Wall clock time and date at job start Tue Mar 31 2020 14:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47354 * 2 1 4 4 H 1.09002 * 109.48061 * 55.02048 * 3 2 1 5 5 C 1.53085 * 109.49405 * 175.05133 * 3 2 1 6 6 C 1.53176 * 109.16720 * 177.59831 * 5 3 2 7 7 H 1.08995 * 109.61474 * 62.92971 * 6 5 3 8 8 C 1.50697 * 109.54626 * 183.15442 * 6 5 3 9 9 O 1.21283 * 120.00012 * 359.55155 * 8 6 5 10 10 N 1.34777 * 120.00023 * 179.55746 * 8 6 5 11 11 C 1.46499 * 119.99986 * 179.97438 * 10 8 6 12 12 C 1.53000 * 109.47375 * 179.97438 * 11 10 8 13 13 C 1.53043 * 109.45881 * 295.07150 * 12 11 10 14 14 C 1.53187 * 109.31272 * 178.61611 * 13 12 11 15 15 N 1.46918 * 108.77839 * 54.62927 * 14 13 12 16 16 C 1.36943 * 120.63118 * 126.37027 * 15 14 13 17 17 H 1.08000 * 120.00120 * 207.69877 * 16 15 14 18 18 C 1.38813 * 119.99607 * 27.70235 * 16 15 14 19 19 N 1.31612 * 120.00509 * 17.34756 * 18 16 15 20 20 Si 1.86806 * 119.99835 * 197.35113 * 18 16 15 21 21 H 1.48501 * 109.47221 * 59.99732 * 20 18 16 22 22 H 1.48493 * 109.47212 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46921 * 300.00019 * 20 18 16 24 24 C 1.46927 * 118.74181 * 306.39379 * 15 14 13 25 25 C 1.53042 * 109.46414 * 175.00224 * 12 11 10 26 26 C 1.53176 * 109.03404 * 303.02149 * 6 5 3 27 27 C 1.53092 * 109.16582 * 56.98138 * 26 6 5 28 28 O 1.42902 * 109.41273 * 302.38955 * 27 26 6 29 29 H 1.09001 * 109.47072 * 60.00046 * 1 2 3 30 30 H 1.09005 * 109.47406 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47265 * 299.99831 * 1 2 3 32 32 H 1.09001 * 109.47028 * 239.99851 * 2 1 3 33 33 H 1.09001 * 109.46958 * 120.00498 * 2 1 3 34 34 H 1.09007 * 109.52347 * 57.69051 * 5 3 2 35 35 H 1.08999 * 109.52541 * 297.50774 * 5 3 2 36 36 H 0.96998 * 120.00150 * 359.97438 * 10 8 6 37 37 H 1.09006 * 109.47455 * 299.99894 * 11 10 8 38 38 H 1.09004 * 109.46953 * 59.99949 * 11 10 8 39 39 H 1.09001 * 109.45711 * 55.02563 * 12 11 10 40 40 H 1.09010 * 109.49319 * 298.56089 * 13 12 11 41 41 H 1.09001 * 109.49891 * 58.65524 * 13 12 11 42 42 H 1.08997 * 109.58458 * 294.83939 * 14 13 12 43 43 H 1.09003 * 109.58654 * 174.42202 * 14 13 12 44 44 H 0.97002 * 120.00399 * 179.97438 * 19 18 16 45 45 H 1.09002 * 109.58322 * 293.82153 * 24 15 14 46 46 H 1.08997 * 109.58701 * 173.39604 * 24 15 14 47 47 H 1.09002 * 109.49225 * 301.33519 * 25 12 11 48 48 H 1.09003 * 109.49657 * 61.42973 * 25 12 11 49 49 H 1.09010 * 109.52388 * 176.88310 * 26 6 5 50 50 H 1.08994 * 109.52521 * 297.06919 * 26 6 5 51 51 H 1.08998 * 109.48272 * 62.37253 * 27 26 6 52 52 H 1.08998 * 109.48379 * 182.41113 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6058 1.9816 0.8420 5 6 3.5658 1.4448 0.1245 6 6 4.0731 2.8888 0.0634 7 1 3.6808 3.4506 0.9110 8 6 5.5795 2.8962 0.1073 9 8 6.1889 1.8508 0.1885 10 7 6.2494 4.0646 0.0564 11 6 7.7137 4.0719 0.0997 12 6 8.2190 5.5142 0.0267 13 6 7.8494 6.1157 -1.3312 14 6 8.3264 7.5704 -1.3875 15 7 9.7627 7.6094 -1.0810 16 6 10.6418 8.2213 -1.9342 17 1 11.6701 7.8936 -1.9765 18 6 10.2114 9.2628 -2.7447 19 7 9.0871 9.8894 -2.4697 20 14 11.2278 9.7750 -4.2260 21 1 11.3589 8.6260 -5.1576 22 1 10.5563 10.9023 -4.9211 23 1 12.5765 10.2041 -3.7764 24 6 10.2380 6.9790 0.1581 25 6 9.7398 5.5309 0.1971 26 6 3.5954 3.5313 -1.2425 27 6 2.0684 3.4485 -1.3142 28 8 1.6620 2.0816 -1.2210 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.9990 0.8715 -0.6952 35 1 3.8544 0.9973 1.0755 36 1 5.7620 4.9007 -0.0088 37 1 8.0520 3.6146 1.0296 38 1 8.1050 3.5069 -0.7464 39 1 7.7580 6.1010 0.8212 40 1 8.3302 5.5442 -2.1252 41 1 6.7678 6.0820 -1.4618 42 1 7.7799 8.1627 -0.6537 43 1 8.1547 7.9728 -2.3859 44 1 8.7865 10.6174 -3.0358 45 1 9.8474 7.5231 1.0180 46 1 11.3277 6.9912 0.1795 47 1 10.0036 5.0811 1.1543 48 1 10.2027 4.9649 -0.6113 49 1 3.9051 4.5761 -1.2691 50 1 4.0292 3.0002 -2.0898 51 1 1.6346 4.0138 -0.4894 52 1 1.7258 3.8658 -2.2610 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330772671.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:32 Heat of formation + Delta-G solvation = -94.994249 kcal Electronic energy + Delta-G solvation = -28314.338428 eV Core-core repulsion = 24505.939101 eV Total energy + Delta-G solvation = -3808.399326 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.55059 -39.04880 -37.80162 -35.00077 -34.40022 -33.91740 -32.81993 -30.66544 -30.09428 -29.87689 -27.35123 -25.86838 -24.19553 -23.68249 -22.41341 -22.04522 -21.13359 -20.89216 -19.99771 -19.07962 -17.32896 -16.76143 -16.74324 -16.23098 -15.78271 -15.32461 -14.89372 -14.83666 -14.50976 -14.12648 -13.99335 -13.84809 -13.63132 -13.54525 -13.45638 -13.21556 -12.93416 -12.41548 -12.34459 -12.13338 -12.10369 -11.84451 -11.63910 -11.46002 -11.41586 -11.21193 -11.00713 -10.94377 -10.72726 -10.64925 -10.55049 -10.26868 -10.26285 -10.07699 -9.92673 -9.68607 -9.51891 -9.43662 -8.99010 -8.48580 -6.69671 -5.81250 -3.22880 2.59110 3.15960 3.36977 3.42666 3.44354 3.48322 4.27022 4.41323 4.47040 4.48185 4.59399 4.77527 4.79554 5.00740 5.02717 5.04928 5.13170 5.16030 5.23334 5.32158 5.35073 5.39368 5.40841 5.43986 5.54293 5.56931 5.65916 5.71135 5.79882 5.82371 5.85206 5.89772 5.99215 6.04016 6.04949 6.12653 6.26296 6.40268 6.50874 6.54624 6.64649 6.73409 6.79366 6.95661 6.95956 7.32973 7.50703 7.61352 7.77372 8.20259 8.43026 9.19504 9.83107 10.39523 11.27309 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.022093 B = 0.002294 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.062592 B =12204.776237 C =13061.596095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.090 3.910 4 H 0.058 0.942 5 C -0.129 4.129 6 C -0.110 4.110 7 H 0.096 0.904 8 C 0.516 3.484 9 O -0.544 6.544 10 N -0.723 5.723 11 C 0.123 3.877 12 C -0.090 4.090 13 C -0.134 4.134 14 C 0.171 3.829 15 N -0.592 5.592 16 C -0.252 4.252 17 H 0.065 0.935 18 C 0.001 3.999 19 N -0.904 5.904 20 Si 0.902 3.098 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.283 1.283 24 C 0.146 3.854 25 C -0.125 4.125 26 C -0.149 4.149 27 C 0.065 3.935 28 O -0.377 6.377 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.401 0.599 37 H 0.061 0.939 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.045 0.955 42 H 0.016 0.984 43 H 0.087 0.913 44 H 0.254 0.746 45 H 0.017 0.983 46 H 0.054 0.946 47 H 0.052 0.948 48 H 0.061 0.939 49 H 0.081 0.919 50 H 0.079 0.921 51 H 0.052 0.948 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.202 -14.913 6.604 22.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C 0.032 3.968 4 H 0.076 0.924 5 C -0.167 4.167 6 C -0.131 4.131 7 H 0.115 0.885 8 C 0.302 3.698 9 O -0.421 6.421 10 N -0.374 5.374 11 C 0.000 4.000 12 C -0.109 4.109 13 C -0.174 4.174 14 C 0.045 3.955 15 N -0.315 5.315 16 C -0.382 4.382 17 H 0.082 0.918 18 C -0.197 4.197 19 N -0.548 5.548 20 Si 0.732 3.268 21 H -0.210 1.210 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.020 3.980 25 C -0.165 4.165 26 C -0.187 4.187 27 C -0.012 4.012 28 O -0.296 6.296 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.099 0.901 35 H 0.097 0.903 36 H 0.236 0.764 37 H 0.080 0.920 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.034 0.966 43 H 0.105 0.895 44 H 0.064 0.936 45 H 0.035 0.965 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.079 0.921 49 H 0.100 0.900 50 H 0.098 0.902 51 H 0.070 0.930 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -15.900 -15.597 6.427 23.181 hybrid contribution 0.516 1.015 -0.565 1.271 sum -15.383 -14.583 5.862 21.992 Atomic orbital electron populations 1.21719 0.95240 1.01508 1.02226 1.21538 0.96611 0.94261 1.02969 1.22187 0.93261 0.94224 0.87087 0.92412 1.22037 0.95326 0.94989 1.04316 1.21385 0.92572 0.99129 1.00026 0.88546 1.20496 0.89620 0.83740 0.75988 1.90690 1.70131 1.31764 1.49557 1.46104 1.08126 1.08690 1.74478 1.21560 0.78600 0.98227 1.01621 1.21307 0.97143 0.93193 0.99279 1.22252 0.98609 1.01098 0.95394 1.20768 0.83645 0.89482 1.01628 1.44044 1.03546 1.64229 1.19684 1.19152 0.93181 1.10519 1.15300 0.91751 1.25025 0.97917 0.95872 1.00890 1.70016 1.23542 1.22951 1.38333 0.86374 0.79624 0.77722 0.83093 1.21041 1.21642 1.20883 1.20884 0.97442 0.90253 0.89464 1.21987 0.93977 1.00142 1.00353 1.22223 0.97521 1.01874 0.97076 1.22549 0.92966 0.83221 1.02497 1.87938 1.78445 1.24605 1.38629 0.91916 0.92801 0.92999 0.90967 0.90552 0.90092 0.90264 0.76444 0.92030 0.91692 0.91376 0.92527 0.93684 0.96571 0.89468 0.93615 0.96530 0.92728 0.92967 0.92070 0.90009 0.90247 0.92964 0.88352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.81 37.16 0.36 -0.66 16 2 C -0.12 -0.87 5.64 -26.73 -0.15 -1.02 16 3 C 0.09 0.76 2.64 -26.69 -0.07 0.69 16 4 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 5 C -0.13 -1.25 4.01 -26.60 -0.11 -1.35 16 6 C -0.11 -1.04 2.62 -91.59 -0.24 -1.28 16 7 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 8 C 0.52 6.63 7.16 -10.99 -0.08 6.55 16 9 O -0.54 -9.07 15.97 5.55 0.09 -8.98 16 10 N -0.72 -8.77 5.18 -60.29 -0.31 -9.08 16 11 C 0.12 1.72 5.06 -4.04 -0.02 1.70 16 12 C -0.09 -1.39 2.19 -90.58 -0.20 -1.58 16 13 C -0.13 -2.36 5.25 -26.61 -0.14 -2.50 16 14 C 0.17 3.89 5.31 -3.72 -0.02 3.87 16 15 N -0.59 -14.48 2.99 -172.33 -0.52 -14.99 16 16 C -0.25 -6.83 9.59 -15.06 -0.14 -6.98 16 17 H 0.06 1.72 7.89 -52.49 -0.41 1.31 16 18 C 0.00 0.04 4.91 -17.43 -0.09 -0.05 16 19 N -0.90 -25.80 11.19 55.49 0.62 -25.18 16 20 Si 0.90 21.52 29.59 -169.99 -5.03 16.49 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 C 0.15 2.97 6.52 -3.71 -0.02 2.95 16 25 C -0.12 -2.07 5.36 -26.61 -0.14 -2.21 16 26 C -0.15 -1.27 5.29 -26.59 -0.14 -1.42 16 27 C 0.06 0.50 6.84 37.20 0.25 0.76 16 28 O -0.38 -3.65 9.94 -35.23 -0.35 -4.00 16 29 H 0.06 0.48 7.82 -51.93 -0.41 0.08 16 30 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.93 8.03 -51.93 -0.42 0.51 16 35 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.40 4.12 7.14 -40.82 -0.29 3.83 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 41 H 0.04 0.68 7.15 -51.93 -0.37 0.31 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.09 2.26 6.04 -51.93 -0.31 1.94 16 44 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 47 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 48 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.08 0.61 7.67 -51.92 -0.40 0.21 16 50 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 51 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 52 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 398.91 15.07 6.01 6.01 Total: -1.00 -31.30 398.91 -10.20 -41.50 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -9.77 Total: 0.78 kcal Atomic # 6 Polarization: -1.60 SS G_CDS: -0.94 Total: -2.54 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: -0.21 Total: -49.25 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.26 Total: -12.99 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.03 Total: 16.49 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.30 -10.20 -41.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330772671.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.493 kcal (2) G-P(sol) polarization free energy of solvation -31.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds