Wall clock time and date at job start Tue Mar 31 2020 15:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47434 * 2 1 4 4 H 1.08999 * 109.47107 * 305.00416 * 3 2 1 5 5 C 1.50700 * 109.47064 * 184.99722 * 3 2 1 6 6 H 1.08000 * 119.99840 * 239.99925 * 5 3 2 7 7 C 1.37868 * 119.99998 * 60.00925 * 5 3 2 8 8 N 1.31522 * 120.00244 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00365 * 179.97438 * 7 5 3 10 10 H 1.48494 * 109.47424 * 89.98976 * 9 7 5 11 11 H 1.48507 * 109.47089 * 209.99542 * 9 7 5 12 12 H 1.48503 * 109.46509 * 329.99396 * 9 7 5 13 13 N 1.46505 * 109.46672 * 64.99988 * 3 2 1 14 14 C 1.34774 * 120.00118 * 274.99912 * 13 3 2 15 15 O 1.21280 * 120.00227 * 0.02562 * 14 13 3 16 16 C 1.50701 * 120.00364 * 180.02562 * 14 13 3 17 17 H 1.09005 * 109.46879 * 59.99644 * 16 14 13 18 18 C 1.53004 * 109.46802 * 300.00488 * 16 14 13 19 19 C 1.53003 * 109.46860 * 177.09321 * 18 16 14 20 20 C 1.53002 * 109.47387 * 294.26248 * 19 18 16 21 21 C 1.52996 * 109.47050 * 174.26077 * 19 18 16 22 22 N 1.46492 * 109.47636 * 180.02562 * 16 14 13 23 23 C 1.45758 * 117.94601 * 239.69339 * 22 16 14 24 24 C 1.53102 * 110.38511 * 160.74085 * 23 22 16 25 25 C 1.53352 * 108.52959 * 51.11362 * 24 23 22 26 26 C 1.53069 * 108.42152 * 292.30824 * 25 24 23 27 27 C 1.33350 * 117.94755 * 59.94683 * 22 16 14 28 28 O 1.21285 * 118.24234 * 2.20959 * 27 22 16 29 29 H 1.08997 * 109.47368 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46958 * 300.00256 * 1 2 3 31 31 H 1.09003 * 109.46896 * 59.99568 * 1 2 3 32 32 H 1.08995 * 109.47295 * 240.00152 * 2 1 3 33 33 H 1.09003 * 109.46896 * 120.00432 * 2 1 3 34 34 H 0.96997 * 120.00213 * 180.02562 * 8 7 5 35 35 H 0.97001 * 119.99708 * 95.00607 * 13 3 2 36 36 H 1.08998 * 109.47520 * 57.09134 * 18 16 14 37 37 H 1.09002 * 109.46704 * 297.08751 * 18 16 14 38 38 H 1.09003 * 109.47041 * 54.26609 * 19 18 16 39 39 H 1.08997 * 109.46741 * 300.00524 * 20 19 18 40 40 H 1.08998 * 109.46735 * 59.99620 * 20 19 18 41 41 H 1.08988 * 109.47222 * 180.02562 * 20 19 18 42 42 H 1.08999 * 109.47246 * 295.05388 * 21 19 18 43 43 H 1.08999 * 109.47154 * 55.05401 * 21 19 18 44 44 H 1.08994 * 109.47279 * 175.05182 * 21 19 18 45 45 H 1.08998 * 109.29708 * 281.23258 * 23 22 16 46 46 H 1.09000 * 109.30073 * 40.60752 * 23 22 16 47 47 H 1.08998 * 109.80748 * 291.32421 * 24 23 22 48 48 H 1.08994 * 109.54338 * 170.74206 * 24 23 22 49 49 H 1.09001 * 109.67377 * 172.57388 * 25 24 23 50 50 H 1.09004 * 109.67102 * 52.04053 * 25 24 23 51 51 H 1.08998 * 109.40196 * 288.76868 * 26 25 24 52 52 H 1.09004 * 109.32821 * 168.98296 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5420 1.4442 -0.1238 6 1 4.1472 1.8887 0.6524 7 6 4.1433 0.8784 -1.2279 8 7 3.4063 0.3367 -2.1730 9 14 6.0050 0.8811 -1.3817 10 1 6.5549 -0.3503 -0.7601 11 1 6.3830 0.9223 -2.8173 12 1 6.5570 2.0737 -0.6901 13 7 1.6525 2.0974 1.2519 14 6 0.4352 2.6643 1.3671 15 8 -0.3395 2.6320 0.4345 16 6 0.0367 3.3385 2.6546 17 1 0.7282 4.1540 2.8668 18 6 0.0807 2.3221 3.7973 19 6 -0.2534 3.0225 5.1160 20 6 0.8469 4.0317 5.4505 21 6 -0.3500 1.9837 6.2350 22 7 -1.3222 3.8706 2.5270 23 6 -1.5132 5.3052 2.7003 24 6 -2.8425 5.7449 2.0810 25 6 -3.9545 4.8353 2.6172 26 6 -3.7368 3.4259 2.0613 27 6 -2.3077 3.0114 2.2648 28 8 -2.0353 1.8322 2.1861 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 3.8293 -0.0616 -2.9496 35 1 2.2720 2.1230 1.9978 36 1 1.0786 1.8879 3.8592 37 1 -0.6478 1.5332 3.6102 38 1 -1.2065 3.5426 5.0198 39 1 1.7999 3.5116 5.5466 40 1 0.9157 4.7717 4.6533 41 1 0.6091 4.5303 6.3901 42 1 -1.1903 1.3172 6.0405 43 1 0.5722 1.4039 6.2732 44 1 -0.5007 2.4897 7.1885 45 1 -1.5110 5.5430 3.7640 46 1 -0.6968 5.8387 2.2134 47 1 -2.7908 5.6584 0.9956 48 1 -3.0498 6.7784 2.3584 49 1 -4.9248 5.2118 2.2933 50 1 -3.9150 4.8104 3.7063 51 1 -3.9682 3.4170 0.9962 52 1 -4.3936 2.7278 2.5803 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183903431.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:37:15 Heat of formation + Delta-G solvation = -111.657289 kcal Electronic energy + Delta-G solvation = -30583.559514 eV Core-core repulsion = 26774.437624 eV Total energy + Delta-G solvation = -3809.121890 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.07969 -40.03423 -37.70999 -37.19724 -36.83338 -34.50611 -34.27080 -32.84842 -30.80673 -30.15684 -28.71367 -27.97139 -25.77906 -25.25380 -24.78680 -23.43916 -21.91743 -21.09920 -20.78670 -19.43539 -18.88129 -17.99411 -17.58621 -17.15576 -16.90348 -16.40613 -16.11070 -15.81077 -15.58272 -15.12083 -14.92868 -14.79827 -14.64474 -14.52639 -14.43563 -14.15123 -13.75684 -13.62612 -13.35003 -13.17717 -13.10351 -12.96673 -12.89642 -12.73736 -12.66103 -12.54503 -12.17036 -12.06759 -12.03253 -11.83981 -11.81482 -11.68023 -11.61280 -11.49160 -11.47053 -11.04846 -10.63045 -10.49211 -10.30993 -9.56398 -9.50913 -8.15478 -6.33773 1.43789 1.44849 1.55351 1.76967 1.96150 2.10015 2.38349 2.77441 3.13320 3.66811 3.86053 3.87806 3.91035 3.97705 3.98760 4.08377 4.15457 4.26012 4.45538 4.50234 4.57337 4.59108 4.59582 4.63225 4.75721 4.78577 4.84389 4.89107 4.91453 4.97745 5.06731 5.08214 5.09138 5.11929 5.15037 5.19904 5.26365 5.34429 5.38545 5.44537 5.48585 5.53288 5.56516 5.62649 5.66111 5.79153 5.95020 6.16580 6.64926 6.75287 7.04949 7.34111 7.42493 7.68411 8.89990 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.014647 B = 0.004004 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.227980 B = 6990.551832 C = 7666.964814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.116 4.116 3 C 0.286 3.714 4 H -0.008 1.008 5 C -0.546 4.546 6 H 0.073 0.927 7 C 0.014 3.986 8 N -0.918 5.918 9 Si 0.973 3.027 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.261 1.261 13 N -0.708 5.708 14 C 0.492 3.508 15 O -0.574 6.574 16 C 0.136 3.864 17 H 0.133 0.867 18 C -0.122 4.122 19 C -0.082 4.082 20 C -0.147 4.147 21 C -0.144 4.144 22 N -0.584 5.584 23 C 0.105 3.895 24 C -0.133 4.133 25 C -0.111 4.111 26 C -0.132 4.132 27 C 0.512 3.488 28 O -0.581 6.581 29 H 0.031 0.969 30 H 0.057 0.943 31 H 0.016 0.984 32 H 0.069 0.931 33 H 0.035 0.965 34 H 0.264 0.736 35 H 0.400 0.600 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.069 0.931 42 H 0.039 0.961 43 H 0.053 0.947 44 H 0.071 0.929 45 H 0.095 0.905 46 H 0.075 0.925 47 H 0.053 0.947 48 H 0.116 0.884 49 H 0.095 0.905 50 H 0.084 0.916 51 H 0.086 0.914 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.440 13.501 18.189 24.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.155 4.155 3 C 0.182 3.818 4 H 0.010 0.990 5 C -0.584 4.584 6 H 0.091 0.909 7 C -0.186 4.186 8 N -0.556 5.556 9 Si 0.797 3.203 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.185 1.185 13 N -0.358 5.358 14 C 0.278 3.722 15 O -0.453 6.453 16 C 0.028 3.972 17 H 0.150 0.850 18 C -0.161 4.161 19 C -0.100 4.100 20 C -0.204 4.204 21 C -0.201 4.201 22 N -0.316 5.316 23 C -0.017 4.017 24 C -0.170 4.170 25 C -0.148 4.148 26 C -0.171 4.171 27 C 0.302 3.698 28 O -0.461 6.461 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.035 0.965 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.234 0.766 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.088 0.912 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.113 0.887 46 H 0.094 0.906 47 H 0.071 0.929 48 H 0.134 0.866 49 H 0.113 0.887 50 H 0.102 0.898 51 H 0.104 0.896 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -10.870 12.814 17.295 24.114 hybrid contribution 1.152 -0.670 -0.804 1.556 sum -9.718 12.144 16.491 22.669 Atomic orbital electron populations 1.21669 0.97215 0.98286 1.00666 1.21758 0.93314 0.99729 1.00730 1.18236 0.93562 0.88624 0.81383 0.98982 1.21582 0.91265 1.38903 1.06672 0.90851 1.25823 1.03506 0.94327 0.94965 1.70080 1.37162 1.38418 1.09944 0.85341 0.78866 0.78951 0.77142 1.19786 1.21287 1.18531 1.46181 1.15631 1.56606 1.17336 1.21394 0.81541 0.78878 0.90377 1.90623 1.51839 1.60444 1.42407 1.21076 0.85911 0.98492 0.91741 0.84988 1.21998 1.02784 0.97961 0.93347 1.20984 0.99843 0.96554 0.92657 1.21906 0.97985 0.98471 1.02038 1.21792 1.01289 0.98630 0.98380 1.47090 1.05384 1.08836 1.70258 1.21824 0.99497 0.77907 1.02440 1.21930 0.93184 1.01655 1.00263 1.21639 1.00092 0.91585 1.01532 1.21664 0.91188 1.00664 1.03614 1.20604 0.88817 0.85470 0.74929 1.90652 1.84196 1.19733 1.51530 0.95014 0.92442 0.96511 0.91284 0.94622 0.92697 0.76597 0.90993 0.91856 0.91201 0.92524 0.92135 0.91163 0.94206 0.92833 0.90996 0.88657 0.90645 0.92863 0.86623 0.88694 0.89775 0.89612 0.88235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.37 8.52 71.98 0.61 -5.75 16 2 C -0.12 -6.30 5.45 30.59 0.17 -6.13 16 3 C 0.29 15.49 2.24 44.24 0.10 15.59 16 4 H -0.01 -0.50 7.58 -2.39 -0.02 -0.51 16 5 C -0.55 -29.75 8.73 25.60 0.22 -29.53 16 6 H 0.07 3.70 7.74 -2.91 -0.02 3.68 16 7 C 0.01 0.75 5.29 84.65 0.45 1.20 16 8 N -0.92 -54.44 11.29 21.45 0.24 -54.20 16 9 Si 0.97 42.89 29.54 68.60 2.03 44.91 16 10 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 12 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 13 N -0.71 -31.00 4.90 -446.09 -2.18 -33.19 16 14 C 0.49 20.70 4.99 87.66 0.44 21.13 16 15 O -0.57 -29.25 11.70 16.86 0.20 -29.05 16 16 C 0.14 3.97 2.27 44.25 0.10 4.07 16 17 H 0.13 3.04 6.11 -2.38 -0.01 3.02 16 18 C -0.12 -3.34 3.89 30.60 0.12 -3.22 16 19 C -0.08 -1.56 2.85 -10.79 -0.03 -1.60 16 20 C -0.15 -2.12 8.97 71.98 0.65 -1.47 16 21 C -0.14 -2.64 9.19 71.98 0.66 -1.98 16 22 N -0.58 -15.41 1.87 -806.45 -1.51 -16.92 16 23 C 0.10 1.72 6.26 86.55 0.54 2.26 16 24 C -0.13 -1.81 6.03 30.75 0.19 -1.63 16 25 C -0.11 -1.48 6.03 30.74 0.19 -1.30 16 26 C -0.13 -3.01 6.03 29.71 0.18 -2.83 16 27 C 0.51 16.27 6.12 87.71 0.54 16.81 16 28 O -0.58 -24.37 11.92 16.84 0.20 -24.17 16 29 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 3.04 4.70 -2.39 -0.01 3.03 16 31 H 0.02 0.91 7.85 -2.39 -0.02 0.89 16 32 H 0.07 4.12 5.95 -2.39 -0.01 4.10 16 33 H 0.03 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.26 14.82 8.31 -92.71 -0.77 14.05 16 35 H 0.40 14.92 7.92 -92.71 -0.73 14.19 16 36 H 0.07 1.94 7.48 -2.39 -0.02 1.92 16 37 H 0.06 2.23 5.77 -2.39 -0.01 2.22 16 38 H 0.07 1.32 7.46 -2.39 -0.02 1.30 16 39 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.06 0.80 6.53 -2.39 -0.02 0.78 16 41 H 0.07 0.79 8.14 -2.39 -0.02 0.78 16 42 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.10 1.02 8.07 -2.39 -0.02 1.00 16 46 H 0.08 1.22 8.03 -2.39 -0.02 1.20 16 47 H 0.05 0.98 8.12 -2.39 -0.02 0.97 16 48 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 50 H 0.08 0.91 8.12 -2.39 -0.02 0.89 16 51 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 52 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -77.93 390.70 4.25 -73.69 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: 0.16 Total: 33.30 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 5.11 Total: 5.63 kcal Atomic # 7 Polarization: -100.86 SS G_CDS: -3.45 Total: -104.31 kcal Atomic # 8 Polarization: -53.62 SS G_CDS: 0.40 Total: -53.22 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.91 kcal Total: -77.93 4.25 -73.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183903431.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.972 kcal (2) G-P(sol) polarization free energy of solvation -77.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds