Wall clock time and date at job start Tue Mar 31 2020 15:36:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47103 * 2 1 4 4 H 1.08992 * 109.47354 * 304.90550 * 3 2 1 5 5 C 1.50698 * 109.47272 * 184.90136 * 3 2 1 6 6 H 1.08000 * 120.00184 * 245.45531 * 5 3 2 7 7 C 1.37874 * 119.99731 * 65.45527 * 5 3 2 8 8 N 1.31514 * 120.00161 * 9.47102 * 7 5 3 9 9 Si 1.86798 * 119.99922 * 189.46674 * 7 5 3 10 10 H 1.48498 * 109.47271 * 84.99878 * 9 7 5 11 11 H 1.48502 * 109.47336 * 204.99675 * 9 7 5 12 12 H 1.48493 * 109.47410 * 324.99545 * 9 7 5 13 13 N 1.46501 * 109.46726 * 64.90405 * 3 2 1 14 14 C 1.34776 * 120.00121 * 274.99926 * 13 3 2 15 15 O 1.21280 * 120.00009 * 0.02562 * 14 13 3 16 16 C 1.50710 * 119.99914 * 179.97438 * 14 13 3 17 17 H 1.08996 * 109.99835 * 300.36027 * 16 14 13 18 18 C 1.54323 * 109.87896 * 61.45378 * 16 14 13 19 19 C 1.55162 * 102.94029 * 97.22465 * 18 16 14 20 20 C 1.54911 * 101.58375 * 35.49910 * 19 18 16 21 21 N 1.47023 * 109.87696 * 179.26405 * 16 14 13 22 22 C 1.34771 * 125.65077 * 59.56048 * 21 16 14 23 23 O 1.21276 * 119.99998 * 359.97438 * 22 21 16 24 24 C 1.50705 * 119.99703 * 179.97438 * 22 21 16 25 25 C 1.53008 * 109.46880 * 179.97438 * 24 22 21 26 26 C 1.53005 * 109.46829 * 60.00302 * 25 24 22 27 27 C 1.52994 * 109.47033 * 180.02562 * 25 24 22 28 28 C 1.52996 * 109.47238 * 300.00360 * 25 24 22 29 29 H 1.08994 * 109.47462 * 59.99577 * 1 2 3 30 30 H 1.09006 * 109.46905 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46716 * 299.99156 * 1 2 3 32 32 H 1.08998 * 109.47416 * 240.00581 * 2 1 3 33 33 H 1.08994 * 109.47462 * 120.00423 * 2 1 3 34 34 H 0.96997 * 120.00279 * 179.97438 * 8 7 5 35 35 H 0.97007 * 119.99828 * 94.99785 * 13 3 2 36 36 H 1.08998 * 110.72691 * 338.86405 * 18 16 14 37 37 H 1.09003 * 110.86974 * 215.64997 * 18 16 14 38 38 H 1.09002 * 111.00638 * 277.42345 * 19 18 16 39 39 H 1.09000 * 111.03666 * 153.58797 * 19 18 16 40 40 H 1.08998 * 110.36761 * 81.82507 * 20 19 18 41 41 H 1.08996 * 110.36952 * 204.15146 * 20 19 18 42 42 H 1.09000 * 109.47307 * 300.00069 * 24 22 21 43 43 H 1.09003 * 109.47149 * 60.00459 * 24 22 21 44 44 H 1.09000 * 109.47276 * 59.99872 * 26 25 24 45 45 H 1.08998 * 109.46884 * 179.97438 * 26 25 24 46 46 H 1.09000 * 109.46916 * 299.99626 * 26 25 24 47 47 H 1.09006 * 109.47360 * 60.00002 * 27 25 24 48 48 H 1.08998 * 109.47321 * 180.02562 * 27 25 24 49 49 H 1.09000 * 109.47172 * 300.00189 * 27 25 24 50 50 H 1.09005 * 109.47149 * 60.00023 * 28 25 24 51 51 H 1.09004 * 109.47248 * 179.97438 * 28 25 24 52 52 H 1.08994 * 109.47112 * 299.99907 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6067 1.9811 -0.8427 5 6 3.5421 1.4443 -0.1214 6 1 4.1493 1.8090 0.6938 7 6 4.1411 0.9802 -1.2732 8 7 3.4096 0.7117 -2.3326 9 14 5.9918 0.7330 -1.3291 10 1 6.3290 -0.6065 -0.7838 11 1 6.4617 0.8278 -2.7346 12 1 6.6561 1.7810 -0.5134 13 7 1.6504 2.0981 1.2509 14 6 0.4329 2.6650 1.3638 15 8 -0.3403 2.6321 0.4301 16 6 0.0320 3.3390 2.6508 17 1 0.0649 2.6233 3.4723 18 6 0.9829 4.5185 2.9439 19 6 0.1950 5.7420 2.4056 20 6 -1.2635 5.3483 2.7487 21 7 -1.3242 3.8925 2.5239 22 6 -2.4383 3.1860 2.2485 23 8 -2.3701 1.9867 2.0817 24 6 -3.7689 3.8864 2.1477 25 6 -4.8609 2.8633 1.8282 26 6 -4.9192 1.8153 2.9415 27 6 -6.2116 3.5744 1.7253 28 6 -4.5435 2.1772 0.4980 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.8310 0.3855 -3.1431 35 1 2.2687 2.1241 1.9979 36 1 1.9234 4.3986 2.4062 37 1 1.1620 4.6161 4.0147 38 1 0.3277 5.8493 1.3290 39 1 0.4860 6.6546 2.9258 40 1 -1.4840 5.5807 3.7905 41 1 -1.9609 5.8635 2.0883 42 1 -3.9948 4.3755 3.0952 43 1 -3.7275 4.6327 1.3543 44 1 -5.1452 2.3041 3.8892 45 1 -5.6973 1.0867 2.7142 46 1 -3.9568 1.3087 3.0144 47 1 -6.1698 4.3208 0.9320 48 1 -6.9896 2.8455 1.4981 49 1 -6.4379 4.0635 2.6727 50 1 -3.5811 1.6706 0.5710 51 1 -5.3212 1.4480 0.2707 52 1 -4.5020 2.9237 -0.2950 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000183938979.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:41 Heat of formation + Delta-G solvation = -86.138210 kcal Electronic energy + Delta-G solvation = -30124.399708 eV Core-core repulsion = 26316.384408 eV Total energy + Delta-G solvation = -3808.015300 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.53141 -38.88355 -37.37193 -35.94379 -34.81697 -32.45731 -31.75380 -30.93476 -29.45702 -27.98085 -27.16997 -27.00995 -26.75271 -23.85650 -22.87968 -21.79639 -20.72628 -19.47143 -19.02860 -18.46084 -17.41110 -16.99196 -16.03069 -15.61406 -15.09045 -15.03205 -14.82878 -14.44908 -14.24398 -14.05276 -13.89050 -13.47726 -13.28256 -13.14376 -12.69106 -12.60926 -12.40899 -12.06558 -12.00840 -11.93636 -11.66437 -11.48167 -11.36285 -11.31216 -11.15551 -11.05615 -10.97946 -10.96273 -10.92012 -10.69651 -10.65516 -10.57674 -10.26822 -10.09716 -9.56029 -9.18518 -9.10414 -9.02114 -8.43466 -8.24249 -7.71579 -6.10580 -4.15877 2.88203 3.10215 3.26517 3.33367 3.34166 3.50486 4.17510 4.40930 4.46975 4.50206 4.70170 4.83429 4.84997 4.90859 5.20192 5.21450 5.22245 5.33337 5.43090 5.44253 5.53952 5.56440 5.62721 5.67750 5.72401 5.76612 5.82924 5.91347 5.92492 5.98416 6.09669 6.16435 6.23017 6.28242 6.39831 6.50028 6.58126 6.59942 6.77583 6.81550 7.17426 7.29802 7.46093 7.55982 7.68283 7.72170 7.80308 7.92329 8.14296 8.51785 8.77373 8.85919 9.26258 9.50572 10.97489 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.017342 B = 0.003629 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.197030 B = 7712.761029 C = 8776.527991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.119 4.119 3 C 0.273 3.727 4 H 0.053 0.947 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.069 3.931 8 N -0.879 5.879 9 Si 0.896 3.104 10 H -0.279 1.279 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.711 5.711 14 C 0.497 3.503 15 O -0.525 6.525 16 C 0.115 3.885 17 H 0.091 0.909 18 C -0.125 4.125 19 C -0.133 4.133 20 C 0.102 3.898 21 N -0.605 5.605 22 C 0.536 3.464 23 O -0.507 6.507 24 C -0.124 4.124 25 C -0.051 4.051 26 C -0.152 4.152 27 C -0.140 4.140 28 C -0.154 4.154 29 H 0.046 0.954 30 H 0.018 0.982 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.031 0.969 34 H 0.264 0.736 35 H 0.385 0.615 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.042 0.958 45 H 0.048 0.952 46 H 0.085 0.915 47 H 0.053 0.947 48 H 0.056 0.944 49 H 0.051 0.949 50 H 0.091 0.909 51 H 0.046 0.954 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.292 10.508 13.098 20.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.158 4.158 3 C 0.171 3.829 4 H 0.071 0.929 5 C -0.575 4.575 6 H 0.078 0.922 7 C -0.135 4.135 8 N -0.516 5.516 9 Si 0.723 3.277 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.200 1.200 13 N -0.360 5.360 14 C 0.280 3.720 15 O -0.402 6.402 16 C 0.008 3.992 17 H 0.109 0.891 18 C -0.164 4.164 19 C -0.171 4.171 20 C -0.021 4.021 21 N -0.340 5.340 22 C 0.325 3.675 23 O -0.382 6.382 24 C -0.163 4.163 25 C -0.051 4.051 26 C -0.209 4.209 27 C -0.198 4.198 28 C -0.211 4.211 29 H 0.065 0.935 30 H 0.037 0.963 31 H 0.071 0.929 32 H 0.094 0.906 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.217 0.783 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.086 0.914 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.107 0.893 44 H 0.061 0.939 45 H 0.067 0.933 46 H 0.104 0.896 47 H 0.072 0.928 48 H 0.075 0.925 49 H 0.070 0.930 50 H 0.110 0.890 51 H 0.065 0.935 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -12.904 9.693 12.073 20.155 hybrid contribution 1.351 -0.079 0.231 1.373 sum -11.553 9.614 12.304 19.424 Atomic orbital electron populations 1.21822 0.97504 0.98012 1.02041 1.21839 0.93313 0.99832 1.00785 1.18721 0.94021 0.88876 0.81267 0.92887 1.21184 0.90702 1.43919 1.01653 0.92202 1.24884 0.98310 0.95241 0.95048 1.69991 1.35656 1.43799 1.02120 0.86562 0.85211 0.78704 0.77198 1.20462 1.21239 1.19955 1.46421 1.14620 1.56544 1.18398 1.20381 0.82838 0.79730 0.89085 1.90673 1.50923 1.58753 1.39809 1.21550 0.83359 0.96861 0.97467 0.89075 1.22676 0.98521 0.93030 1.02132 1.22786 0.93756 0.97946 1.02585 1.22298 0.98135 0.81101 1.00576 1.48261 1.06023 1.08048 1.71716 1.20161 0.84284 0.87336 0.75730 1.90603 1.85426 1.14542 1.47581 1.21724 0.92207 0.99244 1.03173 1.20268 0.93042 0.94666 0.97142 1.22100 1.03941 0.98482 0.96376 1.21890 0.96433 1.00198 1.01252 1.22108 1.04079 1.00231 0.94653 0.93455 0.96263 0.92863 0.90602 0.94977 0.92626 0.78332 0.88968 0.89941 0.90152 0.89688 0.91404 0.90697 0.89641 0.89314 0.93900 0.93253 0.89635 0.92786 0.92500 0.92972 0.88997 0.93482 0.93643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 8.51 37.16 0.32 -2.98 16 2 C -0.12 -2.98 5.50 -26.73 -0.15 -3.13 16 3 C 0.27 6.95 2.11 -69.08 -0.15 6.80 16 4 H 0.05 1.59 7.52 -51.93 -0.39 1.20 16 5 C -0.54 -14.19 8.66 -34.44 -0.30 -14.49 16 6 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.87 5.16 -17.82 -0.09 1.78 16 8 N -0.88 -25.22 12.16 55.43 0.67 -24.55 16 9 Si 0.90 20.71 29.55 -169.99 -5.02 15.69 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 13 N -0.71 -14.72 4.69 -54.93 -0.26 -14.98 16 14 C 0.50 9.89 5.30 -10.98 -0.06 9.83 16 15 O -0.53 -12.47 11.96 -11.67 -0.14 -12.61 16 16 C 0.12 1.70 3.30 -68.10 -0.22 1.48 16 17 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 18 C -0.13 -1.37 6.43 -24.89 -0.16 -1.53 16 19 C -0.13 -1.29 7.09 -24.58 -0.17 -1.46 16 20 C 0.10 0.99 6.69 -2.52 -0.02 0.97 16 21 N -0.60 -8.41 2.88 -164.31 -0.47 -8.89 16 22 C 0.54 8.23 6.40 -10.99 -0.07 8.16 16 23 O -0.51 -9.62 10.40 -11.66 -0.12 -9.74 16 24 C -0.12 -1.43 3.78 -27.88 -0.11 -1.53 16 25 C -0.05 -0.61 0.77 -154.51 -0.12 -0.73 16 26 C -0.15 -1.87 8.18 37.16 0.30 -1.57 16 27 C -0.14 -1.31 8.47 37.15 0.31 -1.00 16 28 C -0.15 -2.23 8.17 37.16 0.30 -1.92 16 29 H 0.05 1.22 7.84 -51.93 -0.41 0.81 16 30 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 1.30 5.65 -51.93 -0.29 1.00 16 32 H 0.08 2.09 6.80 -51.93 -0.35 1.73 16 33 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.38 6.89 8.33 -40.82 -0.34 6.55 16 36 H 0.09 1.11 7.42 -51.93 -0.39 0.73 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.65 7.48 -51.93 -0.39 0.26 16 42 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.09 0.96 7.85 -51.93 -0.41 0.56 16 44 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.08 1.29 5.51 -51.93 -0.29 1.01 16 47 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 49 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.09 1.69 5.51 -51.93 -0.29 1.41 16 51 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 52 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 395.56 15.07 5.96 5.96 Total: -1.00 -32.74 395.56 -9.17 -41.92 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: -9.42 Total: 8.52 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -0.37 Total: -1.32 kcal Atomic # 7 Polarization: -48.36 SS G_CDS: -0.06 Total: -48.42 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.26 Total: -22.35 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.74 -9.17 -41.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183938979.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.222 kcal (2) G-P(sol) polarization free energy of solvation -32.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds