Wall clock time and date at job start Tue Mar 31 2020 16:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47140 * 2 1 4 4 H 1.08998 * 109.47229 * 57.10393 * 3 2 1 5 5 O 1.42896 * 109.47259 * 297.09614 * 3 2 1 6 6 C 1.42905 * 113.99704 * 90.00012 * 5 3 2 7 7 C 1.52998 * 109.47128 * 210.00189 * 6 5 3 8 8 C 1.52997 * 109.47034 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47170 * 59.99855 * 8 7 6 10 10 C 1.52998 * 109.47260 * 300.00006 * 9 8 7 11 11 C 1.52997 * 109.47034 * 59.99911 * 10 9 8 12 12 C 1.50701 * 109.47129 * 177.09837 * 3 2 1 13 13 O 1.21284 * 119.99905 * 108.50936 * 12 3 2 14 14 N 1.34783 * 120.00033 * 288.51120 * 12 3 2 15 15 C 1.46963 * 120.59367 * 4.73589 * 14 12 3 16 16 C 1.53813 * 108.39683 * 124.75539 * 15 14 12 17 17 N 1.46967 * 108.57958 * 49.64186 * 16 15 14 18 18 C 1.36933 * 120.59658 * 124.66574 * 17 16 15 19 19 H 1.07997 * 119.99658 * 211.76244 * 18 17 16 20 20 C 1.38815 * 119.99778 * 31.76214 * 18 17 16 21 21 N 1.31612 * 120.00364 * 10.83428 * 20 18 17 22 22 Si 1.86807 * 119.99598 * 190.83357 * 20 18 17 23 23 H 1.48497 * 109.47304 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46933 * 120.00001 * 22 20 18 25 25 H 1.48495 * 109.47052 * 239.99964 * 22 20 18 26 26 C 1.46964 * 118.80703 * 304.64079 * 17 16 15 27 27 C 1.46964 * 120.59448 * 185.01042 * 14 12 3 28 28 H 1.09001 * 109.46764 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46712 * 299.99678 * 1 2 3 30 30 H 1.08996 * 109.46958 * 59.99714 * 1 2 3 31 31 H 1.09000 * 109.47422 * 240.00121 * 2 1 3 32 32 H 1.09006 * 109.47442 * 120.00070 * 2 1 3 33 33 H 1.09000 * 109.46778 * 330.00149 * 6 5 3 34 34 H 1.08995 * 109.47513 * 59.99906 * 7 6 5 35 35 H 1.09007 * 109.46989 * 299.99913 * 7 6 5 36 36 H 1.08996 * 109.47123 * 300.00230 * 8 7 6 37 37 H 1.09006 * 109.47238 * 179.97438 * 8 7 6 38 38 H 1.09000 * 109.47246 * 60.00334 * 9 8 7 39 39 H 1.09001 * 109.47477 * 179.97438 * 9 8 7 40 40 H 1.09005 * 109.47356 * 180.02562 * 10 9 8 41 41 H 1.09007 * 109.46989 * 300.00074 * 10 9 8 42 42 H 1.09006 * 109.46948 * 179.97438 * 11 10 9 43 43 H 1.09002 * 109.47285 * 60.00657 * 11 10 9 44 44 H 1.08997 * 109.60579 * 244.54225 * 15 14 12 45 45 H 1.09001 * 109.61001 * 5.05248 * 15 14 12 46 46 H 1.08996 * 109.74267 * 289.84849 * 16 15 14 47 47 H 1.09005 * 109.53160 * 169.29991 * 16 15 14 48 48 H 0.96998 * 120.00170 * 180.02562 * 21 20 18 49 49 H 1.08996 * 109.61276 * 295.48381 * 26 17 16 50 50 H 1.09003 * 109.75065 * 175.05818 * 26 17 16 51 51 H 1.09005 * 109.60708 * 354.95084 * 27 14 12 52 52 H 1.09003 * 109.60634 * 115.45862 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6349 1.9711 0.8629 5 8 1.6202 2.0962 -1.1994 6 6 0.3537 2.7494 -1.0925 7 6 -0.3370 2.7492 -2.4577 8 6 -1.6927 3.4492 -2.3434 9 6 -1.4842 4.8915 -1.8775 10 6 -0.7935 4.8917 -0.5123 11 6 0.5622 4.1918 -0.6266 12 6 3.5453 1.4431 0.0719 13 8 4.1987 1.7599 -0.8995 14 7 4.1655 1.0915 1.2158 15 6 3.3920 0.6064 2.3674 16 6 3.9457 -0.7681 2.7797 17 7 5.4070 -0.6674 2.8998 18 6 6.0370 -1.0246 4.0619 19 1 6.9423 -0.5183 4.3630 20 6 5.5122 -2.0374 4.8530 21 7 4.5407 -2.7962 4.3919 22 14 6.1850 -2.3234 6.5721 23 1 7.2651 -1.3431 6.8504 24 1 5.0942 -2.1526 7.5652 25 1 6.7299 -3.7014 6.6674 26 6 6.1799 -0.1770 1.7501 27 6 5.6267 1.1921 1.3358 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 -0.2682 2.2203 -0.3705 34 1 -0.4851 1.7217 -2.7898 35 1 0.2850 3.2784 -3.1797 36 1 -2.3148 2.9205 -1.6213 37 1 -2.1846 3.4495 -3.3161 38 1 -0.8621 5.4203 -2.5996 39 1 -2.4500 5.3904 -1.7965 40 1 -0.6454 5.9193 -0.1801 41 1 -1.4157 4.3629 0.2098 42 1 1.0545 4.1923 0.3460 43 1 1.1844 4.7206 -1.3486 44 1 3.4911 1.3074 3.1961 45 1 2.3424 0.5111 2.0891 46 1 3.6911 -1.5098 2.0227 47 1 3.5191 -1.0599 3.7394 48 1 4.1737 -3.5036 4.9448 49 1 6.0844 -0.8766 0.9198 50 1 7.2297 -0.0789 2.0268 51 1 6.0534 1.4839 0.3761 52 1 5.8813 1.9339 2.0928 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331009139.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:05 Heat of formation + Delta-G solvation = -70.528143 kcal Electronic energy + Delta-G solvation = -29645.746109 eV Core-core repulsion = 25838.407712 eV Total energy + Delta-G solvation = -3807.338396 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.25819 -39.02252 -37.02221 -36.38344 -34.05073 -33.11942 -31.31977 -31.02854 -30.20667 -29.98773 -27.68902 -26.29974 -23.68759 -22.87705 -22.82569 -22.33694 -21.83308 -20.62926 -20.02590 -18.67897 -17.47399 -16.88476 -16.10359 -15.82551 -15.44715 -15.09808 -14.73989 -14.59139 -14.49255 -14.24912 -13.94414 -13.65040 -13.51035 -13.42466 -13.23674 -13.14339 -12.77261 -12.50297 -12.43328 -12.19402 -11.88581 -11.78121 -11.61952 -11.39936 -11.31766 -11.19506 -10.92990 -10.85255 -10.77785 -10.73735 -10.68058 -10.50281 -10.25362 -10.24104 -10.06045 -9.85859 -9.51549 -9.08228 -8.62359 -8.23951 -6.68845 -5.88421 -3.38241 2.96405 3.05456 3.30639 3.38999 3.40828 3.90208 4.40701 4.48328 4.50395 4.70232 4.72134 4.87538 4.91933 5.01540 5.04189 5.10821 5.24367 5.25627 5.25991 5.27491 5.31492 5.36744 5.44740 5.56325 5.65263 5.73072 5.74492 5.77846 5.83639 5.87614 5.93468 5.94444 5.97264 5.98512 6.03071 6.07802 6.14396 6.18826 6.20101 6.29167 6.33185 6.42962 6.78351 6.91236 7.16143 7.25569 7.44756 7.69479 7.90730 8.35715 8.59112 9.10259 9.70646 10.29480 11.18946 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.022409 B = 0.002902 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.202292 B = 9645.695811 C =10006.825738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.151 4.151 3 C 0.079 3.921 4 H 0.080 0.920 5 O -0.349 6.349 6 C 0.079 3.921 7 C -0.115 4.115 8 C -0.116 4.116 9 C -0.122 4.122 10 C -0.117 4.117 11 C -0.144 4.144 12 C 0.512 3.488 13 O -0.538 6.538 14 N -0.595 5.595 15 C 0.069 3.931 16 C 0.160 3.840 17 N -0.591 5.591 18 C -0.254 4.254 19 H 0.067 0.933 20 C 0.005 3.995 21 N -0.904 5.904 22 Si 0.906 3.094 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.289 1.289 26 C 0.132 3.868 27 C 0.097 3.903 28 H 0.062 0.938 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.075 0.925 46 H 0.025 0.975 47 H 0.102 0.898 48 H 0.255 0.745 49 H 0.024 0.976 50 H 0.066 0.934 51 H 0.082 0.918 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.781 11.687 -8.926 20.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.189 4.189 3 C 0.018 3.982 4 H 0.097 0.903 5 O -0.267 6.267 6 C 0.022 3.978 7 C -0.153 4.153 8 C -0.154 4.154 9 C -0.160 4.160 10 C -0.154 4.154 11 C -0.182 4.182 12 C 0.299 3.701 13 O -0.416 6.416 14 N -0.329 5.329 15 C -0.055 4.055 16 C 0.033 3.967 17 N -0.314 5.314 18 C -0.384 4.384 19 H 0.085 0.915 20 C -0.194 4.194 21 N -0.549 5.549 22 Si 0.736 3.264 23 H -0.202 1.202 24 H -0.215 1.215 25 H -0.216 1.216 26 C 0.005 3.995 27 C -0.027 4.027 28 H 0.081 0.919 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.043 0.957 47 H 0.119 0.881 48 H 0.065 0.935 49 H 0.042 0.958 50 H 0.085 0.915 51 H 0.100 0.900 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.376 11.708 -9.516 20.163 hybrid contribution 0.176 -0.278 1.266 1.308 sum -13.199 11.430 -8.250 19.312 Atomic orbital electron populations 1.21938 0.95206 1.02452 1.01731 1.22210 0.96789 0.95267 1.04648 1.21908 0.92637 0.94607 0.89041 0.90259 1.88059 1.36083 1.69948 1.32600 1.22395 0.85242 0.92176 0.98021 1.21570 0.95810 1.01448 0.96457 1.21508 0.96571 0.95776 1.01515 1.21575 1.00417 0.96793 0.97172 1.21494 0.96031 1.00546 0.97345 1.22080 0.97595 0.96508 1.01975 1.20283 0.89281 0.77640 0.82945 1.90648 1.66885 1.48682 1.35346 1.47994 1.08050 1.63824 1.13075 1.23004 0.94718 1.00294 0.87455 1.21267 0.84464 0.89271 1.01685 1.43939 1.01134 1.75971 1.10351 1.19245 1.09150 1.12711 0.97264 0.91548 1.25192 0.99092 0.95414 0.99687 1.69947 1.28645 1.20269 1.36013 0.86164 0.78413 0.77753 0.84087 1.20193 1.21510 1.21586 1.21306 0.95558 0.91827 0.90841 1.22202 0.79194 0.99953 1.01346 0.91938 0.92674 0.91986 0.90472 0.88992 0.91122 0.91220 0.91030 0.91850 0.91494 0.91814 0.91974 0.91758 0.91947 0.91953 0.91054 0.91820 0.90648 0.95735 0.88054 0.93496 0.95795 0.91518 0.89993 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 8.52 37.16 0.32 -1.33 16 2 C -0.15 -2.05 5.22 -26.73 -0.14 -2.19 16 3 C 0.08 1.17 1.82 -27.88 -0.05 1.12 16 4 H 0.08 1.03 7.00 -51.93 -0.36 0.67 16 5 O -0.35 -5.24 9.09 -54.88 -0.50 -5.74 16 6 C 0.08 0.88 1.34 -26.73 -0.04 0.85 16 7 C -0.12 -1.11 5.42 -26.73 -0.14 -1.26 16 8 C -0.12 -0.86 5.92 -26.73 -0.16 -1.02 16 9 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 10 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 11 C -0.14 -1.51 5.53 -26.73 -0.15 -1.65 16 12 C 0.51 9.49 7.05 -10.98 -0.08 9.42 16 13 O -0.54 -11.80 15.95 -14.09 -0.22 -12.02 16 14 N -0.60 -10.97 2.94 -172.21 -0.51 -11.48 16 15 C 0.07 1.22 5.75 -3.37 -0.02 1.20 16 16 C 0.16 3.54 5.38 -3.36 -0.02 3.52 16 17 N -0.59 -14.26 2.96 -171.77 -0.51 -14.77 16 18 C -0.25 -6.67 9.58 -15.06 -0.14 -6.82 16 19 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 20 C 0.00 0.13 5.04 -17.43 -0.09 0.04 16 21 N -0.90 -24.96 11.05 55.49 0.61 -24.35 16 22 Si 0.91 20.86 29.57 -169.99 -5.03 15.83 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 26 C 0.13 2.78 6.67 -3.60 -0.02 2.75 16 27 C 0.10 1.82 6.60 -3.60 -0.02 1.80 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.52 7.91 -51.93 -0.41 0.11 16 30 H 0.06 0.63 5.43 -51.93 -0.28 0.34 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.09 1.32 5.37 -51.93 -0.28 1.04 16 33 H 0.07 0.71 5.22 -51.93 -0.27 0.44 16 34 H 0.07 0.67 7.73 -51.93 -0.40 0.27 16 35 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 42 H 0.06 0.68 7.97 -51.93 -0.41 0.27 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.08 1.12 4.22 -51.93 -0.22 0.90 16 46 H 0.02 0.58 7.97 -51.93 -0.41 0.17 16 47 H 0.10 2.47 6.05 -51.93 -0.31 2.16 16 48 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 49 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.07 1.34 7.94 -51.93 -0.41 0.93 16 51 H 0.08 1.53 6.99 -51.93 -0.36 1.17 16 52 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 LS Contribution 386.37 15.07 5.82 5.82 Total: -1.00 -30.76 386.37 -10.59 -41.35 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -9.19 Total: 1.08 kcal Atomic # 6 Polarization: 5.35 SS G_CDS: -1.07 Total: 4.27 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: -0.40 Total: -50.59 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.72 Total: -17.77 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.03 Total: 15.83 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.76 -10.59 -41.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331009139.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.180 kcal (2) G-P(sol) polarization free energy of solvation -30.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds