Wall clock time and date at job start Tue Mar 31 2020 13:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47144 * 2 1 4 4 C 1.52990 * 109.47318 * 119.99928 * 2 1 3 5 5 N 1.46500 * 109.47290 * 66.21420 * 4 2 1 6 6 C 1.34775 * 120.00002 * 90.45538 * 5 4 2 7 7 O 1.21348 * 119.99999 * 4.97463 * 6 5 4 8 8 C 1.49451 * 119.99864 * 184.96764 * 6 5 4 9 9 O 1.21356 * 120.00369 * 275.39744 * 8 6 5 10 10 N 1.34781 * 119.99946 * 95.39760 * 8 6 5 11 11 C 1.46925 * 120.62737 * 355.50985 * 10 8 6 12 12 C 1.53199 * 108.77404 * 126.41143 * 11 10 8 13 13 C 1.53042 * 109.33777 * 54.61792 * 12 11 10 14 14 C 1.53043 * 109.53920 * 298.68272 * 13 12 11 15 15 H 1.09003 * 109.49631 * 301.34760 * 14 13 12 16 16 C 1.50697 * 109.49721 * 181.28753 * 14 13 12 17 17 H 1.08003 * 120.00003 * 0.06151 * 16 14 13 18 18 C 1.37876 * 120.00245 * 180.34120 * 16 14 13 19 19 N 1.31516 * 119.99631 * 359.72048 * 18 16 14 20 20 Si 1.86793 * 120.00375 * 179.72189 * 18 16 14 21 21 H 1.48503 * 109.46957 * 89.99671 * 20 18 16 22 22 H 1.48492 * 109.47289 * 209.99671 * 20 18 16 23 23 H 1.48499 * 109.47184 * 330.00006 * 20 18 16 24 24 C 1.46921 * 120.62905 * 175.52763 * 10 8 6 25 25 C 1.46506 * 120.00006 * 270.46524 * 5 4 2 26 26 C 1.52998 * 109.47291 * 126.63161 * 25 5 4 27 27 C 1.53002 * 109.46599 * 246.62963 * 25 5 4 28 28 H 1.09005 * 109.47123 * 63.43710 * 1 2 3 29 29 H 1.08997 * 109.47001 * 183.43988 * 1 2 3 30 30 H 1.08996 * 109.46979 * 303.44007 * 1 2 3 31 31 H 1.09002 * 109.47190 * 240.00059 * 2 1 3 32 32 H 1.09001 * 109.47181 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46867 * 300.00078 * 3 2 1 34 34 H 1.09002 * 109.47029 * 59.99961 * 3 2 1 35 35 H 1.08996 * 109.47476 * 306.21665 * 4 2 1 36 36 H 1.09007 * 109.47708 * 186.21401 * 4 2 1 37 37 H 1.08998 * 109.58592 * 246.19360 * 11 10 8 38 38 H 1.08996 * 109.58963 * 6.62939 * 11 10 8 39 39 H 1.08998 * 109.49396 * 174.58100 * 12 11 10 40 40 H 1.08995 * 109.49604 * 294.67990 * 12 11 10 41 41 H 1.08994 * 109.48352 * 178.64553 * 13 12 11 42 42 H 1.09000 * 109.43268 * 58.68438 * 13 12 11 43 43 H 0.96996 * 119.99772 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.58479 * 113.80302 * 24 10 8 45 45 H 1.08999 * 109.70848 * 353.44684 * 24 10 8 46 46 H 1.08994 * 109.46969 * 6.62840 * 25 5 4 47 47 H 1.08998 * 109.47385 * 77.50253 * 26 25 5 48 48 H 1.09006 * 109.46939 * 197.50444 * 26 25 5 49 49 H 1.09001 * 109.47116 * 317.50343 * 26 25 5 50 50 H 1.09001 * 109.47442 * 64.21994 * 27 25 5 51 51 H 1.09008 * 109.46455 * 184.21963 * 27 25 5 52 52 H 1.08998 * 109.47387 * 304.21485 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6776 -2.1388 1.1768 6 6 2.5219 -3.0220 0.6080 7 8 3.6193 -2.6601 0.2374 8 6 2.1067 -4.4471 0.4339 9 8 2.2446 -5.2352 1.3464 10 7 1.5790 -4.8570 -0.7366 11 6 1.3148 -3.8959 -1.8160 12 6 1.9998 -4.3895 -3.0943 13 6 1.5392 -5.8172 -3.3972 14 6 1.9423 -6.7404 -2.2451 15 1 3.0239 -6.7075 -2.1140 16 6 1.5163 -8.1515 -2.5586 17 1 1.0095 -8.3688 -3.4873 18 6 1.7682 -9.1640 -1.6574 19 7 2.3852 -8.8993 -0.5265 20 14 1.2333 -10.9118 -2.0425 21 1 2.3251 -11.6166 -2.7611 22 1 0.9311 -11.6273 -0.7769 23 1 0.0183 -10.8809 -2.8959 24 6 1.2567 -6.2734 -0.9572 25 6 0.3973 -2.5964 1.7226 26 6 -0.3624 -3.3813 0.6513 27 6 0.6518 -3.4987 2.9317 28 1 -0.3633 0.4596 -0.9192 29 1 -0.3633 -1.0258 0.0617 30 1 -0.3633 0.5663 0.8575 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.5887 -0.2757 2.1357 36 1 3.1244 -0.6259 1.3066 37 1 0.2403 -3.8204 -1.9831 38 1 1.7136 -2.9194 -1.5415 39 1 1.7325 -3.7370 -3.9255 40 1 3.0808 -4.3782 -2.9553 41 1 2.0067 -6.1620 -4.3195 42 1 0.4553 -5.8319 -3.5121 43 1 2.5628 -9.6117 0.1073 44 1 0.1774 -6.3917 -1.0542 45 1 1.6152 -6.8672 -0.1164 46 1 -0.1951 -1.7348 2.0304 47 1 0.0603 -4.3824 0.5660 48 1 -1.4136 -3.4533 0.9307 49 1 -0.2753 -2.8674 -0.3060 50 1 1.1261 -2.9195 3.7239 51 1 -0.2959 -3.8992 3.2919 52 1 1.3062 -4.3203 2.6406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329631369.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:59 Heat of formation + Delta-G solvation = -69.343518 kcal Electronic energy + Delta-G solvation = -30878.954729 eV Core-core repulsion = 27071.667702 eV Total energy + Delta-G solvation = -3807.287027 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.07675 -38.70623 -37.07143 -36.84318 -35.19668 -33.47535 -31.93024 -31.46292 -29.92022 -27.63313 -27.34513 -26.75632 -25.26234 -24.99195 -23.23548 -21.89626 -21.50935 -20.41438 -19.22181 -18.29556 -17.24732 -16.80168 -16.28179 -16.10331 -15.28237 -15.09447 -14.62214 -14.58662 -14.52566 -14.04632 -13.77021 -13.59836 -13.46310 -13.22912 -12.97385 -12.82014 -12.69549 -12.52198 -12.47940 -12.33756 -12.03892 -11.76310 -11.62720 -11.57123 -11.19809 -11.15500 -11.07708 -10.97924 -10.90370 -10.84573 -10.51962 -10.44585 -10.29211 -10.26598 -9.96110 -9.25815 -9.18362 -8.87725 -8.74603 -8.46250 -7.88808 -6.03236 -4.12038 2.40130 2.53694 3.02332 3.29609 3.37023 3.38782 3.69162 4.39374 4.44870 4.65121 4.71092 4.73493 4.89824 5.05733 5.15787 5.21170 5.24844 5.27591 5.39214 5.42763 5.45331 5.57529 5.59106 5.60015 5.66277 5.71369 5.80778 5.82689 5.89407 5.91685 5.94584 6.04131 6.10594 6.14367 6.26674 6.30301 6.40969 6.52260 6.58844 6.63825 6.79115 6.91859 7.00947 7.11630 7.20199 7.55131 7.80567 7.89637 8.00502 8.05244 8.30966 8.50108 8.91992 9.53877 11.02232 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.019598 B = 0.003918 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.364282 B = 7145.248263 C = 7701.687256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C -0.143 4.143 4 C 0.117 3.883 5 N -0.597 5.597 6 C 0.518 3.482 7 O -0.517 6.517 8 C 0.514 3.486 9 O -0.508 6.508 10 N -0.586 5.586 11 C 0.108 3.892 12 C -0.135 4.135 13 C -0.110 4.110 14 C 0.038 3.962 15 H 0.031 0.969 16 C -0.520 4.520 17 H 0.059 0.941 18 C 0.063 3.937 19 N -0.881 5.881 20 Si 0.893 3.107 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.111 3.889 25 C 0.134 3.866 26 C -0.197 4.197 27 C -0.198 4.198 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.264 0.736 44 H 0.049 0.951 45 H 0.125 0.875 46 H 0.091 0.909 47 H 0.087 0.913 48 H 0.070 0.930 49 H 0.067 0.933 50 H 0.053 0.947 51 H 0.066 0.934 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.814 18.823 2.496 20.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.133 4.133 3 C -0.201 4.201 4 C -0.006 4.006 5 N -0.333 5.333 6 C 0.302 3.698 7 O -0.392 6.392 8 C 0.297 3.703 9 O -0.385 6.385 10 N -0.319 5.319 11 C -0.015 4.015 12 C -0.173 4.173 13 C -0.147 4.147 14 C 0.019 3.981 15 H 0.049 0.951 16 C -0.559 4.559 17 H 0.077 0.923 18 C -0.140 4.140 19 N -0.518 5.518 20 Si 0.721 3.279 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.008 4.008 25 C 0.031 3.969 26 C -0.255 4.255 27 C -0.256 4.256 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.093 0.907 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.143 0.857 46 H 0.109 0.891 47 H 0.105 0.895 48 H 0.089 0.911 49 H 0.086 0.914 50 H 0.072 0.928 51 H 0.085 0.915 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.082 18.478 2.962 19.677 hybrid contribution -0.311 -0.811 -0.158 0.883 sum -6.393 17.667 2.804 18.996 Atomic orbital electron populations 1.22040 0.95027 1.02611 1.01624 1.21512 0.96339 0.96422 0.99017 1.21756 1.01259 0.95269 1.01807 1.21630 1.01842 0.79372 0.97734 1.48186 1.18936 1.07401 1.58741 1.20664 0.84947 0.86819 0.77389 1.90755 1.20600 1.78461 1.49341 1.19853 0.78241 0.88084 0.84113 1.90703 1.54079 1.53898 1.39806 1.48630 1.59420 1.11418 1.12434 1.21771 0.99991 0.91432 0.88306 1.21959 1.00888 0.98703 0.95751 1.21627 0.99870 0.92938 1.00304 1.18992 0.96691 0.93291 0.89097 0.95102 1.21060 1.39064 0.91558 1.04206 0.92262 1.25053 0.94778 0.99087 0.95079 1.69870 1.40432 1.32864 1.08638 0.86578 0.78961 0.84651 0.77729 1.20678 1.21177 1.19902 1.22453 0.98465 0.75487 1.04419 1.21265 0.83401 0.97962 0.94251 1.22924 1.01024 1.02887 0.98634 1.22793 1.03861 1.01885 0.97053 0.92713 0.91617 0.92813 0.90750 0.92420 0.92426 0.92658 0.90390 0.89574 0.91195 0.91610 0.92029 0.91798 0.92790 0.93073 0.92571 0.93222 0.85704 0.89100 0.89455 0.91136 0.91375 0.92751 0.91544 0.88008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 8.53 37.16 0.32 -0.94 16 2 C -0.11 -1.06 3.12 -90.62 -0.28 -1.34 16 3 C -0.14 -1.10 9.19 37.16 0.34 -0.75 16 4 C 0.12 1.25 4.86 -4.05 -0.02 1.23 16 5 N -0.60 -7.98 2.27 -166.61 -0.38 -8.36 16 6 C 0.52 9.24 4.98 -11.59 -0.06 9.19 16 7 O -0.52 -10.53 16.64 5.50 0.09 -10.44 16 8 C 0.51 10.44 3.96 -11.58 -0.05 10.39 16 9 O -0.51 -11.92 13.62 5.49 0.07 -11.84 16 10 N -0.59 -11.40 1.67 -173.27 -0.29 -11.69 16 11 C 0.11 1.72 4.56 -3.71 -0.02 1.70 16 12 C -0.13 -2.23 6.08 -26.61 -0.16 -2.39 16 13 C -0.11 -2.13 5.11 -26.69 -0.14 -2.27 16 14 C 0.04 0.93 2.25 -91.65 -0.21 0.72 16 15 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 16 C -0.52 -13.73 8.57 -34.44 -0.30 -14.03 16 17 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 18 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 19 N -0.88 -25.16 11.38 55.43 0.63 -24.53 16 20 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 C 0.11 2.56 5.22 -3.71 -0.02 2.54 16 25 C 0.13 1.57 2.15 -67.93 -0.15 1.43 16 26 C -0.20 -2.42 6.95 37.16 0.26 -2.16 16 27 C -0.20 -2.63 9.15 37.16 0.34 -2.29 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.57 4.11 -51.93 -0.21 0.36 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.66 7.99 -51.93 -0.41 0.25 16 36 H 0.09 1.05 7.35 -51.93 -0.38 0.67 16 37 H 0.07 0.96 7.25 -51.93 -0.38 0.59 16 38 H 0.07 0.99 6.31 -51.93 -0.33 0.66 16 39 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.13 3.38 5.14 -51.93 -0.27 3.11 16 46 H 0.09 0.82 7.01 -51.93 -0.36 0.45 16 47 H 0.09 1.39 4.31 -51.93 -0.22 1.16 16 48 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 49 H 0.07 0.79 4.73 -51.93 -0.25 0.54 16 50 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 51 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 52 H 0.10 1.77 4.12 -51.93 -0.21 1.56 16 LS Contribution 382.93 15.07 5.77 5.77 Total: -1.00 -30.65 382.93 -8.26 -38.91 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -8.91 Total: 3.70 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -0.23 Total: 2.63 kcal Atomic # 7 Polarization: -44.55 SS G_CDS: -0.04 Total: -44.58 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: 0.17 Total: -22.29 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.65 -8.26 -38.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329631369.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.437 kcal (2) G-P(sol) polarization free energy of solvation -30.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds