Wall clock time and date at job start Tue Mar 31 2020 13:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52998 * 109.47555 * 2 1 4 4 O 1.42905 * 109.47154 * 239.99616 * 2 1 3 5 5 C 1.52998 * 109.47290 * 120.00345 * 2 1 3 6 6 N 1.46903 * 109.47544 * 186.50175 * 5 2 1 7 7 C 1.46973 * 111.00126 * 287.02537 * 6 5 2 8 8 C 1.53030 * 109.47924 * 175.40364 * 7 6 5 9 9 C 1.53120 * 109.38695 * 59.76156 * 8 7 6 10 10 C 1.53255 * 109.07026 * 301.74199 * 9 8 7 11 11 C 1.45972 * 111.00056 * 162.62446 * 6 5 2 12 12 C 1.53973 * 110.67196 * 60.51251 * 11 6 5 13 13 C 1.51430 * 104.18835 * 266.03252 * 12 11 6 14 14 O 1.21278 * 124.94552 * 164.23477 * 13 12 11 15 15 N 1.34496 * 110.10523 * 344.21114 * 13 12 11 16 16 C 1.46497 * 124.35363 * 179.63211 * 15 13 12 17 17 C 1.53005 * 109.47419 * 89.97501 * 16 15 13 18 18 C 1.50701 * 109.47326 * 180.02562 * 17 16 15 19 19 H 1.08007 * 119.99632 * 359.97438 * 18 17 16 20 20 C 1.37867 * 119.99995 * 180.02562 * 18 17 16 21 21 N 1.31519 * 120.00218 * 179.97438 * 20 18 17 22 22 Si 1.86799 * 120.00179 * 359.97438 * 20 18 17 23 23 H 1.48504 * 109.47261 * 89.99696 * 22 20 18 24 24 H 1.48496 * 109.47269 * 210.00042 * 22 20 18 25 25 H 1.48507 * 109.46893 * 330.00151 * 22 20 18 26 26 C 1.46919 * 111.30052 * 359.63173 * 15 13 12 27 27 H 1.08999 * 109.47495 * 300.00232 * 1 2 3 28 28 H 1.09009 * 109.46908 * 59.99934 * 1 2 3 29 29 H 1.09000 * 109.47680 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47341 * 180.02562 * 3 2 1 31 31 H 1.09000 * 109.47170 * 299.99752 * 3 2 1 32 32 H 1.08997 * 109.47328 * 60.00050 * 3 2 1 33 33 H 0.96696 * 114.00474 * 300.00704 * 4 2 1 34 34 H 1.09003 * 109.47552 * 66.49939 * 5 2 1 35 35 H 1.08999 * 109.46915 * 306.49885 * 5 2 1 36 36 H 1.09004 * 109.47045 * 55.39601 * 7 6 5 37 37 H 1.09003 * 109.47049 * 295.40763 * 7 6 5 38 38 H 1.09006 * 109.48452 * 299.78541 * 8 7 6 39 39 H 1.09006 * 109.48729 * 179.73826 * 8 7 6 40 40 H 1.09006 * 109.53820 * 181.86740 * 9 8 7 41 41 H 1.09003 * 109.60827 * 61.66519 * 9 8 7 42 42 H 1.08998 * 109.48978 * 296.48835 * 10 9 8 43 43 H 1.09004 * 109.48870 * 176.41233 * 10 9 8 44 44 H 1.09003 * 110.51489 * 147.31977 * 12 11 6 45 45 H 1.08998 * 110.51203 * 24.74605 * 12 11 6 46 46 H 1.09000 * 109.47731 * 209.97974 * 16 15 13 47 47 H 1.09006 * 109.47159 * 329.97665 * 16 15 13 48 48 H 1.08999 * 109.46845 * 300.00132 * 17 16 15 49 49 H 1.08994 * 109.46831 * 60.00308 * 17 16 15 50 50 H 0.96999 * 119.99794 * 179.97438 * 21 20 18 51 51 H 1.09004 * 110.27104 * 135.38266 * 26 15 13 52 52 H 1.08997 * 110.27017 * 257.44908 * 26 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 -1.1668 5 6 2.0399 -0.7213 1.2492 6 7 3.5006 -0.5870 1.3302 7 6 4.1636 -1.4291 0.3245 8 6 5.6725 -1.1770 0.3624 9 6 6.2097 -1.5167 1.7554 10 6 5.4801 -0.6603 2.7961 11 6 3.9798 -0.8891 2.6755 12 6 3.6210 -2.3339 3.0687 13 6 2.3081 -2.2012 3.8115 14 8 1.5510 -3.1173 4.0533 15 7 2.1041 -0.9195 4.1645 16 6 0.9256 -0.4394 4.8903 17 6 1.1897 -0.5105 6.3958 18 6 -0.0229 -0.0173 7.1424 19 1 -0.8946 0.3142 6.5976 20 6 -0.0190 0.0118 8.5208 21 7 -1.0770 0.4427 9.1724 22 14 1.4889 -0.5608 9.4629 23 1 2.4013 0.5899 9.6836 24 1 1.0710 -1.1196 10.7737 25 1 2.1934 -1.6080 8.6802 26 6 3.2151 -0.0626 3.7287 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4424 -0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.7209 -1.5953 -1.2330 34 1 1.7747 -1.7771 1.1929 35 1 1.5848 -0.2791 2.1353 36 1 3.7789 -1.1837 -0.6655 37 1 3.9650 -2.4787 0.5414 38 1 5.8716 -0.1282 0.1417 39 1 6.1648 -1.8049 -0.3803 40 1 7.2786 -1.3066 1.7951 41 1 6.0377 -2.5722 1.9664 42 1 5.7027 0.3923 2.6214 43 1 5.8116 -0.9417 3.7956 44 1 4.3874 -2.7541 3.7199 45 1 3.4959 -2.9518 2.1796 46 1 0.7190 0.5923 4.6060 47 1 0.0669 -1.0635 4.6423 48 1 1.3962 -1.5423 6.6800 49 1 2.0482 0.1135 6.6438 50 1 -1.0744 0.4628 10.1422 51 1 2.8317 0.8549 3.2822 52 1 3.8658 0.1699 4.5717 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274593582.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:58 Heat of formation + Delta-G solvation = -103.583824 kcal Electronic energy + Delta-G solvation = -30568.167745 eV Core-core repulsion = 26759.395946 eV Total energy + Delta-G solvation = -3808.771798 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.57004 -39.90372 -38.64278 -37.17936 -35.50631 -34.45362 -33.77820 -32.78277 -31.54571 -29.68889 -28.18617 -27.85051 -27.16872 -25.82295 -24.09283 -23.01257 -22.46178 -21.24529 -20.48094 -19.68620 -19.01809 -17.95237 -17.75127 -17.22361 -16.60459 -16.46641 -16.22593 -15.86026 -15.82384 -15.39693 -15.08856 -14.97759 -14.83667 -14.75444 -14.50375 -14.14422 -13.89513 -13.74480 -13.54675 -13.35198 -13.11002 -12.98053 -12.95018 -12.91739 -12.73845 -12.54974 -12.45861 -12.38498 -12.20837 -12.01357 -11.83829 -11.66714 -11.62552 -11.55463 -11.36597 -11.17584 -10.88275 -10.81724 -10.43838 -9.67061 -9.24786 -8.35329 -6.40258 1.28553 1.32861 1.43854 1.50830 2.03385 2.30378 2.73971 2.99778 3.26556 3.32815 3.38864 3.76396 3.83995 3.93832 3.95320 4.13544 4.15670 4.20946 4.33016 4.34241 4.38878 4.43109 4.47440 4.56003 4.62199 4.63863 4.73097 4.74547 4.82071 4.83214 4.91264 4.96532 5.06844 5.07571 5.10694 5.13904 5.16319 5.19006 5.25163 5.25744 5.31933 5.45324 5.45917 5.50785 5.59008 5.66642 6.08638 6.16687 6.19118 6.21498 6.65949 6.80637 7.11179 7.25078 8.80969 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.014843 B = 0.003994 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.996897 B = 7009.514129 C = 8036.123139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.141 3.859 3 C -0.123 4.123 4 O -0.559 6.559 5 C 0.023 3.977 6 N -0.500 5.500 7 C 0.035 3.965 8 C -0.110 4.110 9 C -0.119 4.119 10 C -0.095 4.095 11 C 0.115 3.885 12 C -0.174 4.174 13 C 0.501 3.499 14 O -0.590 6.590 15 N -0.613 5.613 16 C 0.149 3.851 17 C -0.014 4.014 18 C -0.533 4.533 19 H 0.040 0.960 20 C 0.012 3.988 21 N -0.945 5.945 22 Si 0.948 3.052 23 H -0.255 1.255 24 H -0.283 1.283 25 H -0.264 1.264 26 C 0.102 3.898 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.382 0.618 34 H 0.020 0.980 35 H 0.079 0.921 36 H 0.110 0.890 37 H 0.025 0.975 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.080 0.920 41 H 0.057 0.943 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.118 0.882 45 H 0.102 0.898 46 H 0.090 0.910 47 H 0.050 0.950 48 H -0.002 1.002 49 H 0.029 0.971 50 H 0.268 0.732 51 H 0.099 0.901 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.484 -0.285 -22.483 28.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.101 3.899 3 C -0.180 4.180 4 O -0.366 6.366 5 C -0.106 4.106 6 N -0.223 5.223 7 C -0.091 4.091 8 C -0.148 4.148 9 C -0.157 4.157 10 C -0.133 4.133 11 C 0.024 3.976 12 C -0.215 4.215 13 C 0.290 3.710 14 O -0.471 6.471 15 N -0.345 5.345 16 C 0.027 3.973 17 C -0.052 4.052 18 C -0.571 4.571 19 H 0.059 0.941 20 C -0.186 4.186 21 N -0.585 5.585 22 Si 0.771 3.229 23 H -0.179 1.179 24 H -0.208 1.208 25 H -0.188 1.188 26 C -0.020 4.020 27 H 0.079 0.921 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.230 0.770 34 H 0.038 0.962 35 H 0.097 0.903 36 H 0.128 0.872 37 H 0.043 0.957 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.076 0.924 42 H 0.106 0.894 43 H 0.097 0.903 44 H 0.136 0.864 45 H 0.120 0.880 46 H 0.108 0.892 47 H 0.069 0.931 48 H 0.016 0.984 49 H 0.047 0.953 50 H 0.077 0.923 51 H 0.117 0.883 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 17.353 0.413 -22.371 28.315 hybrid contribution -0.996 -1.846 1.473 2.563 sum 16.356 -1.433 -20.898 26.577 Atomic orbital electron populations 1.22462 0.95761 1.02382 1.03025 1.21128 0.91800 0.93721 0.83284 1.21560 1.02907 0.92070 1.01481 1.86493 1.76220 1.29662 1.44268 1.22954 0.89327 0.98119 1.00158 1.61873 1.03668 1.54362 1.02352 1.22679 0.95413 0.93765 0.97280 1.21542 0.93655 1.02497 0.97095 1.21621 1.00295 0.99319 0.94455 1.21445 0.89227 1.02319 1.00299 1.21504 0.97181 0.89981 0.88919 1.23059 0.94882 1.01700 1.01873 1.21617 0.88381 0.82198 0.78774 1.90678 1.53165 1.43767 1.59504 1.48695 1.21653 1.08914 1.55195 1.21164 0.85493 0.99444 0.91157 1.19732 0.96245 0.95599 0.93616 1.21261 1.00746 1.43045 0.92043 0.94146 1.25893 0.99285 0.94575 0.98810 1.70042 1.31296 1.48556 1.08574 0.85700 0.79784 0.79676 0.77709 1.17911 1.20825 1.18826 1.22497 0.87629 0.94519 0.97358 0.92081 0.90865 0.92707 0.90654 0.92679 0.91645 0.76966 0.96185 0.90317 0.87192 0.95734 0.91093 0.90640 0.90163 0.92378 0.89431 0.90268 0.86373 0.87991 0.89195 0.93125 0.98391 0.95308 0.92292 0.88318 0.89270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.31 8.81 71.98 0.63 -2.68 16 2 C 0.14 2.57 1.15 -10.80 -0.01 2.56 16 3 C -0.12 -2.17 8.61 71.98 0.62 -1.55 16 4 O -0.56 -9.25 9.92 -148.98 -1.48 -10.73 16 5 C 0.02 0.48 2.74 86.30 0.24 0.72 16 6 N -0.50 -8.75 3.37 -845.89 -2.85 -11.60 16 7 C 0.04 0.53 4.93 86.30 0.43 0.95 16 8 C -0.11 -1.30 6.07 30.64 0.19 -1.11 16 9 C -0.12 -1.35 5.81 30.72 0.18 -1.17 16 10 C -0.09 -1.27 4.67 30.43 0.14 -1.12 16 11 C 0.12 2.14 0.72 4.18 0.00 2.14 16 12 C -0.17 -4.05 4.49 30.41 0.14 -3.92 16 13 C 0.50 17.45 6.70 87.93 0.59 18.04 16 14 O -0.59 -26.84 17.60 -3.02 -0.05 -26.89 16 15 N -0.61 -19.95 1.68 -817.86 -1.37 -21.32 16 16 C 0.15 5.99 5.86 86.38 0.51 6.49 16 17 C -0.01 -0.66 4.37 29.85 0.13 -0.53 16 18 C -0.53 -31.05 9.66 25.60 0.25 -30.80 16 19 H 0.04 2.55 7.99 -2.91 -0.02 2.52 16 20 C 0.01 0.72 5.47 84.65 0.46 1.18 16 21 N -0.94 -59.44 13.96 21.44 0.30 -59.14 16 22 Si 0.95 45.32 27.47 68.60 1.88 47.20 16 23 H -0.25 -11.26 7.11 99.48 0.71 -10.55 16 24 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 25 H -0.26 -12.41 6.54 99.48 0.65 -11.75 16 26 C 0.10 2.35 5.69 86.70 0.49 2.84 16 27 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 1.36 7.44 -2.39 -0.02 1.34 16 31 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.38 4.48 9.05 -74.06 -0.67 3.81 16 34 H 0.02 0.48 7.25 -2.39 -0.02 0.47 16 35 H 0.08 1.98 5.05 -2.39 -0.01 1.97 16 36 H 0.11 1.72 5.12 -2.39 -0.01 1.71 16 37 H 0.02 0.40 6.19 -2.39 -0.01 0.39 16 38 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 39 H 0.08 0.74 8.14 -2.38 -0.02 0.73 16 40 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 41 H 0.06 0.70 7.58 -2.39 -0.02 0.69 16 42 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.08 0.99 8.06 -2.39 -0.02 0.98 16 44 H 0.12 2.47 7.80 -2.39 -0.02 2.45 16 45 H 0.10 2.30 5.78 -2.39 -0.01 2.29 16 46 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 47 H 0.05 2.27 7.93 -2.38 -0.02 2.25 16 48 H 0.00 -0.12 7.20 -2.39 -0.02 -0.14 16 49 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 50 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 51 H 0.10 2.10 7.52 -2.39 -0.02 2.08 16 52 H 0.09 1.91 7.86 -2.39 -0.02 1.89 16 Total: -1.00 -73.91 385.60 1.58 -72.33 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.17 Total: 18.08 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 4.98 Total: -7.94 kcal Atomic # 7 Polarization: -88.13 SS G_CDS: -3.92 Total: -92.06 kcal Atomic # 8 Polarization: -36.09 SS G_CDS: -1.53 Total: -37.62 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.88 Total: 47.20 kcal Total: -73.91 1.58 -72.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274593582.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.253 kcal (2) G-P(sol) polarization free energy of solvation -73.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds