Wall clock time and date at job start Tue Mar 31 2020 15:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47284 * 2 1 4 4 H 1.09000 * 109.47304 * 54.99611 * 3 2 1 5 5 C 1.50697 * 109.47627 * 174.99972 * 3 2 1 6 6 H 1.07999 * 120.00204 * 119.99540 * 5 3 2 7 7 C 1.37884 * 119.99776 * 300.27691 * 5 3 2 8 8 N 1.31507 * 119.99873 * 359.71689 * 7 5 3 9 9 Si 1.86797 * 119.99898 * 179.72385 * 7 5 3 10 10 H 1.48498 * 109.47321 * 89.99285 * 9 7 5 11 11 H 1.48502 * 109.47002 * 209.99705 * 9 7 5 12 12 H 1.48507 * 109.47008 * 329.99497 * 9 7 5 13 13 N 1.46504 * 109.46760 * 295.00090 * 3 2 1 14 14 C 1.34774 * 120.00561 * 84.99982 * 13 3 2 15 15 O 1.21279 * 119.99284 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00514 * 180.02562 * 14 13 3 17 17 H 1.08999 * 109.49832 * 59.99445 * 16 14 13 18 18 C 1.53046 * 109.49457 * 299.93179 * 16 14 13 19 19 C 1.53034 * 109.53913 * 178.71383 * 18 16 14 20 20 C 1.53197 * 109.33796 * 61.31456 * 19 18 16 21 21 N 1.46923 * 108.77759 * 305.38391 * 20 19 18 22 22 C 1.34775 * 120.62863 * 233.62455 * 21 20 19 23 23 O 1.21285 * 119.99971 * 174.17425 * 22 21 20 24 24 C 1.50700 * 119.99991 * 354.17896 * 22 21 20 25 25 C 1.53004 * 109.46817 * 187.70059 * 24 22 21 26 26 C 1.52999 * 109.47145 * 307.69643 * 24 22 21 27 27 C 1.53000 * 109.47228 * 67.69951 * 24 22 21 28 28 C 1.46923 * 118.73811 * 53.60777 * 21 20 19 29 29 H 1.08997 * 109.47090 * 299.99956 * 1 2 3 30 30 H 1.08997 * 109.46983 * 60.00410 * 1 2 3 31 31 H 1.09006 * 109.47154 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47484 * 239.99693 * 2 1 3 33 33 H 1.09005 * 109.47267 * 119.99737 * 2 1 3 34 34 H 0.97005 * 119.99840 * 180.02562 * 8 7 5 35 35 H 0.97003 * 119.99795 * 264.99814 * 13 3 2 36 36 H 1.08998 * 109.46288 * 298.70565 * 18 16 14 37 37 H 1.09007 * 109.45738 * 58.66470 * 18 16 14 38 38 H 1.09000 * 109.47067 * 301.37041 * 19 18 16 39 39 H 1.09000 * 109.50150 * 181.28428 * 19 18 16 40 40 H 1.08998 * 109.58347 * 185.59055 * 20 19 18 41 41 H 1.09000 * 109.69755 * 65.24065 * 20 19 18 42 42 H 1.08995 * 109.47291 * 60.00110 * 25 24 22 43 43 H 1.09000 * 109.46910 * 179.97438 * 25 24 22 44 44 H 1.09005 * 109.47106 * 299.99350 * 25 24 22 45 45 H 1.09002 * 109.46793 * 70.29737 * 26 24 22 46 46 H 1.08996 * 109.47078 * 190.30009 * 26 24 22 47 47 H 1.08999 * 109.47091 * 310.30121 * 26 24 22 48 48 H 1.08998 * 109.47071 * 72.25765 * 27 24 22 49 49 H 1.08997 * 109.46822 * 192.25836 * 27 24 22 50 50 H 1.08991 * 109.47287 * 312.25684 * 27 24 22 51 51 H 1.09001 * 109.58642 * 186.60596 * 28 21 20 52 52 H 1.08998 * 109.70824 * 66.24896 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1435 0.8734 1.2253 8 7 3.4064 0.3321 2.1704 9 14 6.0054 0.8688 1.3751 10 1 6.4483 2.0984 2.0802 11 1 6.4372 -0.3258 2.1444 12 1 6.6110 0.8302 0.0197 13 7 1.6524 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3395 2.6319 -0.4346 16 6 0.0362 3.3375 -2.6550 17 1 0.0671 2.6131 -3.4689 18 6 1.0057 4.4834 -2.9539 19 6 0.6206 5.1473 -4.2779 20 6 -0.7930 5.7265 -4.1627 21 7 -1.7077 4.6597 -3.7342 22 6 -2.8226 4.3863 -4.4405 23 8 -3.5140 3.4366 -4.1387 24 6 -3.2099 5.2604 -5.6054 25 6 -4.5971 4.8553 -6.1079 26 6 -3.2367 6.7234 -5.1583 27 6 -2.1893 5.0901 -6.7324 28 6 -1.3839 3.8963 -2.5214 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8297 -0.0692 2.9455 35 1 2.2719 2.1230 -1.9978 36 1 0.9566 5.2193 -2.1514 37 1 2.0203 4.0914 -3.0253 38 1 0.6461 4.4063 -5.0769 39 1 1.3250 5.9486 -4.5015 40 1 -1.1098 6.1123 -5.1317 41 1 -0.8013 6.5319 -3.4283 42 1 -5.3242 4.9766 -5.3050 43 1 -4.8775 5.4879 -6.9501 44 1 -4.5780 3.8130 -6.4264 45 1 -2.2183 7.0657 -4.9741 46 1 -3.6895 7.3338 -5.9396 47 1 -3.8212 6.8129 -4.2427 48 1 -2.3206 4.1128 -7.1969 49 1 -2.3388 5.8702 -7.4788 50 1 -1.1815 5.1660 -6.3245 51 1 -2.0906 3.0743 -2.4073 52 1 -1.4392 4.5492 -1.6504 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183814871.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:45 Heat of formation + Delta-G solvation = -82.429499 kcal Electronic energy + Delta-G solvation = -29452.402705 eV Core-core repulsion = 25644.548227 eV Total energy + Delta-G solvation = -3807.854478 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.96680 -39.28623 -37.20781 -36.09749 -35.02478 -33.12113 -32.20756 -31.38268 -30.58023 -27.73495 -27.59297 -26.98716 -25.92102 -24.23967 -22.85753 -22.44477 -21.05180 -19.85737 -19.23657 -18.87283 -17.25744 -16.67278 -16.25316 -15.73197 -15.56614 -15.23553 -14.99704 -14.60597 -14.45783 -14.16194 -14.07126 -13.83086 -13.51291 -13.25499 -12.84894 -12.70267 -12.58219 -12.55350 -12.49406 -12.18716 -11.98895 -11.86882 -11.56445 -11.47531 -11.35419 -11.26559 -11.24015 -11.07882 -10.94628 -10.84781 -10.62058 -10.55234 -10.31124 -10.15960 -9.65869 -9.60836 -9.05987 -8.97489 -8.64491 -8.49151 -7.80679 -6.12693 -4.22229 2.55105 2.84825 3.23131 3.30019 3.31452 3.39084 4.10143 4.13934 4.36313 4.43636 4.53012 4.60704 4.71534 4.78047 4.92646 4.95411 5.15387 5.18178 5.19055 5.21932 5.27230 5.34364 5.41917 5.50109 5.55463 5.61097 5.63629 5.65672 5.72060 5.78990 5.88180 5.90763 5.95306 6.03235 6.16112 6.23153 6.42335 6.44590 6.48936 6.69254 7.06675 7.21996 7.32815 7.38880 7.47219 7.62201 7.73853 7.90604 8.11055 8.19022 8.67595 8.77525 9.14489 9.45283 10.92532 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.024344 B = 0.002838 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.900557 B = 9862.674564 C =10575.821633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.128 4.128 3 C 0.271 3.729 4 H 0.049 0.951 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.706 5.706 14 C 0.508 3.492 15 O -0.547 6.547 16 C -0.123 4.123 17 H 0.092 0.908 18 C -0.111 4.111 19 C -0.135 4.135 20 C 0.083 3.917 21 N -0.609 5.609 22 C 0.523 3.477 23 O -0.537 6.537 24 C -0.086 4.086 25 C -0.126 4.126 26 C -0.157 4.157 27 C -0.153 4.153 28 C 0.133 3.867 29 H 0.049 0.951 30 H 0.038 0.962 31 H 0.022 0.978 32 H 0.030 0.970 33 H 0.099 0.901 34 H 0.264 0.736 35 H 0.387 0.613 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.108 0.892 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.066 0.934 47 H 0.061 0.939 48 H 0.063 0.937 49 H 0.069 0.931 50 H 0.071 0.929 51 H 0.097 0.903 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.113 13.339 -18.277 24.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.167 4.167 3 C 0.169 3.831 4 H 0.067 0.933 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.353 5.353 14 C 0.292 3.708 15 O -0.426 6.426 16 C -0.145 4.145 17 H 0.110 0.890 18 C -0.149 4.149 19 C -0.173 4.173 20 C -0.039 4.039 21 N -0.342 5.342 22 C 0.310 3.690 23 O -0.414 6.414 24 C -0.089 4.089 25 C -0.184 4.184 26 C -0.214 4.214 27 C -0.210 4.210 28 C 0.011 3.989 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.117 0.883 34 H 0.074 0.926 35 H 0.219 0.781 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.098 0.902 40 H 0.125 0.875 41 H 0.088 0.912 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.085 0.915 47 H 0.080 0.920 48 H 0.082 0.918 49 H 0.088 0.912 50 H 0.090 0.910 51 H 0.116 0.884 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -9.017 12.680 -17.222 23.210 hybrid contribution 1.466 -0.103 -0.176 1.480 sum -7.551 12.578 -17.398 22.757 Atomic orbital electron populations 1.21834 0.98295 0.98064 1.01231 1.21935 0.92638 0.99860 1.02223 1.18774 0.94117 0.89170 0.81046 0.93342 1.21224 0.90737 1.38884 1.06366 0.92169 1.24888 0.98543 0.94819 0.95442 1.69894 1.35105 1.37491 1.09404 0.86472 0.84951 0.77639 0.78163 1.20595 1.21079 1.19883 1.46483 1.14570 1.55830 1.18449 1.20084 0.82853 0.79317 0.88511 1.90682 1.51350 1.60058 1.40526 1.21673 0.96493 0.98387 0.97973 0.88961 1.21508 0.98845 0.97128 0.97421 1.21967 0.96076 1.00957 0.98327 1.22455 0.89614 0.90004 1.01858 1.48074 1.22998 1.35871 1.27215 1.20593 0.80189 0.84859 0.83310 1.90704 1.52200 1.29483 1.68971 1.20777 0.98178 0.95826 0.94160 1.21663 0.93905 1.01940 1.00887 1.22288 1.03447 0.93505 1.02153 1.22138 0.98475 1.03060 0.97373 1.21353 0.95083 0.96910 0.85590 0.93153 0.94308 0.95877 0.95120 0.88315 0.92563 0.78082 0.91018 0.90651 0.91274 0.90226 0.87463 0.91160 0.92093 0.92096 0.91754 0.90636 0.91464 0.92019 0.91770 0.91248 0.91024 0.88429 0.90446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.51 37.16 0.32 -2.82 16 2 C -0.13 -3.13 5.45 -26.73 -0.15 -3.28 16 3 C 0.27 6.73 2.24 -69.08 -0.16 6.57 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.53 -13.88 8.73 -34.44 -0.30 -14.18 16 6 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.63 11.28 55.43 0.63 -24.00 16 9 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 13 N -0.71 -14.20 4.91 -54.93 -0.27 -14.47 16 14 C 0.51 9.74 5.73 -10.99 -0.06 9.68 16 15 O -0.55 -12.53 13.06 5.56 0.07 -12.46 16 16 C -0.12 -1.75 2.68 -91.65 -0.25 -2.00 16 17 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 18 C -0.11 -1.24 5.08 -26.69 -0.14 -1.38 16 19 C -0.14 -1.09 5.92 -26.61 -0.16 -1.24 16 20 C 0.08 0.67 3.99 -3.71 -0.01 0.66 16 21 N -0.61 -7.14 2.96 -172.77 -0.51 -7.65 16 22 C 0.52 6.70 6.45 -10.99 -0.07 6.63 16 23 O -0.54 -9.22 15.40 5.55 0.09 -9.14 16 24 C -0.09 -0.75 0.75 -155.66 -0.12 -0.87 16 25 C -0.13 -1.12 7.75 37.16 0.29 -0.83 16 26 C -0.16 -1.05 7.97 37.16 0.30 -0.75 16 27 C -0.15 -1.04 8.10 37.16 0.30 -0.74 16 28 C 0.13 1.96 5.08 -3.71 -0.02 1.94 16 29 H 0.05 1.22 7.85 -51.93 -0.41 0.82 16 30 H 0.04 0.87 5.64 -51.93 -0.29 0.57 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.10 2.68 5.94 -51.93 -0.31 2.37 16 34 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.39 6.78 7.94 -40.82 -0.32 6.46 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.83 7.53 -51.92 -0.39 0.44 16 38 H 0.07 0.55 8.00 -51.93 -0.42 0.14 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.11 0.65 2.56 -51.93 -0.13 0.51 16 41 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.06 0.65 8.02 -51.93 -0.42 0.23 16 45 H 0.08 0.41 4.71 -51.93 -0.24 0.17 16 46 H 0.07 0.34 8.11 -51.93 -0.42 -0.08 16 47 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 48 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 49 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 50 H 0.07 0.45 4.96 -51.93 -0.26 0.19 16 51 H 0.10 1.71 7.00 -51.93 -0.36 1.35 16 52 H 0.08 1.19 7.95 -51.93 -0.41 0.78 16 LS Contribution 387.40 15.07 5.84 5.84 Total: -1.00 -31.92 387.40 -8.46 -40.38 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: -8.96 Total: 7.04 kcal Atomic # 6 Polarization: -0.63 SS G_CDS: -0.32 Total: -0.94 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.16 Total: -46.13 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: 0.16 Total: -21.60 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.92 -8.46 -40.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183814871.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.047 kcal (2) G-P(sol) polarization free energy of solvation -31.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds