Wall clock time and date at job start Tue Mar 31 2020 15:36:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48500 * 109.47146 * 59.99948 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21279 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 C 1.53001 * 109.47399 * 180.02562 * 16 14 13 18 18 H 1.08995 * 109.46863 * 54.99852 * 17 16 14 19 19 C 1.53002 * 109.47231 * 175.00326 * 17 16 14 20 20 N 1.46501 * 109.46593 * 294.99941 * 17 16 14 21 21 C 1.34785 * 119.99573 * 154.99959 * 20 17 16 22 22 O 1.21283 * 119.99916 * 0.02562 * 21 20 17 23 23 C 1.50698 * 119.99951 * 180.02562 * 21 20 17 24 24 C 1.52998 * 109.47402 * 300.00277 * 23 21 20 25 25 C 1.52999 * 109.47381 * 179.97438 * 24 23 21 26 26 C 1.52995 * 109.46903 * 59.99928 * 25 24 23 27 27 C 1.52999 * 109.47339 * 299.99679 * 26 25 24 28 28 C 1.52999 * 109.46860 * 60.00295 * 27 26 25 29 29 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 30 30 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 32 32 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 33 33 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 34 34 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 35 35 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 36 36 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 37 37 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 38 38 H 1.09001 * 109.46754 * 60.00134 * 19 17 16 39 39 H 1.09000 * 109.46986 * 179.97438 * 19 17 16 40 40 H 1.08995 * 109.46948 * 300.00181 * 19 17 16 41 41 H 0.96994 * 120.00731 * 335.00019 * 20 17 16 42 42 H 1.09006 * 109.47086 * 60.00063 * 23 21 20 43 43 H 1.09006 * 109.46825 * 299.99945 * 24 23 21 44 44 H 1.09003 * 109.47248 * 59.99277 * 24 23 21 45 45 H 1.08992 * 109.47259 * 299.99847 * 25 24 23 46 46 H 1.09001 * 109.46979 * 179.97438 * 25 24 23 47 47 H 1.09005 * 109.47264 * 179.97438 * 26 25 24 48 48 H 1.08998 * 109.47632 * 59.99853 * 26 25 24 49 49 H 1.08998 * 109.46900 * 300.00622 * 27 26 25 50 50 H 1.08998 * 109.47469 * 180.02562 * 27 26 25 51 51 H 1.09001 * 109.47710 * 180.02562 * 28 27 26 52 52 H 1.09006 * 109.47149 * 60.00089 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5325 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6305 0.4601 16 6 0.0606 3.3290 2.6792 17 6 -1.3598 3.8852 2.5606 18 1 -2.0393 3.0862 2.2642 19 6 -1.7993 4.4538 3.9114 20 7 -1.3855 4.9475 1.5520 21 6 -2.5340 5.2392 0.9098 22 8 -3.5462 4.6226 1.1672 23 6 -2.5605 6.3314 -0.1281 24 6 -2.1502 7.6572 0.5160 25 6 -2.1764 8.7660 -0.5379 26 6 -3.5898 8.8927 -1.1098 27 6 -4.0001 7.5670 -1.7540 28 6 -3.9739 6.4582 -0.7001 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 5.9548 0.8552 -0.5318 35 1 2.2902 2.1166 1.9978 36 1 0.0991 2.6017 3.4901 37 1 0.7539 4.1436 2.8885 38 1 -1.1197 5.2529 4.2076 39 1 -2.8110 4.8505 3.8268 40 1 -1.7800 3.6635 4.6618 41 1 -0.5761 5.4409 1.3464 42 1 -1.8647 6.0868 -0.9308 43 1 -2.8460 7.9018 1.3187 44 1 -1.1431 7.5670 0.9231 45 1 -1.4805 8.5212 -1.3402 46 1 -1.8846 9.7105 -0.0788 47 1 -3.6087 9.6829 -1.8603 48 1 -4.2859 9.1374 -0.3075 49 1 -3.3040 7.3222 -2.5563 50 1 -5.0068 7.6573 -2.1618 51 1 -4.2657 5.5135 -1.1591 52 1 -4.6699 6.7030 0.1023 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183797441.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:14 Heat of formation + Delta-G solvation = -118.669640 kcal Electronic energy + Delta-G solvation = -29069.390117 eV Core-core repulsion = 25259.964149 eV Total energy + Delta-G solvation = -3809.425968 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.30688 -39.25191 -37.73847 -35.92017 -34.91307 -32.51441 -32.19560 -31.48360 -30.90282 -30.33646 -28.22740 -26.79469 -24.09617 -22.78901 -22.41778 -21.71645 -20.51944 -20.27436 -19.72765 -19.51177 -17.86988 -17.13591 -16.41813 -16.24863 -15.52754 -15.20344 -14.92626 -14.84261 -14.35961 -14.27035 -13.95066 -13.56852 -13.45580 -13.11341 -12.95495 -12.73363 -12.69269 -12.45040 -12.43407 -12.39850 -12.21974 -12.00990 -11.77324 -11.49226 -11.41993 -11.32384 -11.00397 -10.90699 -10.80998 -10.69480 -10.59080 -10.45604 -10.29267 -9.91241 -9.59764 -9.50921 -9.19946 -9.06021 -8.87903 -8.37192 -8.08389 -6.60944 -4.25335 2.83322 3.20571 3.32121 3.36559 3.41670 3.56585 3.93078 4.38744 4.47072 4.49338 4.54884 4.72914 4.99969 5.01542 5.08907 5.09524 5.13424 5.20803 5.22758 5.28334 5.33972 5.41700 5.44109 5.50857 5.56665 5.63114 5.69308 5.80823 5.87075 5.90526 5.96337 5.98917 6.05895 6.06797 6.09693 6.16262 6.18415 6.27415 6.28032 6.62920 6.68173 6.79367 6.95216 7.04547 7.34964 7.40498 7.62394 7.65536 8.19910 8.40885 8.46896 8.68154 8.98611 9.43959 10.79531 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.012855 B = 0.003365 C = 0.003002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.678738 B = 8317.837673 C = 9323.957288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.139 4.139 3 C 0.248 3.752 4 H 0.040 0.960 5 C -0.617 4.617 6 H 0.060 0.940 7 C 0.039 3.961 8 N -0.899 5.899 9 Si 1.040 2.960 10 H -0.284 1.284 11 H -0.269 1.269 12 H -0.281 1.281 13 N -0.704 5.704 14 C 0.496 3.504 15 O -0.540 6.540 16 C -0.155 4.155 17 C 0.160 3.840 18 H 0.095 0.905 19 C -0.161 4.161 20 N -0.711 5.711 21 C 0.527 3.473 22 O -0.546 6.546 23 C -0.108 4.108 24 C -0.108 4.108 25 C -0.119 4.119 26 C -0.121 4.121 27 C -0.121 4.121 28 C -0.097 4.097 29 H 0.050 0.950 30 H 0.029 0.971 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.268 0.732 35 H 0.391 0.609 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.055 0.945 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.396 0.604 42 H 0.097 0.903 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.064 0.936 47 H 0.060 0.940 48 H 0.061 0.939 49 H 0.063 0.937 50 H 0.063 0.937 51 H 0.069 0.931 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.166 14.275 6.940 21.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.178 4.178 3 C 0.145 3.855 4 H 0.058 0.942 5 C -0.655 4.655 6 H 0.078 0.922 7 C -0.168 4.168 8 N -0.532 5.532 9 Si 0.868 3.132 10 H -0.209 1.209 11 H -0.195 1.195 12 H -0.207 1.207 13 N -0.352 5.352 14 C 0.280 3.720 15 O -0.418 6.418 16 C -0.196 4.196 17 C 0.055 3.945 18 H 0.113 0.887 19 C -0.220 4.220 20 N -0.362 5.362 21 C 0.313 3.687 22 O -0.423 6.423 23 C -0.129 4.129 24 C -0.146 4.146 25 C -0.156 4.156 26 C -0.158 4.158 27 C -0.158 4.158 28 C -0.135 4.135 29 H 0.069 0.931 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.224 0.776 36 H 0.120 0.880 37 H 0.110 0.890 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.230 0.770 42 H 0.116 0.884 43 H 0.085 0.915 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.082 0.918 47 H 0.079 0.921 48 H 0.080 0.920 49 H 0.082 0.918 50 H 0.082 0.918 51 H 0.088 0.912 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.355 13.254 4.875 20.862 hybrid contribution 0.962 0.666 1.989 2.308 sum -14.392 13.920 6.863 21.167 Atomic orbital electron populations 1.21865 0.97301 0.98812 1.01923 1.22359 0.93810 0.99872 1.01731 1.19003 0.95630 0.88508 0.82372 0.94226 1.22098 0.89811 1.49506 1.04052 0.92151 1.25670 0.97530 0.92358 1.01212 1.70875 1.07093 1.40911 1.34306 0.84109 0.75493 0.77685 0.75893 1.20936 1.19514 1.20705 1.46274 1.14715 1.56177 1.18012 1.20386 0.82697 0.79563 0.89309 1.90704 1.50583 1.59425 1.41105 1.22082 0.97569 1.01819 0.98084 1.20609 0.95851 0.90526 0.87561 0.88732 1.22185 1.01986 1.01368 0.96453 1.45853 1.11854 1.37572 1.40889 1.20470 0.83105 0.83845 0.81283 1.90657 1.33610 1.52409 1.65610 1.21353 1.00239 0.93823 0.97490 1.21510 1.01499 0.93339 0.98268 1.21532 0.97360 0.98221 0.98515 1.21555 0.96747 0.97397 1.00109 1.21570 1.01478 0.94691 0.98100 1.21315 0.94697 0.99061 0.98443 0.93110 0.95184 0.93308 0.91422 0.93194 0.92128 0.77613 0.88030 0.88990 0.92549 0.91960 0.91644 0.76996 0.88450 0.91541 0.91583 0.91601 0.91774 0.92077 0.92034 0.91829 0.91797 0.91205 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.53 37.15 0.32 -2.57 16 2 C -0.14 -3.08 5.28 -26.73 -0.14 -3.22 16 3 C 0.25 5.75 1.82 -69.08 -0.13 5.62 16 4 H 0.04 1.01 6.26 -51.93 -0.32 0.68 16 5 C -0.62 -16.28 9.01 -34.44 -0.31 -16.59 16 6 H 0.06 1.66 7.96 -52.48 -0.42 1.24 16 7 C 0.04 1.08 5.32 -17.82 -0.09 0.98 16 8 N -0.90 -26.46 13.69 55.43 0.76 -25.70 16 9 Si 1.04 24.94 26.27 -169.99 -4.47 20.48 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.27 -6.08 5.67 56.52 0.32 -5.76 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 13 N -0.70 -13.24 5.03 -54.94 -0.28 -13.51 16 14 C 0.50 8.50 6.29 -10.99 -0.07 8.43 16 15 O -0.54 -11.10 12.49 5.56 0.07 -11.03 16 16 C -0.15 -1.83 5.24 -27.88 -0.15 -1.98 16 17 C 0.16 2.01 2.14 -67.93 -0.15 1.87 16 18 H 0.09 1.51 7.39 -51.93 -0.38 1.13 16 19 C -0.16 -1.62 9.48 37.16 0.35 -1.26 16 20 N -0.71 -9.02 4.11 -53.80 -0.22 -9.24 16 21 C 0.53 7.50 7.12 -10.98 -0.08 7.42 16 22 O -0.55 -9.70 15.65 5.55 0.09 -9.61 16 23 C -0.11 -1.21 2.52 -91.77 -0.23 -1.45 16 24 C -0.11 -0.95 5.10 -26.73 -0.14 -1.08 16 25 C -0.12 -0.92 5.92 -26.73 -0.16 -1.07 16 26 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 27 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 28 C -0.10 -1.08 4.49 -26.73 -0.12 -1.20 16 29 H 0.05 1.09 7.88 -51.93 -0.41 0.68 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.98 5.63 -51.92 -0.29 0.68 16 32 H 0.07 1.58 4.74 -51.92 -0.25 1.33 16 33 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.27 7.81 8.73 -40.82 -0.36 7.45 16 35 H 0.39 6.54 8.53 -40.82 -0.35 6.20 16 36 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.40 4.36 8.02 -40.82 -0.33 4.04 16 42 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.52 7.56 -51.93 -0.39 0.13 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 48 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 49 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 52 H 0.07 0.78 8.10 -51.93 -0.42 0.36 16 LS Contribution 398.25 15.07 6.00 6.00 Total: -1.00 -32.40 398.25 -9.01 -41.40 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -9.56 Total: 9.63 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -1.40 Total: -8.41 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 0.26 Total: -48.46 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: 0.16 Total: -20.64 kcal Atomic # 14 Polarization: 24.94 SS G_CDS: -4.47 Total: 20.48 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -32.40 -9.01 -41.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183797441.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.266 kcal (2) G-P(sol) polarization free energy of solvation -32.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds