Wall clock time and date at job start Tue Mar 31 2020 15:36:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47103 * 2 1 4 4 H 1.08992 * 109.47354 * 304.90550 * 3 2 1 5 5 C 1.50698 * 109.47272 * 184.90136 * 3 2 1 6 6 H 1.08000 * 120.00184 * 245.45531 * 5 3 2 7 7 C 1.37874 * 119.99731 * 65.45527 * 5 3 2 8 8 N 1.31514 * 120.00161 * 9.47102 * 7 5 3 9 9 Si 1.86798 * 119.99922 * 189.46674 * 7 5 3 10 10 H 1.48498 * 109.47271 * 84.99878 * 9 7 5 11 11 H 1.48502 * 109.47336 * 204.99675 * 9 7 5 12 12 H 1.48493 * 109.47410 * 324.99545 * 9 7 5 13 13 N 1.46501 * 109.46726 * 64.90405 * 3 2 1 14 14 C 1.34776 * 120.00121 * 274.99926 * 13 3 2 15 15 O 1.21280 * 120.00009 * 0.02562 * 14 13 3 16 16 C 1.50710 * 119.99914 * 179.97438 * 14 13 3 17 17 H 1.08996 * 109.99835 * 300.36027 * 16 14 13 18 18 C 1.54323 * 109.87896 * 61.45378 * 16 14 13 19 19 C 1.55162 * 102.94029 * 97.22465 * 18 16 14 20 20 C 1.54911 * 101.58375 * 35.49910 * 19 18 16 21 21 N 1.47023 * 109.87696 * 179.26405 * 16 14 13 22 22 C 1.34771 * 125.65077 * 59.56048 * 21 16 14 23 23 O 1.21276 * 119.99998 * 359.97438 * 22 21 16 24 24 C 1.50705 * 119.99703 * 179.97438 * 22 21 16 25 25 C 1.53008 * 109.46880 * 179.97438 * 24 22 21 26 26 C 1.53005 * 109.46829 * 60.00302 * 25 24 22 27 27 C 1.52994 * 109.47033 * 180.02562 * 25 24 22 28 28 C 1.52996 * 109.47238 * 300.00360 * 25 24 22 29 29 H 1.08994 * 109.47462 * 59.99577 * 1 2 3 30 30 H 1.09006 * 109.46905 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46716 * 299.99156 * 1 2 3 32 32 H 1.08998 * 109.47416 * 240.00581 * 2 1 3 33 33 H 1.08994 * 109.47462 * 120.00423 * 2 1 3 34 34 H 0.96997 * 120.00279 * 179.97438 * 8 7 5 35 35 H 0.97007 * 119.99828 * 94.99785 * 13 3 2 36 36 H 1.08998 * 110.72691 * 338.86405 * 18 16 14 37 37 H 1.09003 * 110.86974 * 215.64997 * 18 16 14 38 38 H 1.09002 * 111.00638 * 277.42345 * 19 18 16 39 39 H 1.09000 * 111.03666 * 153.58797 * 19 18 16 40 40 H 1.08998 * 110.36761 * 81.82507 * 20 19 18 41 41 H 1.08996 * 110.36952 * 204.15146 * 20 19 18 42 42 H 1.09000 * 109.47307 * 300.00069 * 24 22 21 43 43 H 1.09003 * 109.47149 * 60.00459 * 24 22 21 44 44 H 1.09000 * 109.47276 * 59.99872 * 26 25 24 45 45 H 1.08998 * 109.46884 * 179.97438 * 26 25 24 46 46 H 1.09000 * 109.46916 * 299.99626 * 26 25 24 47 47 H 1.09006 * 109.47360 * 60.00002 * 27 25 24 48 48 H 1.08998 * 109.47321 * 180.02562 * 27 25 24 49 49 H 1.09000 * 109.47172 * 300.00189 * 27 25 24 50 50 H 1.09005 * 109.47149 * 60.00023 * 28 25 24 51 51 H 1.09004 * 109.47248 * 179.97438 * 28 25 24 52 52 H 1.08994 * 109.47112 * 299.99907 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6067 1.9811 -0.8427 5 6 3.5421 1.4443 -0.1214 6 1 4.1493 1.8090 0.6938 7 6 4.1411 0.9802 -1.2732 8 7 3.4096 0.7117 -2.3326 9 14 5.9918 0.7330 -1.3291 10 1 6.3290 -0.6065 -0.7838 11 1 6.4617 0.8278 -2.7346 12 1 6.6561 1.7810 -0.5134 13 7 1.6504 2.0981 1.2509 14 6 0.4329 2.6650 1.3638 15 8 -0.3403 2.6321 0.4301 16 6 0.0320 3.3390 2.6508 17 1 0.0649 2.6233 3.4723 18 6 0.9829 4.5185 2.9439 19 6 0.1950 5.7420 2.4056 20 6 -1.2635 5.3483 2.7487 21 7 -1.3242 3.8925 2.5239 22 6 -2.4383 3.1860 2.2485 23 8 -2.3701 1.9867 2.0817 24 6 -3.7689 3.8864 2.1477 25 6 -4.8609 2.8633 1.8282 26 6 -4.9192 1.8153 2.9415 27 6 -6.2116 3.5744 1.7253 28 6 -4.5435 2.1772 0.4980 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8934 -0.5137 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 3.8310 0.3855 -3.1431 35 1 2.2687 2.1241 1.9979 36 1 1.9234 4.3986 2.4062 37 1 1.1620 4.6161 4.0147 38 1 0.3277 5.8493 1.3290 39 1 0.4860 6.6546 2.9258 40 1 -1.4840 5.5807 3.7905 41 1 -1.9609 5.8635 2.0883 42 1 -3.9948 4.3755 3.0952 43 1 -3.7275 4.6327 1.3543 44 1 -5.1452 2.3041 3.8892 45 1 -5.6973 1.0867 2.7142 46 1 -3.9568 1.3087 3.0144 47 1 -6.1698 4.3208 0.9320 48 1 -6.9896 2.8455 1.4981 49 1 -6.4379 4.0635 2.6727 50 1 -3.5811 1.6706 0.5710 51 1 -5.3212 1.4480 0.2707 52 1 -4.5020 2.9237 -0.2950 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183938979.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:40 Heat of formation + Delta-G solvation = -106.370400 kcal Electronic energy + Delta-G solvation = -30125.277042 eV Core-core repulsion = 26316.384408 eV Total energy + Delta-G solvation = -3808.892633 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.72001 -40.26494 -38.60498 -36.99607 -36.72462 -34.31411 -33.22834 -32.48951 -30.63151 -29.10880 -28.54974 -28.10759 -28.00268 -25.27435 -24.53765 -22.99950 -22.07083 -21.17309 -20.46971 -19.45215 -18.95294 -18.05237 -17.69706 -17.23543 -16.58794 -16.33446 -16.16619 -15.72536 -15.55218 -15.31530 -15.10831 -14.68023 -14.66844 -14.42193 -14.13099 -13.78879 -13.65422 -13.46553 -13.39468 -13.28333 -12.94611 -12.92313 -12.86226 -12.64637 -12.63117 -12.30709 -12.21189 -12.16229 -12.12086 -12.08641 -11.93038 -11.88154 -11.63147 -11.58246 -11.52783 -11.10252 -10.62255 -10.52092 -10.32962 -9.57230 -9.46733 -8.19312 -6.32979 1.43042 1.45162 1.54265 1.76557 1.96310 2.09190 2.38009 2.75993 3.11995 3.52039 3.65138 3.77103 3.90018 3.93437 4.01847 4.14415 4.26774 4.36832 4.41174 4.49664 4.55423 4.60462 4.64219 4.65496 4.71304 4.77413 4.83052 4.86604 4.89604 4.97065 4.97708 5.04554 5.07760 5.08486 5.18830 5.19092 5.25416 5.28275 5.34391 5.40386 5.43650 5.52961 5.56057 5.63317 5.67490 5.71680 5.95238 6.07537 6.67728 6.76834 7.06313 7.34074 7.43240 7.69284 8.89454 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.017342 B = 0.003629 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.197030 B = 7712.761029 C = 8776.527991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.110 4.110 3 C 0.284 3.716 4 H -0.003 1.003 5 C -0.547 4.547 6 H 0.075 0.925 7 C 0.015 3.985 8 N -0.919 5.919 9 Si 0.969 3.031 10 H -0.272 1.272 11 H -0.289 1.289 12 H -0.259 1.259 13 N -0.708 5.708 14 C 0.490 3.510 15 O -0.570 6.570 16 C 0.119 3.881 17 H 0.098 0.902 18 C -0.118 4.118 19 C -0.129 4.129 20 C 0.097 3.903 21 N -0.611 5.611 22 C 0.520 3.480 23 O -0.553 6.553 24 C -0.116 4.116 25 C -0.051 4.051 26 C -0.147 4.147 27 C -0.133 4.133 28 C -0.150 4.150 29 H 0.017 0.983 30 H 0.035 0.965 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.044 0.956 34 H 0.264 0.736 35 H 0.401 0.599 36 H 0.077 0.923 37 H 0.123 0.877 38 H 0.048 0.952 39 H 0.124 0.876 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.121 0.879 43 H 0.097 0.903 44 H 0.064 0.936 45 H 0.049 0.951 46 H 0.052 0.948 47 H 0.059 0.941 48 H 0.057 0.943 49 H 0.074 0.926 50 H 0.047 0.953 51 H 0.050 0.950 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.260 12.813 16.279 24.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.149 4.149 3 C 0.180 3.820 4 H 0.015 0.985 5 C -0.585 4.585 6 H 0.093 0.907 7 C -0.185 4.185 8 N -0.557 5.557 9 Si 0.793 3.207 10 H -0.198 1.198 11 H -0.215 1.215 12 H -0.183 1.183 13 N -0.359 5.359 14 C 0.275 3.725 15 O -0.449 6.449 16 C 0.010 3.990 17 H 0.116 0.884 18 C -0.156 4.156 19 C -0.167 4.167 20 C -0.024 4.024 21 N -0.345 5.345 22 C 0.311 3.689 23 O -0.431 6.431 24 C -0.156 4.156 25 C -0.051 4.051 26 C -0.204 4.204 27 C -0.190 4.190 28 C -0.208 4.208 29 H 0.036 0.964 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.235 0.765 36 H 0.096 0.904 37 H 0.141 0.859 38 H 0.067 0.933 39 H 0.142 0.858 40 H 0.124 0.876 41 H 0.103 0.897 42 H 0.139 0.861 43 H 0.115 0.885 44 H 0.083 0.917 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.078 0.922 48 H 0.076 0.924 49 H 0.093 0.907 50 H 0.066 0.934 51 H 0.069 0.931 52 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -12.863 12.051 15.308 23.346 hybrid contribution 1.300 -0.802 -0.802 1.725 sum -11.563 11.248 14.506 21.695 Atomic orbital electron populations 1.21596 0.96900 0.98460 1.00369 1.21701 0.93590 0.99701 0.99899 1.18226 0.93642 0.88438 0.81649 0.98549 1.21543 0.91186 1.43634 1.02110 0.90698 1.25824 1.03334 0.94796 0.94562 1.70158 1.37870 1.44860 1.02810 0.85411 0.79075 0.79074 0.77112 1.19773 1.21493 1.18334 1.46186 1.15719 1.56618 1.17348 1.21440 0.81639 0.78767 0.90645 1.90655 1.51985 1.60127 1.42093 1.21581 0.85140 0.98377 0.93854 0.88391 1.22737 0.96786 0.91542 1.04495 1.22821 0.93756 0.99036 1.01108 1.22647 0.98303 0.78335 1.03095 1.48505 1.05121 1.09982 1.70937 1.20967 0.85843 0.87153 0.74926 1.90599 1.86317 1.16762 1.49451 1.21768 0.89720 0.98844 1.05249 1.20292 0.94915 0.94827 0.95082 1.22013 1.02105 0.98653 0.97635 1.21822 0.94321 1.00154 1.02744 1.22037 1.01803 1.00209 0.96723 0.96385 0.94573 0.93193 0.93315 0.93681 0.92744 0.76469 0.90421 0.85878 0.93286 0.85756 0.87593 0.89655 0.86051 0.88509 0.91674 0.93139 0.92916 0.92181 0.92386 0.90721 0.93395 0.93053 0.93945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.93 8.51 71.98 0.61 -5.32 16 2 C -0.11 -5.77 5.50 30.59 0.17 -5.61 16 3 C 0.28 15.17 2.11 44.24 0.09 15.26 16 4 H 0.00 -0.22 7.52 -2.39 -0.02 -0.24 16 5 C -0.55 -29.43 8.66 25.60 0.22 -29.21 16 6 H 0.07 3.72 7.74 -2.91 -0.02 3.69 16 7 C 0.02 0.83 5.16 84.65 0.44 1.27 16 8 N -0.92 -54.89 12.16 21.45 0.26 -54.63 16 9 Si 0.97 42.68 29.55 68.60 2.03 44.70 16 10 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 11 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 12 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 13 N -0.71 -30.24 4.69 -446.10 -2.09 -32.33 16 14 C 0.49 20.19 5.30 87.66 0.46 20.66 16 15 O -0.57 -28.83 11.96 13.44 0.16 -28.67 16 16 C 0.12 3.40 3.30 44.60 0.15 3.55 16 17 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 18 C -0.12 -2.27 6.43 31.78 0.20 -2.06 16 19 C -0.13 -2.14 7.09 31.99 0.23 -1.91 16 20 C 0.10 1.55 6.69 86.85 0.58 2.13 16 21 N -0.61 -16.22 2.88 -792.16 -2.28 -18.50 16 22 C 0.52 15.91 6.40 87.66 0.56 16.47 16 23 O -0.55 -22.03 10.40 13.45 0.14 -21.89 16 24 C -0.12 -2.47 3.78 29.85 0.11 -2.36 16 25 C -0.05 -1.16 0.77 -52.18 -0.04 -1.20 16 26 C -0.15 -3.51 8.18 71.98 0.59 -2.93 16 27 C -0.13 -2.13 8.47 71.98 0.61 -1.52 16 28 C -0.15 -4.57 8.17 71.98 0.59 -3.98 16 29 H 0.02 0.97 7.84 -2.39 -0.02 0.95 16 30 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.05 2.57 5.65 -2.39 -0.01 2.56 16 32 H 0.05 2.81 6.80 -2.39 -0.02 2.80 16 33 H 0.04 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 35 H 0.40 14.33 8.33 -92.70 -0.77 13.56 16 36 H 0.08 1.75 7.42 -2.39 -0.02 1.74 16 37 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.09 1.20 7.48 -2.39 -0.02 1.18 16 42 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.10 1.91 7.85 -2.39 -0.02 1.89 16 44 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.05 1.65 5.51 -2.39 -0.01 1.63 16 47 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 48 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.05 1.91 5.51 -2.38 -0.01 1.90 16 51 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 52 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -78.76 395.56 3.91 -74.85 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: 0.12 Total: 33.22 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 5.58 Total: 3.24 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -4.11 Total: -105.46 kcal Atomic # 8 Polarization: -50.86 SS G_CDS: 0.30 Total: -50.56 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.70 kcal Total: -78.76 3.91 -74.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183938979.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.519 kcal (2) G-P(sol) polarization free energy of solvation -78.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds