Wall clock time and date at job start Tue Mar 31 2020 14:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47354 * 2 1 4 4 H 1.09002 * 109.48061 * 55.02048 * 3 2 1 5 5 C 1.53085 * 109.49405 * 175.05133 * 3 2 1 6 6 C 1.53176 * 109.16720 * 177.59831 * 5 3 2 7 7 H 1.08995 * 109.61474 * 62.92971 * 6 5 3 8 8 C 1.50697 * 109.54626 * 183.15442 * 6 5 3 9 9 O 1.21283 * 120.00012 * 359.55155 * 8 6 5 10 10 N 1.34777 * 120.00023 * 179.55746 * 8 6 5 11 11 C 1.46499 * 119.99986 * 179.97438 * 10 8 6 12 12 C 1.53000 * 109.47375 * 179.97438 * 11 10 8 13 13 C 1.53043 * 109.45881 * 295.07150 * 12 11 10 14 14 C 1.53187 * 109.31272 * 178.61611 * 13 12 11 15 15 N 1.46918 * 108.77839 * 54.62927 * 14 13 12 16 16 C 1.36943 * 120.63118 * 126.37027 * 15 14 13 17 17 H 1.08000 * 120.00120 * 207.69877 * 16 15 14 18 18 C 1.38813 * 119.99607 * 27.70235 * 16 15 14 19 19 N 1.31612 * 120.00509 * 17.34756 * 18 16 15 20 20 Si 1.86806 * 119.99835 * 197.35113 * 18 16 15 21 21 H 1.48501 * 109.47221 * 59.99732 * 20 18 16 22 22 H 1.48493 * 109.47212 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.46921 * 300.00019 * 20 18 16 24 24 C 1.46927 * 118.74181 * 306.39379 * 15 14 13 25 25 C 1.53042 * 109.46414 * 175.00224 * 12 11 10 26 26 C 1.53176 * 109.03404 * 303.02149 * 6 5 3 27 27 C 1.53092 * 109.16582 * 56.98138 * 26 6 5 28 28 O 1.42902 * 109.41273 * 302.38955 * 27 26 6 29 29 H 1.09001 * 109.47072 * 60.00046 * 1 2 3 30 30 H 1.09005 * 109.47406 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47265 * 299.99831 * 1 2 3 32 32 H 1.09001 * 109.47028 * 239.99851 * 2 1 3 33 33 H 1.09001 * 109.46958 * 120.00498 * 2 1 3 34 34 H 1.09007 * 109.52347 * 57.69051 * 5 3 2 35 35 H 1.08999 * 109.52541 * 297.50774 * 5 3 2 36 36 H 0.96998 * 120.00150 * 359.97438 * 10 8 6 37 37 H 1.09006 * 109.47455 * 299.99894 * 11 10 8 38 38 H 1.09004 * 109.46953 * 59.99949 * 11 10 8 39 39 H 1.09001 * 109.45711 * 55.02563 * 12 11 10 40 40 H 1.09010 * 109.49319 * 298.56089 * 13 12 11 41 41 H 1.09001 * 109.49891 * 58.65524 * 13 12 11 42 42 H 1.08997 * 109.58458 * 294.83939 * 14 13 12 43 43 H 1.09003 * 109.58654 * 174.42202 * 14 13 12 44 44 H 0.97002 * 120.00399 * 179.97438 * 19 18 16 45 45 H 1.09002 * 109.58322 * 293.82153 * 24 15 14 46 46 H 1.08997 * 109.58701 * 173.39604 * 24 15 14 47 47 H 1.09002 * 109.49225 * 301.33519 * 25 12 11 48 48 H 1.09003 * 109.49657 * 61.42973 * 25 12 11 49 49 H 1.09010 * 109.52388 * 176.88310 * 26 6 5 50 50 H 1.08994 * 109.52521 * 297.06919 * 26 6 5 51 51 H 1.08998 * 109.48272 * 62.37253 * 27 26 6 52 52 H 1.08998 * 109.48379 * 182.41113 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6058 1.9816 0.8420 5 6 3.5658 1.4448 0.1245 6 6 4.0731 2.8888 0.0634 7 1 3.6808 3.4506 0.9110 8 6 5.5795 2.8962 0.1073 9 8 6.1889 1.8508 0.1885 10 7 6.2494 4.0646 0.0564 11 6 7.7137 4.0719 0.0997 12 6 8.2190 5.5142 0.0267 13 6 7.8494 6.1157 -1.3312 14 6 8.3264 7.5704 -1.3875 15 7 9.7627 7.6094 -1.0810 16 6 10.6418 8.2213 -1.9342 17 1 11.6701 7.8936 -1.9765 18 6 10.2114 9.2628 -2.7447 19 7 9.0871 9.8894 -2.4697 20 14 11.2278 9.7750 -4.2260 21 1 11.3589 8.6260 -5.1576 22 1 10.5563 10.9023 -4.9211 23 1 12.5765 10.2041 -3.7764 24 6 10.2380 6.9790 0.1581 25 6 9.7398 5.5309 0.1971 26 6 3.5954 3.5313 -1.2425 27 6 2.0684 3.4485 -1.3142 28 8 1.6620 2.0816 -1.2210 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.9990 0.8715 -0.6952 35 1 3.8544 0.9973 1.0755 36 1 5.7620 4.9007 -0.0088 37 1 8.0520 3.6146 1.0296 38 1 8.1050 3.5069 -0.7464 39 1 7.7580 6.1010 0.8212 40 1 8.3302 5.5442 -2.1252 41 1 6.7678 6.0820 -1.4618 42 1 7.7799 8.1627 -0.6537 43 1 8.1547 7.9728 -2.3859 44 1 8.7865 10.6174 -3.0358 45 1 9.8474 7.5231 1.0180 46 1 11.3277 6.9912 0.1795 47 1 10.0036 5.0811 1.1543 48 1 10.2027 4.9649 -0.6113 49 1 3.9051 4.5761 -1.2691 50 1 4.0292 3.0002 -2.0898 51 1 1.6346 4.0138 -0.4894 52 1 1.7258 3.8658 -2.2610 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330772671.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:31 Heat of formation + Delta-G solvation = -113.702778 kcal Electronic energy + Delta-G solvation = -28315.149690 eV Core-core repulsion = 24505.939101 eV Total energy + Delta-G solvation = -3809.210589 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.43949 -39.99055 -39.22323 -36.42066 -35.11742 -34.69687 -34.35563 -32.34768 -31.51846 -30.73179 -28.70616 -26.94619 -25.57563 -24.55194 -23.87022 -23.05375 -22.42101 -21.71735 -21.05137 -20.49511 -18.73394 -18.16160 -17.42064 -17.11658 -16.82909 -16.73863 -16.25135 -15.70792 -15.51614 -15.50820 -15.30141 -14.93276 -14.75204 -14.58747 -14.56690 -14.34844 -13.98547 -13.88836 -13.75196 -13.35162 -13.07880 -12.83585 -12.74827 -12.69938 -12.55115 -12.35851 -12.32157 -12.10849 -11.97939 -11.84863 -11.78907 -11.62318 -11.60509 -11.35008 -11.23215 -11.13367 -10.88623 -10.52596 -10.36428 -10.07665 -8.66822 -7.87499 -5.31386 1.46023 1.48135 1.54741 1.59593 2.18358 2.51084 2.87509 3.26558 3.55831 3.60921 3.71357 3.76308 3.84824 3.93978 3.95405 4.05729 4.14489 4.18569 4.37842 4.41167 4.45355 4.52276 4.53437 4.54157 4.68304 4.71927 4.73842 4.75132 4.78458 4.85143 4.91612 4.92864 5.03615 5.07528 5.12038 5.14237 5.16816 5.19632 5.24958 5.29028 5.32306 5.41551 5.43340 5.47678 5.56240 5.66553 5.79828 6.34086 6.40009 6.53631 7.16350 7.21956 7.88608 8.38684 9.18327 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.022093 B = 0.002294 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.062592 B =12204.776237 C =13061.596095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.118 4.118 3 C 0.093 3.907 4 H 0.075 0.925 5 C -0.125 4.125 6 C -0.103 4.103 7 H 0.124 0.876 8 C 0.515 3.485 9 O -0.586 6.586 10 N -0.715 5.715 11 C 0.135 3.865 12 C -0.078 4.078 13 C -0.120 4.120 14 C 0.176 3.824 15 N -0.612 5.612 16 C -0.263 4.263 17 H 0.063 0.937 18 C -0.050 4.050 19 N -0.932 5.932 20 Si 0.963 3.037 21 H -0.281 1.281 22 H -0.293 1.293 23 H -0.276 1.276 24 C 0.141 3.859 25 C -0.116 4.116 26 C -0.145 4.145 27 C 0.062 3.938 28 O -0.396 6.396 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.054 0.946 35 H 0.078 0.922 36 H 0.412 0.588 37 H 0.067 0.933 38 H 0.050 0.950 39 H 0.079 0.921 40 H 0.042 0.958 41 H 0.072 0.928 42 H 0.001 0.999 43 H 0.051 0.949 44 H 0.250 0.750 45 H 0.018 0.982 46 H 0.051 0.949 47 H 0.083 0.917 48 H 0.052 0.948 49 H 0.097 0.903 50 H 0.058 0.942 51 H 0.072 0.928 52 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.295 -15.446 7.660 24.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.156 4.156 3 C 0.035 3.965 4 H 0.092 0.908 5 C -0.164 4.164 6 C -0.124 4.124 7 H 0.142 0.858 8 C 0.302 3.698 9 O -0.466 6.466 10 N -0.367 5.367 11 C 0.011 3.989 12 C -0.097 4.097 13 C -0.159 4.159 14 C 0.050 3.950 15 N -0.336 5.336 16 C -0.394 4.394 17 H 0.080 0.920 18 C -0.246 4.246 19 N -0.578 5.578 20 Si 0.792 3.208 21 H -0.207 1.207 22 H -0.219 1.219 23 H -0.202 1.202 24 C 0.016 3.984 25 C -0.156 4.156 26 C -0.183 4.183 27 C -0.014 4.014 28 O -0.315 6.315 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.249 0.751 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.097 0.903 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.019 0.981 43 H 0.069 0.931 44 H 0.059 0.941 45 H 0.036 0.964 46 H 0.069 0.931 47 H 0.102 0.898 48 H 0.071 0.929 49 H 0.115 0.885 50 H 0.077 0.923 51 H 0.090 0.910 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.999 -16.130 7.497 24.604 hybrid contribution 0.891 1.180 -0.855 1.708 sum -16.108 -14.950 6.642 22.959 Atomic orbital electron populations 1.21685 0.94573 1.02011 1.02057 1.21576 0.97171 0.93898 1.02936 1.22237 0.92157 0.94831 0.87268 0.90751 1.21995 0.96320 0.94868 1.03187 1.21416 0.89947 0.99481 1.01599 0.85770 1.21073 0.90944 0.83025 0.74745 1.90676 1.71235 1.33223 1.51476 1.46017 1.07430 1.09249 1.73996 1.21287 0.79684 0.96576 1.01332 1.21156 0.96459 0.94114 0.97933 1.22036 1.00033 0.97268 0.96522 1.20608 0.83101 0.92300 0.98993 1.44335 1.03877 1.64451 1.20947 1.19456 0.93640 1.10398 1.15864 0.91972 1.25733 0.99204 0.96280 1.03338 1.70156 1.25029 1.23469 1.39175 0.85405 0.78348 0.77119 0.79964 1.20710 1.21888 1.20227 1.21044 0.97440 0.92198 0.87761 1.21863 0.94636 0.97282 1.01772 1.22215 0.98194 1.02282 0.95653 1.22688 0.92205 0.82673 1.03859 1.87928 1.78568 1.25664 1.39349 0.93043 0.92029 0.92119 0.92222 0.89436 0.92676 0.90360 0.75070 0.91440 0.93131 0.90309 0.93949 0.90923 0.98059 0.93084 0.94097 0.96425 0.93065 0.89844 0.92923 0.88490 0.92318 0.90987 0.87515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.81 71.98 0.71 -1.06 16 2 C -0.12 -1.64 5.64 30.59 0.17 -1.47 16 3 C 0.09 1.40 2.64 30.62 0.08 1.48 16 4 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 5 C -0.13 -2.30 4.01 30.68 0.12 -2.17 16 6 C -0.10 -1.74 2.62 -11.42 -0.03 -1.77 16 7 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 8 C 0.51 12.38 7.16 87.66 0.63 13.01 16 9 O -0.59 -19.15 15.97 -3.04 -0.05 -19.20 16 10 N -0.72 -15.64 5.18 -463.05 -2.40 -18.03 16 11 C 0.14 3.47 5.06 86.38 0.44 3.91 16 12 C -0.08 -2.22 2.19 -10.76 -0.02 -2.24 16 13 C -0.12 -4.07 5.25 30.67 0.16 -3.91 16 14 C 0.18 8.06 5.31 86.36 0.46 8.52 16 15 N -0.61 -30.12 2.99 -699.14 -2.09 -32.22 16 16 C -0.26 -14.44 9.59 84.03 0.81 -13.63 16 17 H 0.06 3.35 7.89 -2.91 -0.02 3.33 16 18 C -0.05 -2.78 4.91 84.86 0.42 -2.37 16 19 N -0.93 -54.30 11.19 21.65 0.24 -54.06 16 20 Si 0.96 44.76 29.59 68.60 2.03 46.79 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 22 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 23 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 24 C 0.14 5.62 6.52 86.36 0.56 6.19 16 25 C -0.12 -3.63 5.36 30.67 0.16 -3.46 16 26 C -0.15 -2.20 5.29 30.68 0.16 -2.04 16 27 C 0.06 0.82 6.84 72.01 0.49 1.32 16 28 O -0.40 -7.06 9.94 -148.98 -1.48 -8.54 16 29 H 0.05 0.74 7.82 -2.39 -0.02 0.72 16 30 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.05 1.29 8.03 -2.38 -0.02 1.27 16 35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.41 7.15 7.14 -92.71 -0.66 6.49 16 37 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 38 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 39 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 41 H 0.07 2.05 7.15 -2.39 -0.02 2.04 16 42 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 43 H 0.05 2.71 6.04 -2.39 -0.01 2.69 16 44 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 45 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 46 H 0.05 2.04 7.93 -2.39 -0.02 2.02 16 47 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 48 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 49 H 0.10 1.16 7.67 -2.38 -0.02 1.14 16 50 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 51 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 52 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -69.13 398.91 1.78 -67.35 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.21 Total: 17.62 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: 5.32 Total: 0.29 kcal Atomic # 7 Polarization: -100.06 SS G_CDS: -4.25 Total: -104.31 kcal Atomic # 8 Polarization: -26.22 SS G_CDS: -1.53 Total: -27.75 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -69.13 1.78 -67.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330772671.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.349 kcal (2) G-P(sol) polarization free energy of solvation -69.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds