Wall clock time and date at job start Tue Mar 31 2020 13:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47144 * 2 1 4 4 C 1.52990 * 109.47318 * 119.99928 * 2 1 3 5 5 N 1.46500 * 109.47290 * 66.21420 * 4 2 1 6 6 C 1.34775 * 120.00002 * 90.45538 * 5 4 2 7 7 O 1.21348 * 119.99999 * 4.97463 * 6 5 4 8 8 C 1.49451 * 119.99864 * 184.96764 * 6 5 4 9 9 O 1.21356 * 120.00369 * 275.39744 * 8 6 5 10 10 N 1.34781 * 119.99946 * 95.39760 * 8 6 5 11 11 C 1.46925 * 120.62737 * 355.50985 * 10 8 6 12 12 C 1.53199 * 108.77404 * 126.41143 * 11 10 8 13 13 C 1.53042 * 109.33777 * 54.61792 * 12 11 10 14 14 C 1.53043 * 109.53920 * 298.68272 * 13 12 11 15 15 H 1.09003 * 109.49631 * 301.34760 * 14 13 12 16 16 C 1.50697 * 109.49721 * 181.28753 * 14 13 12 17 17 H 1.08003 * 120.00003 * 0.06151 * 16 14 13 18 18 C 1.37876 * 120.00245 * 180.34120 * 16 14 13 19 19 N 1.31516 * 119.99631 * 359.72048 * 18 16 14 20 20 Si 1.86793 * 120.00375 * 179.72189 * 18 16 14 21 21 H 1.48503 * 109.46957 * 89.99671 * 20 18 16 22 22 H 1.48492 * 109.47289 * 209.99671 * 20 18 16 23 23 H 1.48499 * 109.47184 * 330.00006 * 20 18 16 24 24 C 1.46921 * 120.62905 * 175.52763 * 10 8 6 25 25 C 1.46506 * 120.00006 * 270.46524 * 5 4 2 26 26 C 1.52998 * 109.47291 * 126.63161 * 25 5 4 27 27 C 1.53002 * 109.46599 * 246.62963 * 25 5 4 28 28 H 1.09005 * 109.47123 * 63.43710 * 1 2 3 29 29 H 1.08997 * 109.47001 * 183.43988 * 1 2 3 30 30 H 1.08996 * 109.46979 * 303.44007 * 1 2 3 31 31 H 1.09002 * 109.47190 * 240.00059 * 2 1 3 32 32 H 1.09001 * 109.47181 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46867 * 300.00078 * 3 2 1 34 34 H 1.09002 * 109.47029 * 59.99961 * 3 2 1 35 35 H 1.08996 * 109.47476 * 306.21665 * 4 2 1 36 36 H 1.09007 * 109.47708 * 186.21401 * 4 2 1 37 37 H 1.08998 * 109.58592 * 246.19360 * 11 10 8 38 38 H 1.08996 * 109.58963 * 6.62939 * 11 10 8 39 39 H 1.08998 * 109.49396 * 174.58100 * 12 11 10 40 40 H 1.08995 * 109.49604 * 294.67990 * 12 11 10 41 41 H 1.08994 * 109.48352 * 178.64553 * 13 12 11 42 42 H 1.09000 * 109.43268 * 58.68438 * 13 12 11 43 43 H 0.96996 * 119.99772 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.58479 * 113.80302 * 24 10 8 45 45 H 1.08999 * 109.70848 * 353.44684 * 24 10 8 46 46 H 1.08994 * 109.46969 * 6.62840 * 25 5 4 47 47 H 1.08998 * 109.47385 * 77.50253 * 26 25 5 48 48 H 1.09006 * 109.46939 * 197.50444 * 26 25 5 49 49 H 1.09001 * 109.47116 * 317.50343 * 26 25 5 50 50 H 1.09001 * 109.47442 * 64.21994 * 27 25 5 51 51 H 1.09008 * 109.46455 * 184.21963 * 27 25 5 52 52 H 1.08998 * 109.47387 * 304.21485 * 27 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6776 -2.1388 1.1768 6 6 2.5219 -3.0220 0.6080 7 8 3.6193 -2.6601 0.2374 8 6 2.1067 -4.4471 0.4339 9 8 2.2446 -5.2352 1.3464 10 7 1.5790 -4.8570 -0.7366 11 6 1.3148 -3.8959 -1.8160 12 6 1.9998 -4.3895 -3.0943 13 6 1.5392 -5.8172 -3.3972 14 6 1.9423 -6.7404 -2.2451 15 1 3.0239 -6.7075 -2.1140 16 6 1.5163 -8.1515 -2.5586 17 1 1.0095 -8.3688 -3.4873 18 6 1.7682 -9.1640 -1.6574 19 7 2.3852 -8.8993 -0.5265 20 14 1.2333 -10.9118 -2.0425 21 1 2.3251 -11.6166 -2.7611 22 1 0.9311 -11.6273 -0.7769 23 1 0.0183 -10.8809 -2.8959 24 6 1.2567 -6.2734 -0.9572 25 6 0.3973 -2.5964 1.7226 26 6 -0.3624 -3.3813 0.6513 27 6 0.6518 -3.4987 2.9317 28 1 -0.3633 0.4596 -0.9192 29 1 -0.3633 -1.0258 0.0617 30 1 -0.3633 0.5663 0.8575 31 1 1.8933 -0.5138 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 1.5887 -0.2757 2.1357 36 1 3.1244 -0.6259 1.3066 37 1 0.2403 -3.8204 -1.9831 38 1 1.7136 -2.9194 -1.5415 39 1 1.7325 -3.7370 -3.9255 40 1 3.0808 -4.3782 -2.9553 41 1 2.0067 -6.1620 -4.3195 42 1 0.4553 -5.8319 -3.5121 43 1 2.5628 -9.6117 0.1073 44 1 0.1774 -6.3917 -1.0542 45 1 1.6152 -6.8672 -0.1164 46 1 -0.1951 -1.7348 2.0304 47 1 0.0603 -4.3824 0.5660 48 1 -1.4136 -3.4533 0.9307 49 1 -0.2753 -2.8674 -0.3060 50 1 1.1261 -2.9195 3.7239 51 1 -0.2959 -3.8992 3.2919 52 1 1.3062 -4.3203 2.6406 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329631369.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:58 Heat of formation + Delta-G solvation = -86.905726 kcal Electronic energy + Delta-G solvation = -30879.716284 eV Core-core repulsion = 27071.667702 eV Total energy + Delta-G solvation = -3808.048582 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.45966 -40.13125 -38.49976 -38.24802 -36.06961 -35.35076 -33.60383 -32.51383 -31.67996 -28.68316 -28.34191 -27.61228 -27.05019 -26.39628 -24.51480 -23.52197 -22.84846 -21.20837 -20.80529 -19.74171 -18.66752 -18.26808 -17.83820 -17.68623 -16.58080 -16.42251 -16.08770 -15.97769 -15.61569 -15.32647 -15.17008 -15.00521 -14.67005 -14.49739 -14.41730 -14.17118 -13.92102 -13.71417 -13.71152 -13.30008 -13.01365 -12.95690 -12.89725 -12.80018 -12.63067 -12.50674 -12.38124 -12.26238 -12.21581 -11.95258 -11.86956 -11.73862 -11.66960 -11.58577 -11.44187 -11.12333 -10.97539 -10.56476 -10.46405 -9.87632 -9.51818 -8.10859 -6.27780 0.98289 1.16852 1.41917 1.43197 1.53754 1.54131 2.34127 2.43767 3.10790 3.18922 3.75336 3.88097 3.90796 3.96676 4.05050 4.11219 4.18408 4.23447 4.26690 4.47766 4.50234 4.65000 4.66711 4.68904 4.70661 4.75907 4.78500 4.80252 4.83841 4.89698 4.92195 5.03332 5.05787 5.09152 5.15436 5.20826 5.24167 5.29130 5.30287 5.32545 5.38550 5.49817 5.54164 5.57819 5.62875 5.87068 5.95577 6.00565 6.29020 6.35612 6.69974 6.82835 6.93077 7.42640 8.92918 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.019598 B = 0.003918 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.364282 B = 7145.248263 C = 7701.687256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.109 4.109 3 C -0.139 4.139 4 C 0.110 3.890 5 N -0.579 5.579 6 C 0.523 3.477 7 O -0.553 6.553 8 C 0.509 3.491 9 O -0.552 6.552 10 N -0.584 5.584 11 C 0.107 3.893 12 C -0.129 4.129 13 C -0.102 4.102 14 C 0.034 3.966 15 H -0.019 1.019 16 C -0.532 4.532 17 H 0.066 0.934 18 C 0.011 3.989 19 N -0.916 5.916 20 Si 0.958 3.042 21 H -0.279 1.279 22 H -0.288 1.288 23 H -0.259 1.259 24 C 0.129 3.871 25 C 0.133 3.867 26 C -0.196 4.196 27 C -0.198 4.198 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.112 0.888 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.106 0.894 40 H 0.039 0.961 41 H 0.053 0.947 42 H 0.068 0.932 43 H 0.260 0.740 44 H 0.056 0.944 45 H 0.080 0.920 46 H 0.136 0.864 47 H 0.048 0.952 48 H 0.095 0.905 49 H 0.078 0.922 50 H 0.064 0.936 51 H 0.081 0.919 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.693 21.603 1.714 23.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.129 4.129 3 C -0.197 4.197 4 C -0.011 4.011 5 N -0.312 5.312 6 C 0.306 3.694 7 O -0.431 6.431 8 C 0.293 3.707 9 O -0.431 6.431 10 N -0.316 5.316 11 C -0.015 4.015 12 C -0.167 4.167 13 C -0.139 4.139 14 C 0.015 3.985 15 H -0.001 1.001 16 C -0.570 4.570 17 H 0.084 0.916 18 C -0.188 4.188 19 N -0.555 5.555 20 Si 0.784 3.216 21 H -0.205 1.205 22 H -0.214 1.214 23 H -0.183 1.183 24 C 0.007 3.993 25 C 0.031 3.969 26 C -0.253 4.253 27 C -0.256 4.256 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.130 0.870 36 H 0.086 0.914 37 H 0.120 0.880 38 H 0.096 0.904 39 H 0.124 0.876 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.098 0.902 46 H 0.154 0.846 47 H 0.067 0.933 48 H 0.114 0.886 49 H 0.097 0.903 50 H 0.083 0.917 51 H 0.100 0.900 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.003 21.311 2.158 23.235 hybrid contribution 0.583 -1.638 0.125 1.743 sum -8.419 19.673 2.283 21.520 Atomic orbital electron populations 1.22021 0.93371 1.02637 1.02940 1.21459 0.97616 0.96871 0.96925 1.21730 1.00694 0.94236 1.03062 1.21949 1.01335 0.77583 1.00192 1.48264 1.18584 1.07907 1.56411 1.20155 0.85064 0.86026 0.78157 1.90738 1.22036 1.78646 1.51646 1.20384 0.77450 0.89253 0.83653 1.90687 1.55670 1.55461 1.41257 1.48546 1.59132 1.10600 1.13315 1.22046 1.01941 0.90829 0.86649 1.21931 0.99453 0.97672 0.97647 1.21500 1.00846 0.93594 0.97991 1.18953 0.93670 0.94110 0.91748 1.00132 1.21475 1.38496 0.92888 1.04185 0.91627 1.25884 0.94881 1.03240 0.94841 1.70077 1.41987 1.33709 1.09721 0.85549 0.78942 0.79673 0.77466 1.20533 1.21371 1.18297 1.21851 0.98137 0.77287 1.01978 1.21526 0.82714 0.99254 0.93374 1.22885 1.02271 1.00729 0.99460 1.22739 1.03787 1.00943 0.98127 0.92021 0.92192 0.90925 0.93106 0.93396 0.91632 0.90927 0.86966 0.91408 0.87979 0.90365 0.87574 0.94175 0.92808 0.91332 0.93121 0.92615 0.90198 0.84629 0.93348 0.88593 0.90338 0.91697 0.90010 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.53 71.98 0.61 -1.15 16 2 C -0.11 -1.72 3.12 -10.80 -0.03 -1.76 16 3 C -0.14 -1.72 9.19 71.98 0.66 -1.06 16 4 C 0.11 2.10 4.86 86.38 0.42 2.52 16 5 N -0.58 -14.60 2.27 -799.41 -1.82 -16.42 16 6 C 0.52 18.96 4.98 87.27 0.43 19.39 16 7 O -0.55 -23.24 16.64 -3.24 -0.05 -23.30 16 8 C 0.51 21.61 3.96 87.27 0.35 21.96 16 9 O -0.55 -27.87 13.62 -3.26 -0.04 -27.91 16 10 N -0.58 -23.36 1.67 -820.47 -1.37 -24.73 16 11 C 0.11 3.24 4.56 86.37 0.39 3.64 16 12 C -0.13 -4.09 6.08 30.68 0.19 -3.90 16 13 C -0.10 -3.88 5.11 30.62 0.16 -3.73 16 14 C 0.03 1.73 2.25 -11.46 -0.03 1.70 16 15 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 16 C -0.53 -28.75 8.57 25.60 0.22 -28.53 16 17 H 0.07 3.38 7.74 -2.91 -0.02 3.36 16 18 C 0.01 0.61 5.30 84.65 0.45 1.06 16 19 N -0.92 -55.31 11.38 21.45 0.24 -55.06 16 20 Si 0.96 43.70 29.54 68.60 2.03 45.73 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 23 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 24 C 0.13 6.20 5.22 86.36 0.45 6.65 16 25 C 0.13 2.78 2.15 44.99 0.10 2.87 16 26 C -0.20 -4.36 6.95 71.98 0.50 -3.86 16 27 C -0.20 -5.07 9.15 71.98 0.66 -4.41 16 28 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.06 0.77 4.11 -2.39 -0.01 0.76 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.67 16 33 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.11 1.41 7.99 -2.39 -0.02 1.39 16 36 H 0.07 1.59 7.35 -2.38 -0.02 1.57 16 37 H 0.10 2.47 7.25 -2.39 -0.02 2.45 16 38 H 0.08 2.22 6.31 -2.39 -0.02 2.21 16 39 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 44 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 45 H 0.08 4.64 5.14 -2.39 -0.01 4.63 16 46 H 0.14 1.73 7.01 -2.39 -0.02 1.71 16 47 H 0.05 1.52 4.31 -2.39 -0.01 1.50 16 48 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 49 H 0.08 1.56 4.73 -2.39 -0.01 1.55 16 50 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 51 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 52 H 0.06 2.11 4.12 -2.39 -0.01 2.10 16 Total: -1.00 -74.04 382.93 5.41 -68.63 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.90 Total: 21.68 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 5.53 Total: 11.38 kcal Atomic # 7 Polarization: -93.26 SS G_CDS: -2.94 Total: -96.21 kcal Atomic # 8 Polarization: -51.11 SS G_CDS: -0.10 Total: -51.21 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -74.04 5.41 -68.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329631369.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.280 kcal (2) G-P(sol) polarization free energy of solvation -74.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds