48030 * 105.83684 * 38.91634 * 10 9 8 23 23 O 1.42568 * 110.11459 * 47.68912 * 7 6 5 24 24 C 1.43034 * 113.17743 * 293.26568 * 23 7 6 25 25 C 1.33850 * 118.76904 * 89.99682 * 5 4 2 26 26 O 1.21279 * 118.69952 * 2.45140 * 25 5 4 27 27 H 1.08995 * 109.46986 * 300.00148 * 1 2 3 28 28 H 1.09003 * 109.46641 * 60.00026 * 1 2 3 29 29 H 1.09001 * 109.47040 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46561 * 239.99758 * 2 1 3 31 31 H 1.09003 * 109.47333 * 299.99550 * 3 2 1 32 32 H 1.08995 * 109.47303 * 60.00046 * 3 2 1 33 33 H 1.09001 * 109.47139 * 179.97438 * 3 2 1 34 34 H 1.09003 * 109.47064 * 54.99896 * 4 2 1 35 35 H 1.08997 * 109.46769 * 295.00078 * 4 2 1 36 36 H 1.09000 * 109.39086 * 42.29793 * 6 5 4 37 37 H 1.08995 * 109.39058 * 282.59164 * 6 5 4 38 38 H 1.08994 * 110.74168 * 259.28046 * 8 7 6 39 39 H 1.08991 * 110.74566 * 22.44380 * 8 7 6 40 40 H 1.09000 * 110.65846 * 204.52841 * 9 8 7 41 41 H 1.09004 * 110.66256 * 81.42689 * 9 8 7 42 42 H 1.09002 * 109.46980 * 292.57747 * 11 10 9 43 43 H 1.09001 * 109.46628 * 172.58169 * 11 10 9 44 44 H 1.09002 * 109.47103 * 59.99734 * 12 11 10 45 45 H 1.08998 * 109.46862 * 300.00546 * 12 11 10 46 46 H 1.09002 * 109.47153 * 59.99783 * 13 12 11 47 47 H 1.09001 * 109.46832 * 299.99974 * 13 12 11 48 48 H 0.97002 * 119.99739 * 180.02562 * 17 16 14 49 49 H 1.08994 * 109.97858 * 94.13655 * 22 10 9 50 50 H 1.08998 * 109.97228 * 215.38475 * 22 10 9 51 51 H 1.08996 * 109.40410 * 168.80266 * 24 23 7 52 52 H 1.08998 * 109.40101 * 288.62704 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1906 6 6 4.0961 -2.0009 0.5559 7 6 5.5551 -1.7227 0.2131 8 6 6.2601 -3.0282 -0.2039 9 6 7.1741 -2.5682 -1.3687 10 7 6.3486 -1.5505 -2.0691 11 6 7.1879 -0.6622 -2.8843 12 6 8.0765 -1.5021 -3.8040 13 6 8.9501 -0.5768 -4.6534 14 6 9.8258 -1.4042 -5.5588 15 1 9.7650 -2.4821 -5.5314 16 6 10.7039 -0.7849 -6.4228 17 7 11.4677 -1.5069 -7.2132 18 14 10.8085 1.0795 -6.4706 19 1 11.8289 1.5432 -5.4964 20 1 11.1925 1.5188 -7.8362 21 1 9.4876 1.6587 -6.1173 22 6 5.6521 -0.7932 -1.0049 23 8 6.2203 -1.1444 1.3337 24 6 5.7404 0.1629 1.6601 25 6 4.2386 0.1566 1.7196 26 8 3.6735 1.0784 2.2690 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.6768 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1301 1.4425 0.0005 34 1 1.6054 -1.7198 1.2951 35 1 1.7516 -0.1583 2.1369 36 1 3.5484 -2.2362 -0.3566 37 1 4.0401 -2.8487 1.2387 38 1 6.8540 -3.4260 0.6188 39 1 5.5349 -3.7661 -0.5468 40 1 7.4005 -3.4027 -2.0324 41 1 8.0911 -2.1213 -0.9847 42 1 7.8134 -0.0533 -2.2315 43 1 6.5520 -0.0135 -3.4867 44 1 7.4510 -2.1110 -4.4567 45 1 8.7123 -2.1508 -3.2015 46 1 9.5756 0.0324 -4.0009 47 1 8.3139 0.0716 -5.2558 48 1 12.0857 -1.0713 -7.8209 49 1 6.2231 0.0989 -0.7479 50 1 4.6537 -0.5124 -1.3402 51 1 6.1397 0.4639 2.6286 52 1 6.0682 0.8698 0.8979 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274042993.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:21 Heat of formation + Delta-G solvation = -101.041692 kcal Electronic energy + Delta-G solvation = -29180.060883 eV Core-core repulsion = 25371.399320 eV Total energy + Delta-G solvation = -3808.661563 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.36349 -40.29152 -38.22374 -37.59882 -35.92563 -35.13497 -34.14573 -32.24542 -30.26502 -29.51875 -28.76747 -28.09548 -26.71900 -26.16653 -24.55606 -22.72528 -22.40637 -21.34664 -21.02105 -19.53206 -19.00064 -18.74205 -17.89329 -17.31672 -17.05435 -16.61573 -16.24661 -16.09612 -16.04623 -15.58048 -15.31152 -15.19408 -14.79538 -14.65296 -14.53523 -14.26470 -13.99128 -13.80667 -13.69840 -13.40839 -13.31806 -13.12649 -12.95297 -12.79935 -12.62314 -12.56802 -12.34098 -12.21896 -12.10638 -11.92252 -11.89300 -11.82705 -11.65721 -11.62868 -11.47882 -11.32704 -11.20709 -10.76806 -10.44813 -9.76557 -9.46106 -8.29790 -6.33661 1.34841 1.36723 1.38319 1.48628 1.76777 2.35466 2.46379 2.96894 3.05590 3.15876 3.38404 3.50037 3.67087 3.85869 3.93809 4.03098 4.08983 4.14415 4.17552 4.25817 4.28150 4.40134 4.43135 4.49165 4.55603 4.62630 4.64525 4.66510 4.71703 4.76971 4.79963 4.83502 4.89607 4.93148 4.94736 5.01516 5.02999 5.08486 5.12394 5.19154 5.26775 5.37350 5.46513 5.49457 5.57887 5.64761 5.73311 5.91368 5.98346 6.26696 6.29288 6.74493 6.94638 7.30927 8.87063 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.017291 B = 0.002660 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.995766 B =10522.507031 C =10947.675793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.108 4.108 3 C -0.134 4.134 4 C 0.112 3.888 5 N -0.598 5.598 6 C 0.101 3.899 7 C 0.091 3.909 8 C -0.096 4.096 9 C 0.030 3.970 10 N -0.513 5.513 11 C 0.055 3.945 12 C -0.089 4.089 13 C -0.011 4.011 14 C -0.531 4.531 15 H 0.032 0.968 16 C 0.003 3.997 17 N -0.952 5.952 18 Si 0.950 3.050 19 H -0.267 1.267 20 H -0.284 1.284 21 H -0.247 1.247 22 C 0.013 3.987 23 O -0.365 6.365 24 C 0.044 3.956 25 C 0.487 3.513 26 O -0.572 6.572 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.052 0.948 32 H 0.045 0.955 33 H 0.031 0.969 34 H 0.105 0.895 35 H 0.071 0.929 36 H 0.109 0.891 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.116 0.884 40 H 0.087 0.913 41 H 0.038 0.962 42 H 0.031 0.969 43 H 0.074 0.926 44 H 0.053 0.947 45 H 0.051 0.949 46 H 0.015 0.985 47 H 0.019 0.981 48 H 0.266 0.734 49 H 0.047 0.953 50 H 0.089 0.911 51 H 0.142 0.858 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.851 -0.095 20.702 30.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.127 4.127 3 C -0.192 4.192 4 C -0.009 4.009 5 N -0.329 5.329 6 C -0.021 4.021 7 C 0.051 3.949 8 C -0.134 4.134 9 C -0.098 4.098 10 N -0.237 5.237 11 C -0.073 4.073 12 C -0.127 4.127 13 C -0.049 4.049 14 C -0.569 4.569 15 H 0.051 0.949 16 C -0.194 4.194 17 N -0.592 5.592 18 Si 0.774 3.226 19 H -0.192 1.192 20 H -0.210 1.210 21 H -0.170 1.170 22 C -0.116 4.116 23 O -0.283 6.283 24 C -0.035 4.035 25 C 0.275 3.725 26 O -0.453 6.453 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.071 0.929 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.123 0.877 35 H 0.090 0.910 36 H 0.127 0.873 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.134 0.866 40 H 0.105 0.895 41 H 0.057 0.943 42 H 0.049 0.951 43 H 0.092 0.908 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.033 0.967 47 H 0.038 0.962 48 H 0.075 0.925 49 H 0.065 0.935 50 H 0.107 0.893 51 H 0.159 0.841 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -22.235 0.037 20.601 30.312 hybrid contribution 1.202 1.385 -0.210 1.846 sum -21.032 1.423 20.392 29.329 Atomic orbital electron populations 1.21733 0.93126 1.02819 1.02125 1.21471 0.97115 0.95832 0.98282 1.21750 0.99683 0.96774 1.00983 1.21759 0.78202 1.02353 0.98632 1.47603 1.07548 1.20958 1.56829 1.22232 0.91906 0.87834 1.00166 1.22388 0.92347 0.95060 0.85110 1.22492 0.99208 0.94172 0.97501 1.23333 0.95176 0.95888 0.95378 1.64913 1.26639 1.13179 1.19000 1.22277 0.94555 0.94742 0.95714 1.21316 0.96549 0.97866 0.96965 1.19496 0.94809 0.95745 0.94806 1.21491 1.20894 0.93851 1.20666 0.94920 1.26029 0.94771 1.03907 0.94671 1.70069 1.25743 1.37991 1.25433 0.85655 0.79887 0.79494 0.77592 1.19244 1.20953 1.17018 1.23545 1.00623 0.96070 0.91337 1.88153 1.61399 1.30254 1.48521 1.22888 0.88892 0.86715 1.04981 1.21061 0.91447 0.82079 0.77927 1.90723 1.73089 1.36125 1.45356 0.92718 0.92260 0.90971 0.90653 0.92859 0.93562 0.94998 0.87677 0.91022 0.87296 0.88375 0.88344 0.86585 0.89458 0.94347 0.95055 0.90761 0.92827 0.93009 0.96686 0.96247 0.92510 0.93527 0.89309 0.84086 0.89059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.19 71.98 0.66 -0.81 16 2 C -0.11 -1.47 3.13 -10.79 -0.03 -1.50 16 3 C -0.13 -2.52 7.92 71.98 0.57 -1.95 16 4 C 0.11 1.52 4.96 86.38 0.43 1.95 16 5 N -0.60 -9.45 2.71 -825.58 -2.23 -11.68 16 6 C 0.10 1.22 4.99 86.25 0.43 1.65 16 7 C 0.09 1.50 0.96 -10.43 -0.01 1.49 16 8 C -0.10 -1.46 6.32 31.67 0.20 -1.26 16 9 C 0.03 0.68 5.11 86.68 0.44 1.12 16 10 N -0.51 -12.78 5.40 -883.30 -4.77 -17.56 16 11 C 0.06 1.68 5.03 86.30 0.43 2.11 16 12 C -0.09 -3.40 4.81 30.59 0.15 -3.26 16 13 C -0.01 -0.49 4.04 29.85 0.12 -0.37 16 14 C -0.53 -30.83 9.66 25.60 0.25 -30.58 16 15 H 0.03 2.08 7.99 -2.91 -0.02 2.06 16 16 C 0.00 0.17 5.47 84.66 0.46 0.63 16 17 N -0.95 -60.11 13.96 21.45 0.30 -59.81 16 18 Si 0.95 44.52 27.47 68.60 1.88 46.41 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 21 H -0.25 -10.71 6.54 99.48 0.65 -10.06 16 22 C 0.01 0.26 5.39 86.26 0.46 0.72 16 23 O -0.36 -6.97 10.34 -148.98 -1.54 -8.51 16 24 C 0.04 0.81 6.42 71.11 0.46 1.26 16 25 C 0.49 10.06 5.92 87.68 0.52 10.58 16 26 O -0.57 -15.36 14.56 -3.03 -0.04 -15.41 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 31 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.05 0.98 7.93 -2.39 -0.02 0.96 16 33 H 0.03 0.70 6.10 -2.39 -0.01 0.68 16 34 H 0.11 0.86 8.04 -2.39 -0.02 0.84 16 35 H 0.07 1.25 7.22 -2.39 -0.02 1.23 16 36 H 0.11 1.03 7.98 -2.39 -0.02 1.02 16 37 H 0.10 0.87 8.11 -2.39 -0.02 0.85 16 38 H 0.10 1.38 8.06 -2.39 -0.02 1.36 16 39 H 0.12 1.27 7.85 -2.39 -0.02 1.25 16 40 H 0.09 2.08 7.68 -2.39 -0.02 2.06 16 41 H 0.04 0.98 7.99 -2.39 -0.02 0.96 16 42 H 0.03 0.95 7.82 -2.39 -0.02 0.94 16 43 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 45 H 0.05 1.99 6.79 -2.39 -0.02 1.97 16 46 H 0.01 0.68 7.57 -2.39 -0.02 0.66 16 47 H 0.02 0.89 7.20 -2.39 -0.02 0.87 16 48 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 49 H 0.05 1.04 5.62 -2.39 -0.01 1.03 16 50 H 0.09 1.75 7.62 -2.39 -0.02 1.73 16 51 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 52 H 0.09 1.65 6.53 -2.39 -0.02 1.63 16 Total: -1.00 -71.35 392.05 -0.05 -71.40 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: 0.81 Total: 13.38 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: 5.54 Total: -18.22 kcal Atomic # 7 Polarization: -82.34 SS G_CDS: -6.71 Total: -89.05 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -1.58 Total: -23.92 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.88 Total: 46.41 kcal Total: -71.35 -0.05 -71.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274042993.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.639 kcal (2) G-P(sol) polarization free energy of solvation -71.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds