Wall clock time and date at job start Tue Mar 31 2020 15:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47434 * 2 1 4 4 H 1.08999 * 109.47107 * 305.00416 * 3 2 1 5 5 C 1.50700 * 109.47064 * 184.99722 * 3 2 1 6 6 H 1.08000 * 119.99840 * 239.99925 * 5 3 2 7 7 C 1.37868 * 119.99998 * 60.00925 * 5 3 2 8 8 N 1.31522 * 120.00244 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00365 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47424 * 89.98976 * 9 7 5 11 11 H 1.48507 * 109.47089 * 209.99542 * 9 7 5 12 12 H 1.48503 * 109.46509 * 329.99396 * 9 7 5 13 13 N 1.46505 * 109.46672 * 64.99988 * 3 2 1 14 14 C 1.34774 * 120.00118 * 274.99912 * 13 3 2 15 15 O 1.21280 * 120.00227 * 0.02562 * 14 13 3 16 16 C 1.50701 * 120.00364 * 180.02562 * 14 13 3 17 17 H 1.09005 * 109.46879 * 59.99644 * 16 14 13 18 18 C 1.53004 * 109.46802 * 300.00488 * 16 14 13 19 19 C 1.53003 * 109.46860 * 177.09321 * 18 16 14 20 20 C 1.53002 * 109.47387 * 294.26248 * 19 18 16 21 21 C 1.52996 * 109.47050 * 174.26077 * 19 18 16 22 22 N 1.46492 * 109.47636 * 180.02562 * 16 14 13 23 23 C 1.45758 * 117.94601 * 239.69339 * 22 16 14 24 24 C 1.53102 * 110.38511 * 160.74085 * 23 22 16 25 25 C 1.53352 * 108.52959 * 51.11362 * 24 23 22 26 26 C 1.53069 * 108.42152 * 292.30824 * 25 24 23 27 27 C 1.33350 * 117.94755 * 59.94683 * 22 16 14 28 28 O 1.21285 * 118.24234 * 2.20959 * 27 22 16 29 29 H 1.08997 * 109.47368 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46958 * 300.00256 * 1 2 3 31 31 H 1.09003 * 109.46896 * 59.99568 * 1 2 3 32 32 H 1.08995 * 109.47295 * 240.00152 * 2 1 3 33 33 H 1.09003 * 109.46896 * 120.00432 * 2 1 3 34 34 H 0.96997 * 120.00213 * 180.02562 * 8 7 5 35 35 H 0.97001 * 119.99708 * 95.00607 * 13 3 2 36 36 H 1.08998 * 109.47520 * 57.09134 * 18 16 14 37 37 H 1.09002 * 109.46704 * 297.08751 * 18 16 14 38 38 H 1.09003 * 109.47041 * 54.26609 * 19 18 16 39 39 H 1.08997 * 109.46741 * 300.00524 * 20 19 18 40 40 H 1.08998 * 109.46735 * 59.99620 * 20 19 18 41 41 H 1.08988 * 109.47222 * 180.02562 * 20 19 18 42 42 H 1.08999 * 109.47246 * 295.05388 * 21 19 18 43 43 H 1.08999 * 109.47154 * 55.05401 * 21 19 18 44 44 H 1.08994 * 109.47279 * 175.05182 * 21 19 18 45 45 H 1.08998 * 109.29708 * 281.23258 * 23 22 16 46 46 H 1.09000 * 109.30073 * 40.60752 * 23 22 16 47 47 H 1.08998 * 109.80748 * 291.32421 * 24 23 22 48 48 H 1.08994 * 109.54338 * 170.74206 * 24 23 22 49 49 H 1.09001 * 109.67377 * 172.57388 * 25 24 23 50 50 H 1.09004 * 109.67102 * 52.04053 * 25 24 23 51 51 H 1.08998 * 109.40196 * 288.76868 * 26 25 24 52 52 H 1.09004 * 109.32821 * 168.98296 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8887 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4063 0.3367 -2.1730 9 14 6.0050 0.8811 -1.3817 10 1 6.5549 -0.3503 -0.7601 11 1 6.3830 0.9223 -2.8173 12 1 6.5570 2.0737 -0.6901 13 7 1.6525 2.0974 1.2519 14 6 0.4352 2.6643 1.3671 15 8 -0.3395 2.6320 0.4345 16 6 0.0367 3.3385 2.6546 17 1 0.7282 4.1540 2.8668 18 6 0.0807 2.3221 3.7973 19 6 -0.2534 3.0225 5.1160 20 6 0.8469 4.0317 5.4505 21 6 -0.3500 1.9837 6.2350 22 7 -1.3222 3.8706 2.5270 23 6 -1.5132 5.3052 2.7003 24 6 -2.8425 5.7449 2.0810 25 6 -3.9545 4.8353 2.6172 26 6 -3.7368 3.4259 2.0613 27 6 -2.3077 3.0114 2.2648 28 8 -2.0353 1.8322 2.1861 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8293 -0.0616 -2.9496 35 1 2.2720 2.1230 1.9978 36 1 1.0786 1.8879 3.8592 37 1 -0.6478 1.5332 3.6102 38 1 -1.2065 3.5426 5.0198 39 1 1.7999 3.5116 5.5466 40 1 0.9157 4.7717 4.6533 41 1 0.6091 4.5303 6.3901 42 1 -1.1903 1.3172 6.0405 43 1 0.5722 1.4039 6.2732 44 1 -0.5007 2.4897 7.1885 45 1 -1.5110 5.5430 3.7640 46 1 -0.6968 5.8387 2.2134 47 1 -2.7908 5.6584 0.9956 48 1 -3.0498 6.7784 2.3584 49 1 -4.9248 5.2118 2.2933 50 1 -3.9150 4.8104 3.7063 51 1 -3.9682 3.4170 0.9962 52 1 -4.3936 2.7278 2.5803 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183903431.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:16 Heat of formation + Delta-G solvation = -92.020299 kcal Electronic energy + Delta-G solvation = -30582.707990 eV Core-core repulsion = 26774.437624 eV Total energy + Delta-G solvation = -3808.270366 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.86518 -38.44918 -36.60467 -36.21527 -34.92189 -33.50201 -32.30061 -30.91851 -29.75300 -28.99596 -27.24128 -26.74331 -24.66297 -24.18408 -22.96722 -22.29082 -20.20739 -19.97503 -19.16414 -18.31184 -17.26723 -16.84734 -15.99384 -15.84836 -15.25892 -14.98282 -14.79830 -14.41298 -14.29583 -14.10476 -13.82003 -13.74692 -13.52882 -13.24585 -13.11728 -12.56989 -12.43943 -12.35760 -12.14876 -11.88138 -11.65443 -11.58005 -11.36094 -11.24701 -11.14297 -11.10338 -11.06057 -10.92519 -10.79452 -10.66835 -10.62879 -10.58482 -10.23451 -9.97445 -9.45043 -9.13817 -9.05870 -8.91723 -8.43114 -8.23839 -7.65676 -6.05514 -4.14974 2.95972 3.16562 3.27234 3.33942 3.35867 3.55711 4.21716 4.44236 4.58668 4.62062 4.65988 4.75238 4.88137 4.93134 4.98179 5.18506 5.25207 5.27155 5.36085 5.38138 5.51387 5.58018 5.58884 5.61018 5.71204 5.74813 5.75306 5.79431 5.80876 5.85298 5.93180 6.05385 6.08590 6.20702 6.31754 6.46598 6.59724 6.68874 6.71775 6.90712 7.27378 7.39776 7.55173 7.63524 7.72010 7.73894 7.86873 8.00889 8.29501 8.57583 8.80006 8.87749 9.29919 9.53096 10.99504 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.014647 B = 0.004004 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.227980 B = 6990.551832 C = 7666.964814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.125 4.125 3 C 0.275 3.725 4 H 0.045 0.955 5 C -0.532 4.532 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.274 1.274 13 N -0.709 5.709 14 C 0.500 3.500 15 O -0.531 6.531 16 C 0.126 3.874 17 H 0.102 0.898 18 C -0.130 4.130 19 C -0.091 4.091 20 C -0.150 4.150 21 C -0.145 4.145 22 N -0.586 5.586 23 C 0.116 3.884 24 C -0.135 4.135 25 C -0.121 4.121 26 C -0.133 4.133 27 C 0.525 3.475 28 O -0.527 6.527 29 H 0.016 0.984 30 H 0.058 0.942 31 H 0.042 0.958 32 H 0.094 0.906 33 H 0.028 0.972 34 H 0.263 0.737 35 H 0.385 0.615 36 H 0.073 0.927 37 H 0.098 0.902 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.055 0.945 44 H 0.050 0.950 45 H 0.063 0.937 46 H 0.072 0.928 47 H 0.075 0.925 48 H 0.080 0.920 49 H 0.072 0.928 50 H 0.067 0.933 51 H 0.097 0.903 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.018 11.069 15.335 21.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.164 4.164 3 C 0.173 3.827 4 H 0.063 0.937 5 C -0.571 4.571 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.358 5.358 14 C 0.283 3.717 15 O -0.408 6.408 16 C 0.018 3.982 17 H 0.119 0.881 18 C -0.168 4.168 19 C -0.110 4.110 20 C -0.207 4.207 21 C -0.202 4.202 22 N -0.320 5.320 23 C -0.007 4.007 24 C -0.173 4.173 25 C -0.159 4.159 26 C -0.172 4.172 27 C 0.314 3.686 28 O -0.403 6.403 29 H 0.035 0.965 30 H 0.077 0.923 31 H 0.061 0.939 32 H 0.113 0.887 33 H 0.047 0.953 34 H 0.073 0.927 35 H 0.217 0.783 36 H 0.092 0.908 37 H 0.116 0.884 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.094 0.906 48 H 0.099 0.901 49 H 0.091 0.909 50 H 0.086 0.914 51 H 0.115 0.885 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -11.446 10.323 14.389 21.086 hybrid contribution 1.395 0.089 0.121 1.403 sum -10.050 10.411 14.510 20.493 Atomic orbital electron populations 1.21866 0.97806 0.97878 1.02109 1.21903 0.93010 0.99666 1.01810 1.18711 0.93830 0.89214 0.80961 0.93671 1.21249 0.90879 1.38851 1.06122 0.92224 1.24883 0.98420 0.94922 0.95453 1.69915 1.34993 1.37650 1.09358 0.86490 0.85140 0.78388 0.77306 1.20588 1.21142 1.19920 1.46405 1.14563 1.56479 1.18366 1.20351 0.82734 0.79748 0.88877 1.90645 1.50885 1.59021 1.40279 1.21120 0.84370 0.97764 0.94914 0.88067 1.22085 1.03939 0.98864 0.91929 1.21054 0.98981 0.96283 0.94650 1.21925 0.98951 0.98957 1.00879 1.21802 1.01963 0.98810 0.97637 1.46921 1.06544 1.07160 1.71377 1.21424 0.98415 0.80659 1.00194 1.21901 0.93952 0.99730 1.01740 1.21644 0.99046 0.94395 1.00805 1.21636 0.93821 0.97810 1.03980 1.19814 0.87041 0.85906 0.75883 1.90677 1.83108 1.17365 1.49164 0.96497 0.92294 0.93879 0.88735 0.95331 0.92671 0.78338 0.90832 0.88375 0.91464 0.92416 0.92775 0.93013 0.92805 0.92588 0.93066 0.91920 0.91000 0.90604 0.90109 0.90916 0.91382 0.88456 0.88798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 8.52 37.16 0.32 -3.16 16 2 C -0.12 -3.24 5.45 -26.73 -0.15 -3.39 16 3 C 0.27 7.15 2.24 -69.08 -0.15 6.99 16 4 H 0.05 1.37 7.58 -51.93 -0.39 0.97 16 5 C -0.53 -14.33 8.73 -34.44 -0.30 -14.63 16 6 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 7 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -25.34 11.29 55.43 0.63 -24.72 16 9 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 13 N -0.71 -15.16 4.90 -54.93 -0.27 -15.43 16 14 C 0.50 10.20 4.99 -10.99 -0.05 10.15 16 15 O -0.53 -12.85 11.70 -15.24 -0.18 -13.03 16 16 C 0.13 1.88 2.27 -69.08 -0.16 1.73 16 17 H 0.10 1.28 6.11 -51.93 -0.32 0.97 16 18 C -0.13 -1.80 3.89 -26.73 -0.10 -1.91 16 19 C -0.09 -0.97 2.85 -90.62 -0.26 -1.23 16 20 C -0.15 -1.35 8.97 37.16 0.33 -1.02 16 21 C -0.14 -1.46 9.19 37.16 0.34 -1.12 16 22 N -0.59 -8.01 1.87 -168.58 -0.32 -8.32 16 23 C 0.12 1.12 6.26 -4.39 -0.03 1.10 16 24 C -0.14 -1.12 6.03 -26.50 -0.16 -1.28 16 25 C -0.12 -0.98 6.03 -26.51 -0.16 -1.14 16 26 C -0.13 -1.53 6.03 -28.10 -0.17 -1.70 16 27 C 0.53 8.22 6.12 -11.87 -0.07 8.15 16 28 O -0.53 -10.52 11.92 -15.25 -0.18 -10.70 16 29 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 1.48 4.70 -51.93 -0.24 1.23 16 31 H 0.04 1.14 7.85 -51.93 -0.41 0.73 16 32 H 0.09 2.69 5.95 -51.93 -0.31 2.38 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 35 H 0.38 7.20 7.92 -40.82 -0.32 6.87 16 36 H 0.07 1.01 7.48 -51.93 -0.39 0.62 16 37 H 0.10 1.68 5.77 -51.93 -0.30 1.38 16 38 H 0.07 0.73 7.46 -51.93 -0.39 0.34 16 39 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.05 0.47 6.53 -51.93 -0.34 0.13 16 41 H 0.05 0.41 8.14 -51.94 -0.42 -0.01 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.06 0.48 8.07 -51.93 -0.42 0.06 16 46 H 0.07 0.68 8.03 -51.93 -0.42 0.27 16 47 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16 48 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 49 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.07 0.50 8.12 -51.93 -0.42 0.08 16 51 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 52 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 390.70 15.07 5.89 5.89 Total: -1.00 -33.28 390.70 -9.60 -42.88 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -9.28 Total: 8.28 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -0.87 Total: -0.75 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 0.04 Total: -48.47 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.36 Total: -23.73 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.28 -9.60 -42.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183903431.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.141 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds