Wall clock time and date at job start Tue Mar 31 2020 14:05:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46777 * 2 1 4 4 H 1.08995 * 109.47212 * 305.00158 * 3 2 1 5 5 C 1.52998 * 109.46827 * 65.00389 * 3 2 1 6 6 C 1.53004 * 109.46827 * 180.02562 * 5 3 2 7 7 C 1.53001 * 109.47156 * 299.99673 * 6 5 3 8 8 C 1.53002 * 109.46755 * 60.00157 * 7 6 5 9 9 C 1.52995 * 109.47126 * 299.99761 * 8 7 6 10 10 H 1.09002 * 109.47322 * 180.02562 * 9 8 7 11 11 O 1.42896 * 109.47347 * 300.00300 * 9 8 7 12 12 C 1.42901 * 113.99959 * 269.99882 * 11 9 8 13 13 C 1.50700 * 109.47218 * 179.97438 * 12 11 9 14 14 O 1.21283 * 120.00217 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00016 * 179.97438 * 13 12 11 16 16 C 1.46958 * 120.59495 * 359.72675 * 15 13 12 17 17 C 1.53809 * 108.40053 * 124.75377 * 16 15 13 18 18 N 1.46966 * 108.57777 * 49.63717 * 17 16 15 19 19 C 1.36938 * 120.59322 * 124.62410 * 18 17 16 20 20 H 1.08000 * 120.00194 * 208.22801 * 19 18 17 21 21 C 1.38814 * 120.00216 * 28.22931 * 19 18 17 22 22 N 1.31616 * 119.99557 * 17.58392 * 21 19 18 23 23 Si 1.86798 * 120.00204 * 197.58314 * 21 19 18 24 24 H 1.48497 * 109.47140 * 89.99649 * 23 21 19 25 25 H 1.48505 * 109.47214 * 209.99995 * 23 21 19 26 26 H 1.48505 * 109.47260 * 329.99684 * 23 21 19 27 27 C 1.46961 * 118.81438 * 304.64732 * 18 17 16 28 28 C 1.46966 * 120.59311 * 180.02562 * 15 13 12 29 29 H 1.09000 * 109.46694 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47127 * 60.00156 * 1 2 3 31 31 H 1.08997 * 109.47289 * 299.99487 * 1 2 3 32 32 H 1.08997 * 109.47567 * 120.00145 * 2 1 3 33 33 H 1.08997 * 109.47289 * 240.00513 * 2 1 3 34 34 H 1.09003 * 109.47294 * 299.99377 * 5 3 2 35 35 H 1.08995 * 109.47413 * 59.99892 * 5 3 2 36 36 H 1.09006 * 109.46746 * 179.97438 * 6 5 3 37 37 H 1.08995 * 109.47223 * 60.00326 * 6 5 3 38 38 H 1.08995 * 109.47138 * 300.00141 * 7 6 5 39 39 H 1.09000 * 109.47058 * 180.02562 * 7 6 5 40 40 H 1.08999 * 109.46443 * 180.02562 * 8 7 6 41 41 H 1.08995 * 109.47311 * 60.00090 * 8 7 6 42 42 H 1.08998 * 109.47546 * 300.00051 * 12 11 9 43 43 H 1.08995 * 109.46959 * 60.00239 * 12 11 9 44 44 H 1.09001 * 109.60912 * 244.53504 * 16 15 13 45 45 H 1.08997 * 109.61140 * 5.04825 * 16 15 13 46 46 H 1.08993 * 109.74657 * 289.84875 * 17 16 15 47 47 H 1.09005 * 109.67500 * 169.38325 * 17 16 15 48 48 H 0.97008 * 119.99927 * 180.02562 * 22 21 19 49 49 H 1.08996 * 109.61024 * 295.48344 * 27 18 17 50 50 H 1.08998 * 109.75240 * 175.05482 * 27 18 17 51 51 H 1.09005 * 109.60870 * 354.95137 * 28 15 13 52 52 H 1.09004 * 109.61384 * 115.28786 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 2.1446 3.5692 1.3071 7 6 3.6694 3.5717 1.1811 8 6 4.0741 2.8877 -0.1263 9 6 3.5648 1.4451 -0.1260 10 1 3.8535 0.9576 -1.0573 11 8 4.1351 0.7387 0.9775 12 6 5.3753 0.0953 0.6773 13 6 5.8833 -0.6142 1.9059 14 8 5.2459 -0.5735 2.9369 15 7 7.0455 -1.2951 1.8587 16 6 7.8248 -1.3590 0.6145 17 6 9.2486 -0.8558 0.9069 18 7 9.7562 -1.5526 2.0972 19 6 10.9366 -2.2451 2.0490 20 1 11.0937 -3.0906 2.7022 21 6 11.9313 -1.8602 1.1605 22 7 11.9034 -0.6600 0.6212 23 14 13.3094 -3.0457 0.7306 24 1 12.9147 -3.8566 -0.4492 25 1 14.5413 -2.2790 0.4146 26 1 13.5678 -3.9439 1.8846 27 6 8.9740 -1.4933 3.3400 28 6 7.5528 -1.9922 3.0488 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5137 0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8934 -0.5137 -0.8900 34 1 0.5489 2.1252 1.3970 35 1 2.0698 1.5875 2.1492 36 1 1.8558 4.0566 2.2384 37 1 1.7095 4.1080 0.4655 38 1 4.1044 3.0330 2.0228 39 1 4.0323 4.5996 1.1813 40 1 5.1604 2.8892 -0.2159 41 1 3.6391 3.4265 -0.9681 42 1 5.2248 -0.6278 -0.1242 43 1 6.1045 0.8413 0.3615 44 1 7.8637 -2.3890 0.2597 45 1 7.3597 -0.7264 -0.1415 46 1 9.2287 0.2180 1.0924 47 1 9.8950 -1.0681 0.0553 48 1 12.5983 -0.3911 0.0000 49 1 8.9346 -0.4648 3.6987 50 1 9.4363 -2.1271 4.0967 51 1 6.9079 -1.7778 3.9011 52 1 7.5699 -3.0664 2.8642 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330963248.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:33 Heat of formation + Delta-G solvation = -91.697552 kcal Electronic energy + Delta-G solvation = -29170.972837 eV Core-core repulsion = 25362.716466 eV Total energy + Delta-G solvation = -3808.256371 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.23854 -40.37754 -38.46976 -37.02355 -35.62390 -34.78251 -33.35015 -31.98035 -31.11017 -30.02039 -29.23668 -27.88668 -25.37775 -24.75400 -24.39196 -23.27509 -22.30056 -21.54085 -20.57201 -20.23620 -18.82829 -17.83628 -17.58280 -17.16754 -16.79803 -16.38855 -16.36291 -15.94025 -15.48370 -15.41430 -15.25055 -15.14534 -14.99322 -14.62969 -14.44378 -14.16580 -13.83635 -13.63408 -13.47762 -13.33876 -13.20483 -12.95501 -12.72832 -12.67266 -12.50454 -12.37834 -12.23793 -12.19123 -12.03190 -11.92656 -11.90058 -11.68108 -11.55565 -11.40507 -11.27002 -10.77630 -10.74284 -10.57932 -10.31795 -9.85759 -8.67330 -7.89537 -5.37608 1.49083 1.51023 1.56514 1.59411 1.77849 2.50747 2.88231 3.24991 3.54281 3.57858 3.75015 3.82479 3.91957 4.10247 4.19265 4.21557 4.23761 4.25254 4.26970 4.35498 4.37371 4.49109 4.53823 4.55757 4.59898 4.62992 4.64595 4.72297 4.79698 4.80132 4.88444 4.92233 4.97310 5.04853 5.08054 5.18620 5.20727 5.27268 5.31794 5.34804 5.37492 5.47519 5.51051 5.54716 5.59261 5.64745 5.66155 6.22619 6.34871 6.47103 7.10217 7.15123 7.77351 8.31112 9.15728 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.022071 B = 0.002673 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.320893 B =10473.207958 C =10740.585702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C -0.075 4.075 4 H 0.102 0.898 5 C -0.110 4.110 6 C -0.114 4.114 7 C -0.117 4.117 8 C -0.140 4.140 9 C 0.084 3.916 10 H 0.078 0.922 11 O -0.370 6.370 12 C 0.051 3.949 13 C 0.508 3.492 14 O -0.577 6.577 15 N -0.601 5.601 16 C 0.094 3.906 17 C 0.162 3.838 18 N -0.609 5.609 19 C -0.266 4.266 20 H 0.069 0.931 21 C -0.045 4.045 22 N -0.932 5.932 23 Si 0.969 3.031 24 H -0.281 1.281 25 H -0.297 1.297 26 H -0.272 1.272 27 C 0.133 3.867 28 C 0.107 3.893 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.042 0.958 33 H 0.064 0.936 34 H 0.072 0.928 35 H 0.039 0.961 36 H 0.057 0.943 37 H 0.077 0.923 38 H 0.038 0.962 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.107 0.893 46 H 0.000 1.000 47 H 0.078 0.922 48 H 0.252 0.748 49 H 0.007 0.993 50 H 0.073 0.927 51 H 0.082 0.918 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.730 4.879 -6.869 22.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.094 4.094 4 H 0.120 0.880 5 C -0.148 4.148 6 C -0.151 4.151 7 C -0.155 4.155 8 C -0.178 4.178 9 C 0.026 3.974 10 H 0.096 0.904 11 O -0.289 6.289 12 C -0.028 4.028 13 C 0.297 3.703 14 O -0.456 6.456 15 N -0.335 5.335 16 C -0.029 4.029 17 C 0.036 3.964 18 N -0.332 5.332 19 C -0.396 4.396 20 H 0.086 0.914 21 C -0.240 4.240 22 N -0.578 5.578 23 Si 0.797 3.203 24 H -0.207 1.207 25 H -0.224 1.224 26 H -0.197 1.197 27 C 0.007 3.993 28 C -0.017 4.017 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.056 0.944 39 H 0.083 0.917 40 H 0.077 0.923 41 H 0.112 0.888 42 H 0.122 0.878 43 H 0.107 0.893 44 H 0.093 0.907 45 H 0.125 0.875 46 H 0.018 0.982 47 H 0.096 0.904 48 H 0.062 0.938 49 H 0.025 0.975 50 H 0.091 0.909 51 H 0.100 0.900 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -21.026 4.958 -6.234 22.484 hybrid contribution 1.516 -0.376 -0.015 1.562 sum -19.510 4.581 -6.249 20.993 Atomic orbital electron populations 1.21790 0.94915 1.01729 1.02209 1.21485 0.96532 0.96058 1.01452 1.21293 0.92278 0.96660 0.99122 0.88004 1.21517 1.00492 0.95541 0.97223 1.21504 0.94967 0.96558 1.02083 1.21409 0.96671 0.99850 0.97541 1.22044 1.00965 0.95900 0.98850 1.22449 0.94010 0.91845 0.89056 0.90363 1.88044 1.34987 1.68871 1.37023 1.22253 0.88586 0.97541 0.94451 1.20866 0.80308 0.78713 0.90371 1.90640 1.58025 1.62891 1.34088 1.48083 1.21142 1.50985 1.13249 1.22619 0.92725 1.02660 0.84936 1.21121 0.91512 0.92651 0.91165 1.44263 1.22190 1.60517 1.06260 1.19516 0.92121 1.07048 1.20874 0.91380 1.25780 0.99509 0.97023 1.01730 1.70159 1.35728 1.18107 1.33768 0.85250 0.78284 0.78354 0.78403 1.20724 1.22386 1.19690 1.21344 0.90904 0.97598 0.89491 1.22007 0.95311 0.96292 0.88090 0.92897 0.91552 0.92750 0.93867 0.91689 0.90985 0.94179 0.92394 0.90432 0.94359 0.91744 0.92333 0.88841 0.87841 0.89313 0.90689 0.87495 0.98222 0.90408 0.93842 0.97534 0.90877 0.89952 0.90839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.67 71.98 0.70 -1.44 16 2 C -0.12 -2.08 5.19 30.60 0.16 -1.93 16 3 C -0.08 -1.26 2.02 -10.79 -0.02 -1.28 16 4 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 5 C -0.11 -2.11 4.81 30.60 0.15 -1.96 16 6 C -0.11 -1.97 5.92 30.60 0.18 -1.79 16 7 C -0.12 -2.40 5.78 30.60 0.18 -2.23 16 8 C -0.14 -2.49 5.63 30.59 0.17 -2.32 16 9 C 0.08 1.59 2.35 30.59 0.07 1.66 16 10 H 0.08 1.20 7.78 -2.39 -0.02 1.18 16 11 O -0.37 -10.06 7.60 -129.94 -0.99 -11.05 16 12 C 0.05 1.33 4.57 71.24 0.33 1.65 16 13 C 0.51 17.82 7.77 87.66 0.68 18.50 16 14 O -0.58 -24.63 15.90 16.00 0.25 -24.37 16 15 N -0.60 -21.16 2.94 -817.08 -2.40 -23.56 16 16 C 0.09 3.12 6.53 86.57 0.57 3.68 16 17 C 0.16 7.20 5.54 86.56 0.48 7.68 16 18 N -0.61 -29.56 2.97 -697.28 -2.07 -31.63 16 19 C -0.27 -14.01 9.58 84.03 0.80 -13.21 16 20 H 0.07 3.51 7.89 -2.91 -0.02 3.49 16 21 C -0.04 -2.37 4.90 84.86 0.42 -1.96 16 22 N -0.93 -52.42 11.20 21.65 0.24 -52.18 16 23 Si 0.97 42.90 29.59 68.60 2.03 44.93 16 24 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 25 H -0.30 -13.36 7.11 99.48 0.71 -12.66 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 27 C 0.13 5.63 6.67 86.43 0.58 6.20 16 28 C 0.11 3.93 6.59 86.43 0.57 4.50 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.05 0.80 6.56 -2.39 -0.02 0.78 16 32 H 0.04 1.03 7.84 -2.39 -0.02 1.01 16 33 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 34 H 0.07 1.17 6.57 -2.39 -0.02 1.16 16 35 H 0.04 1.05 7.68 -2.39 -0.02 1.03 16 36 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.04 1.04 7.68 -2.39 -0.02 1.02 16 39 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 40 H 0.06 1.11 7.87 -2.39 -0.02 1.09 16 41 H 0.09 1.22 8.14 -2.39 -0.02 1.21 16 42 H 0.10 2.07 7.84 -2.39 -0.02 2.05 16 43 H 0.09 2.10 7.46 -2.39 -0.02 2.09 16 44 H 0.07 2.40 8.14 -2.39 -0.02 2.39 16 45 H 0.11 2.71 5.91 -2.39 -0.01 2.70 16 46 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 47 H 0.08 3.83 5.98 -2.38 -0.01 3.82 16 48 H 0.25 13.74 8.31 -92.70 -0.77 12.96 16 49 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 50 H 0.07 2.94 7.94 -2.39 -0.02 2.92 16 51 H 0.08 3.03 6.99 -2.38 -0.02 3.02 16 52 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -67.42 393.06 3.94 -63.48 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: 0.87 Total: 18.60 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: 6.00 Total: 15.78 kcal Atomic # 7 Polarization: -103.14 SS G_CDS: -4.23 Total: -107.36 kcal Atomic # 8 Polarization: -34.69 SS G_CDS: -0.73 Total: -35.42 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -67.42 3.94 -63.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330963248.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.220 kcal (2) G-P(sol) polarization free energy of solvation -67.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds