Wall clock time and date at job start Tue Mar 31 2020 15:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47284 * 2 1 4 4 H 1.09000 * 109.47304 * 54.99611 * 3 2 1 5 5 C 1.50697 * 109.47627 * 174.99972 * 3 2 1 6 6 H 1.07999 * 120.00204 * 119.99540 * 5 3 2 7 7 C 1.37884 * 119.99776 * 300.27691 * 5 3 2 8 8 N 1.31507 * 119.99873 * 359.71689 * 7 5 3 9 9 Si 1.86797 * 119.99898 * 179.72385 * 7 5 3 10 10 H 1.48498 * 109.47321 * 89.99285 * 9 7 5 11 11 H 1.48502 * 109.47002 * 209.99705 * 9 7 5 12 12 H 1.48507 * 109.47008 * 329.99497 * 9 7 5 13 13 N 1.46504 * 109.46760 * 295.00090 * 3 2 1 14 14 C 1.34774 * 120.00561 * 84.99982 * 13 3 2 15 15 O 1.21279 * 119.99284 * 359.97438 * 14 13 3 16 16 C 1.50697 * 120.00514 * 180.02562 * 14 13 3 17 17 H 1.08999 * 109.49832 * 59.99445 * 16 14 13 18 18 C 1.53046 * 109.49457 * 299.93179 * 16 14 13 19 19 C 1.53034 * 109.53913 * 178.71383 * 18 16 14 20 20 C 1.53197 * 109.33796 * 61.31456 * 19 18 16 21 21 N 1.46923 * 108.77759 * 305.38391 * 20 19 18 22 22 C 1.34775 * 120.62863 * 233.62455 * 21 20 19 23 23 O 1.21285 * 119.99971 * 174.17425 * 22 21 20 24 24 C 1.50700 * 119.99991 * 354.17896 * 22 21 20 25 25 C 1.53004 * 109.46817 * 187.70059 * 24 22 21 26 26 C 1.52999 * 109.47145 * 307.69643 * 24 22 21 27 27 C 1.53000 * 109.47228 * 67.69951 * 24 22 21 28 28 C 1.46923 * 118.73811 * 53.60777 * 21 20 19 29 29 H 1.08997 * 109.47090 * 299.99956 * 1 2 3 30 30 H 1.08997 * 109.46983 * 60.00410 * 1 2 3 31 31 H 1.09006 * 109.47154 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47484 * 239.99693 * 2 1 3 33 33 H 1.09005 * 109.47267 * 119.99737 * 2 1 3 34 34 H 0.97005 * 119.99840 * 180.02562 * 8 7 5 35 35 H 0.97003 * 119.99795 * 264.99814 * 13 3 2 36 36 H 1.08998 * 109.46288 * 298.70565 * 18 16 14 37 37 H 1.09007 * 109.45738 * 58.66470 * 18 16 14 38 38 H 1.09000 * 109.47067 * 301.37041 * 19 18 16 39 39 H 1.09000 * 109.50150 * 181.28428 * 19 18 16 40 40 H 1.08998 * 109.58347 * 185.59055 * 20 19 18 41 41 H 1.09000 * 109.69755 * 65.24065 * 20 19 18 42 42 H 1.08995 * 109.47291 * 60.00110 * 25 24 22 43 43 H 1.09000 * 109.46910 * 179.97438 * 25 24 22 44 44 H 1.09005 * 109.47106 * 299.99350 * 25 24 22 45 45 H 1.09002 * 109.46793 * 70.29737 * 26 24 22 46 46 H 1.08996 * 109.47078 * 190.30009 * 26 24 22 47 47 H 1.08999 * 109.47091 * 310.30121 * 26 24 22 48 48 H 1.08998 * 109.47071 * 72.25765 * 27 24 22 49 49 H 1.08997 * 109.46822 * 192.25836 * 27 24 22 50 50 H 1.08991 * 109.47287 * 312.25684 * 27 24 22 51 51 H 1.09001 * 109.58642 * 186.60596 * 28 21 20 52 52 H 1.08998 * 109.70824 * 66.24896 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1435 0.8734 1.2253 8 7 3.4064 0.3321 2.1704 9 14 6.0054 0.8688 1.3751 10 1 6.4483 2.0984 2.0802 11 1 6.4372 -0.3258 2.1444 12 1 6.6110 0.8302 0.0197 13 7 1.6524 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3671 15 8 -0.3395 2.6319 -0.4346 16 6 0.0362 3.3375 -2.6550 17 1 0.0671 2.6131 -3.4689 18 6 1.0057 4.4834 -2.9539 19 6 0.6206 5.1473 -4.2779 20 6 -0.7930 5.7265 -4.1627 21 7 -1.7077 4.6597 -3.7342 22 6 -2.8226 4.3863 -4.4405 23 8 -3.5140 3.4366 -4.1387 24 6 -3.2099 5.2604 -5.6054 25 6 -4.5971 4.8553 -6.1079 26 6 -3.2367 6.7234 -5.1583 27 6 -2.1893 5.0901 -6.7324 28 6 -1.3839 3.8963 -2.5214 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 3.8297 -0.0692 2.9455 35 1 2.2719 2.1230 -1.9978 36 1 0.9566 5.2193 -2.1514 37 1 2.0203 4.0914 -3.0253 38 1 0.6461 4.4063 -5.0769 39 1 1.3250 5.9486 -4.5015 40 1 -1.1098 6.1123 -5.1317 41 1 -0.8013 6.5319 -3.4283 42 1 -5.3242 4.9766 -5.3050 43 1 -4.8775 5.4879 -6.9501 44 1 -4.5780 3.8130 -6.4264 45 1 -2.2183 7.0657 -4.9741 46 1 -3.6895 7.3338 -5.9396 47 1 -3.8212 6.8129 -4.2427 48 1 -2.3206 4.1128 -7.1969 49 1 -2.3388 5.8702 -7.4788 50 1 -1.1815 5.1660 -6.3245 51 1 -2.0906 3.0743 -2.4073 52 1 -1.4392 4.5492 -1.6504 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183814871.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:44 Heat of formation + Delta-G solvation = -103.114127 kcal Electronic energy + Delta-G solvation = -29453.299657 eV Core-core repulsion = 25644.548227 eV Total energy + Delta-G solvation = -3808.751431 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.95174 -40.78058 -38.34283 -37.05516 -36.75578 -34.49147 -33.86701 -32.70933 -32.04674 -29.03717 -28.22865 -28.16737 -26.89327 -25.60077 -24.59322 -23.30534 -22.30048 -21.43331 -20.85845 -19.77278 -18.86929 -17.81552 -17.38219 -17.18934 -16.97234 -16.53151 -16.34729 -15.94988 -15.54674 -15.26822 -15.09198 -14.93077 -14.68460 -14.58205 -14.36117 -13.79360 -13.70114 -13.60316 -13.36994 -13.22825 -13.17684 -13.05920 -12.92920 -12.84983 -12.69958 -12.62279 -12.39497 -12.25233 -12.14952 -12.06038 -11.98663 -11.89650 -11.65237 -11.59665 -11.25355 -11.06577 -10.69636 -10.55764 -10.43872 -9.71344 -9.61472 -8.15799 -6.33344 1.44994 1.45362 1.55969 1.58166 1.82977 1.86533 2.37669 2.70489 3.13800 3.36421 3.63218 3.78115 3.80555 3.87819 3.94500 4.05802 4.16731 4.20858 4.30408 4.45133 4.47748 4.52865 4.63297 4.67640 4.71476 4.73331 4.74217 4.78342 4.81912 4.90499 4.94241 4.98162 5.03737 5.04839 5.10003 5.13667 5.22903 5.26260 5.32338 5.34896 5.40937 5.42355 5.49972 5.54877 5.63069 5.77629 5.92008 6.15986 6.40750 6.75033 6.98191 7.13436 7.33837 7.58562 8.89643 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.024344 B = 0.002838 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.900557 B = 9862.674564 C =10575.821633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.121 4.121 3 C 0.279 3.721 4 H -0.003 1.003 5 C -0.545 4.545 6 H 0.074 0.926 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.970 3.030 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.259 1.259 13 N -0.701 5.701 14 C 0.504 3.496 15 O -0.590 6.590 16 C -0.106 4.106 17 H 0.103 0.897 18 C -0.109 4.109 19 C -0.127 4.127 20 C 0.075 3.925 21 N -0.604 5.604 22 C 0.512 3.488 23 O -0.594 6.594 24 C -0.081 4.081 25 C -0.127 4.127 26 C -0.154 4.154 27 C -0.151 4.151 28 C 0.140 3.860 29 H 0.025 0.975 30 H 0.039 0.961 31 H 0.043 0.957 32 H 0.040 0.960 33 H 0.072 0.928 34 H 0.264 0.736 35 H 0.403 0.597 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.114 0.886 40 H 0.137 0.863 41 H 0.082 0.918 42 H 0.041 0.959 43 H 0.091 0.909 44 H 0.044 0.956 45 H 0.093 0.907 46 H 0.092 0.908 47 H 0.044 0.956 48 H 0.052 0.948 49 H 0.099 0.901 50 H 0.080 0.920 51 H 0.059 0.941 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.204 15.708 -21.741 27.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.160 4.160 3 C 0.176 3.824 4 H 0.015 0.985 5 C -0.583 4.583 6 H 0.092 0.908 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.795 3.205 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.183 1.183 13 N -0.349 5.349 14 C 0.291 3.709 15 O -0.471 6.471 16 C -0.129 4.129 17 H 0.121 0.879 18 C -0.147 4.147 19 C -0.164 4.164 20 C -0.045 4.045 21 N -0.335 5.335 22 C 0.302 3.698 23 O -0.474 6.474 24 C -0.084 4.084 25 C -0.184 4.184 26 C -0.211 4.211 27 C -0.208 4.208 28 C 0.016 3.984 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.238 0.762 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.132 0.868 40 H 0.154 0.846 41 H 0.100 0.900 42 H 0.061 0.939 43 H 0.110 0.890 44 H 0.063 0.937 45 H 0.111 0.889 46 H 0.111 0.889 47 H 0.063 0.937 48 H 0.071 0.929 49 H 0.118 0.882 50 H 0.099 0.901 51 H 0.078 0.922 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.077 15.095 -20.743 26.612 hybrid contribution 0.791 -0.835 0.949 1.491 sum -6.287 14.260 -19.794 25.193 Atomic orbital electron populations 1.21672 0.97319 0.98972 1.00062 1.21797 0.93388 0.99565 1.01274 1.18342 0.93723 0.88904 0.81466 0.98480 1.21569 0.91268 1.38688 1.06792 0.90794 1.25795 1.03354 0.94392 0.95074 1.70056 1.37117 1.38355 1.09986 0.85369 0.79083 0.77362 0.78664 1.20350 1.21221 1.18261 1.46221 1.15454 1.55764 1.17472 1.20955 0.81793 0.78418 0.89772 1.90667 1.52435 1.61351 1.42659 1.21566 0.96916 0.99475 0.94900 0.87934 1.21558 0.98088 0.95696 0.99366 1.21980 0.96391 1.01928 0.96148 1.22846 0.88989 0.89043 1.03629 1.48157 1.23490 1.36073 1.25819 1.21562 0.79565 0.84625 0.84040 1.90677 1.53916 1.32116 1.70683 1.20854 0.98520 0.96108 0.92944 1.21684 0.93892 1.01517 1.01318 1.22313 1.04549 0.91992 1.02248 1.22167 0.97976 1.03646 0.96987 1.21001 0.94501 0.95969 0.86951 0.95589 0.94158 0.93801 0.94122 0.90957 0.92664 0.76209 0.91728 0.89942 0.90493 0.86768 0.84557 0.90004 0.93938 0.88975 0.93673 0.88893 0.88913 0.93697 0.92874 0.88202 0.90101 0.92222 0.91730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.84 8.51 71.98 0.61 -5.23 16 2 C -0.12 -6.12 5.45 30.59 0.17 -5.95 16 3 C 0.28 14.32 2.24 44.24 0.10 14.42 16 4 H 0.00 -0.16 7.58 -2.39 -0.02 -0.18 16 5 C -0.55 -28.45 8.73 25.60 0.22 -28.23 16 6 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 7 C 0.01 0.74 5.29 84.66 0.45 1.19 16 8 N -0.92 -52.68 11.28 21.45 0.24 -52.44 16 9 Si 0.97 41.64 29.54 68.60 2.03 43.66 16 10 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 12 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 13 N -0.70 -28.48 4.91 -446.11 -2.19 -30.67 16 14 C 0.50 19.88 5.73 87.66 0.50 20.38 16 15 O -0.59 -28.64 13.06 -3.02 -0.04 -28.68 16 16 C -0.11 -3.01 2.68 -11.46 -0.03 -3.04 16 17 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 18 C -0.11 -2.20 5.08 30.62 0.16 -2.04 16 19 C -0.13 -1.50 5.92 30.67 0.18 -1.32 16 20 C 0.08 0.96 3.99 86.36 0.34 1.30 16 21 N -0.60 -13.68 2.96 -818.91 -2.42 -16.10 16 22 C 0.51 13.10 6.45 87.66 0.57 13.66 16 23 O -0.59 -21.58 15.40 -3.05 -0.05 -21.63 16 24 C -0.08 -1.25 0.75 -52.93 -0.04 -1.29 16 25 C -0.13 -2.13 7.75 71.98 0.56 -1.57 16 26 C -0.15 -1.55 7.97 71.98 0.57 -0.97 16 27 C -0.15 -1.48 8.10 71.98 0.58 -0.89 16 28 C 0.14 4.27 5.08 86.36 0.44 4.71 16 29 H 0.02 1.32 7.85 -2.39 -0.02 1.30 16 30 H 0.04 1.87 5.64 -2.39 -0.01 1.85 16 31 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 32 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.07 4.07 5.94 -2.38 -0.01 4.06 16 34 H 0.26 14.42 8.31 -92.70 -0.77 13.65 16 35 H 0.40 13.72 7.94 -92.71 -0.74 12.99 16 36 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.08 1.58 7.53 -2.38 -0.02 1.56 16 38 H 0.08 0.87 8.00 -2.39 -0.02 0.85 16 39 H 0.11 0.71 8.14 -2.39 -0.02 0.70 16 40 H 0.14 0.97 2.56 -2.39 -0.01 0.97 16 41 H 0.08 0.93 8.12 -2.39 -0.02 0.91 16 42 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.04 0.92 8.02 -2.38 -0.02 0.90 16 45 H 0.09 0.59 4.71 -2.39 -0.01 0.58 16 46 H 0.09 0.52 8.11 -2.39 -0.02 0.50 16 47 H 0.04 0.62 8.10 -2.39 -0.02 0.60 16 48 H 0.05 0.67 8.09 -2.39 -0.02 0.65 16 49 H 0.10 0.43 8.09 -2.39 -0.02 0.41 16 50 H 0.08 0.64 4.96 -2.39 -0.01 0.63 16 51 H 0.06 2.27 7.00 -2.39 -0.02 2.26 16 52 H 0.06 2.11 7.95 -2.39 -0.02 2.09 16 Total: -1.00 -75.76 387.40 3.12 -72.64 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: 0.17 Total: 28.10 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 5.38 Total: 5.12 kcal Atomic # 7 Polarization: -94.85 SS G_CDS: -4.37 Total: -99.22 kcal Atomic # 8 Polarization: -50.22 SS G_CDS: -0.09 Total: -50.31 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.66 kcal Total: -75.76 3.12 -72.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183814871.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.477 kcal (2) G-P(sol) polarization free energy of solvation -75.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds