Wall clock time and date at job start Tue Mar 31 2020 16:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47140 * 2 1 4 4 H 1.08998 * 109.47229 * 57.10393 * 3 2 1 5 5 O 1.42896 * 109.47259 * 297.09614 * 3 2 1 6 6 C 1.42905 * 113.99704 * 90.00012 * 5 3 2 7 7 C 1.52998 * 109.47128 * 210.00189 * 6 5 3 8 8 C 1.52997 * 109.47034 * 180.02562 * 7 6 5 9 9 C 1.52999 * 109.47170 * 59.99855 * 8 7 6 10 10 C 1.52998 * 109.47260 * 300.00006 * 9 8 7 11 11 C 1.52997 * 109.47034 * 59.99911 * 10 9 8 12 12 C 1.50701 * 109.47129 * 177.09837 * 3 2 1 13 13 O 1.21284 * 119.99905 * 108.50936 * 12 3 2 14 14 N 1.34783 * 120.00033 * 288.51120 * 12 3 2 15 15 C 1.46963 * 120.59367 * 4.73589 * 14 12 3 16 16 C 1.53813 * 108.39683 * 124.75539 * 15 14 12 17 17 N 1.46967 * 108.57958 * 49.64186 * 16 15 14 18 18 C 1.36933 * 120.59658 * 124.66574 * 17 16 15 19 19 H 1.07997 * 119.99658 * 211.76244 * 18 17 16 20 20 C 1.38815 * 119.99778 * 31.76214 * 18 17 16 21 21 N 1.31612 * 120.00364 * 10.83428 * 20 18 17 22 22 Si 1.86807 * 119.99598 * 190.83357 * 20 18 17 23 23 H 1.48497 * 109.47304 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46933 * 120.00001 * 22 20 18 25 25 H 1.48495 * 109.47052 * 239.99964 * 22 20 18 26 26 C 1.46964 * 118.80703 * 304.64079 * 17 16 15 27 27 C 1.46964 * 120.59448 * 185.01042 * 14 12 3 28 28 H 1.09001 * 109.46764 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46712 * 299.99678 * 1 2 3 30 30 H 1.08996 * 109.46958 * 59.99714 * 1 2 3 31 31 H 1.09000 * 109.47422 * 240.00121 * 2 1 3 32 32 H 1.09006 * 109.47442 * 120.00070 * 2 1 3 33 33 H 1.09000 * 109.46778 * 330.00149 * 6 5 3 34 34 H 1.08995 * 109.47513 * 59.99906 * 7 6 5 35 35 H 1.09007 * 109.46989 * 299.99913 * 7 6 5 36 36 H 1.08996 * 109.47123 * 300.00230 * 8 7 6 37 37 H 1.09006 * 109.47238 * 179.97438 * 8 7 6 38 38 H 1.09000 * 109.47246 * 60.00334 * 9 8 7 39 39 H 1.09001 * 109.47477 * 179.97438 * 9 8 7 40 40 H 1.09005 * 109.47356 * 180.02562 * 10 9 8 41 41 H 1.09007 * 109.46989 * 300.00074 * 10 9 8 42 42 H 1.09006 * 109.46948 * 179.97438 * 11 10 9 43 43 H 1.09002 * 109.47285 * 60.00657 * 11 10 9 44 44 H 1.08997 * 109.60579 * 244.54225 * 15 14 12 45 45 H 1.09001 * 109.61001 * 5.05248 * 15 14 12 46 46 H 1.08996 * 109.74267 * 289.84849 * 16 15 14 47 47 H 1.09005 * 109.53160 * 169.29991 * 16 15 14 48 48 H 0.96998 * 120.00170 * 180.02562 * 21 20 18 49 49 H 1.08996 * 109.61276 * 295.48381 * 26 17 16 50 50 H 1.09003 * 109.75065 * 175.05818 * 26 17 16 51 51 H 1.09005 * 109.60708 * 354.95084 * 27 14 12 52 52 H 1.09003 * 109.60634 * 115.45862 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6349 1.9711 0.8629 5 8 1.6202 2.0962 -1.1994 6 6 0.3537 2.7494 -1.0925 7 6 -0.3370 2.7492 -2.4577 8 6 -1.6927 3.4492 -2.3434 9 6 -1.4842 4.8915 -1.8775 10 6 -0.7935 4.8917 -0.5123 11 6 0.5622 4.1918 -0.6266 12 6 3.5453 1.4431 0.0719 13 8 4.1987 1.7599 -0.8995 14 7 4.1655 1.0915 1.2158 15 6 3.3920 0.6064 2.3674 16 6 3.9457 -0.7681 2.7797 17 7 5.4070 -0.6674 2.8998 18 6 6.0370 -1.0246 4.0619 19 1 6.9423 -0.5183 4.3630 20 6 5.5122 -2.0374 4.8530 21 7 4.5407 -2.7962 4.3919 22 14 6.1850 -2.3234 6.5721 23 1 7.2651 -1.3431 6.8504 24 1 5.0942 -2.1526 7.5652 25 1 6.7299 -3.7014 6.6674 26 6 6.1799 -0.1770 1.7501 27 6 5.6267 1.1921 1.3358 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 -0.2682 2.2203 -0.3705 34 1 -0.4851 1.7217 -2.7898 35 1 0.2850 3.2784 -3.1797 36 1 -2.3148 2.9205 -1.6213 37 1 -2.1846 3.4495 -3.3161 38 1 -0.8621 5.4203 -2.5996 39 1 -2.4500 5.3904 -1.7965 40 1 -0.6454 5.9193 -0.1801 41 1 -1.4157 4.3629 0.2098 42 1 1.0545 4.1923 0.3460 43 1 1.1844 4.7206 -1.3486 44 1 3.4911 1.3074 3.1961 45 1 2.3424 0.5111 2.0891 46 1 3.6911 -1.5098 2.0227 47 1 3.5191 -1.0599 3.7394 48 1 4.1737 -3.5036 4.9448 49 1 6.0844 -0.8766 0.9198 50 1 7.2297 -0.0789 2.0268 51 1 6.0534 1.4839 0.3761 52 1 5.8813 1.9339 2.0928 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331009139.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:02:04 Heat of formation + Delta-G solvation = -86.484648 kcal Electronic energy + Delta-G solvation = -29646.438035 eV Core-core repulsion = 25838.407712 eV Total energy + Delta-G solvation = -3808.030322 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.56516 -40.10784 -38.47857 -37.54651 -35.73122 -34.33566 -33.06222 -31.86629 -31.71162 -30.83737 -29.16983 -27.72968 -25.44648 -24.43654 -23.57302 -23.14507 -22.98301 -22.17028 -20.83121 -20.22022 -18.83933 -18.34152 -17.56803 -17.11015 -16.69152 -16.59903 -16.21491 -15.77055 -15.53553 -15.32479 -15.23954 -15.11719 -14.88021 -14.78563 -14.65903 -14.06417 -13.87325 -13.57581 -13.36263 -13.28378 -13.15066 -13.10207 -13.00797 -12.75009 -12.61216 -12.47428 -12.22038 -12.17221 -12.03359 -12.00758 -11.89724 -11.72599 -11.64955 -11.46420 -11.44222 -11.04927 -10.74015 -10.59464 -10.29123 -9.85671 -8.61782 -7.88117 -5.42009 1.47359 1.50518 1.51633 1.60593 1.74884 2.50096 2.76308 3.27875 3.40597 3.57790 3.74926 3.76839 3.81680 3.90509 4.05090 4.18875 4.21167 4.23854 4.28026 4.30010 4.34583 4.38183 4.45209 4.54307 4.56894 4.58927 4.61979 4.67456 4.70789 4.76441 4.79812 4.93539 5.01270 5.02849 5.09704 5.11480 5.14607 5.21806 5.23953 5.24807 5.30927 5.34688 5.42098 5.51169 5.53486 5.61607 5.65179 6.18820 6.38207 6.44451 7.10603 7.12596 7.77067 8.32598 9.16727 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.022409 B = 0.002902 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.202292 B = 9645.695811 C =10006.825738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.147 4.147 3 C 0.087 3.913 4 H 0.103 0.897 5 O -0.374 6.374 6 C 0.074 3.926 7 C -0.115 4.115 8 C -0.111 4.111 9 C -0.122 4.122 10 C -0.113 4.113 11 C -0.144 4.144 12 C 0.507 3.493 13 O -0.577 6.577 14 N -0.598 5.598 15 C 0.085 3.915 16 C 0.167 3.833 17 N -0.608 5.608 18 C -0.265 4.265 19 H 0.067 0.933 20 C -0.043 4.043 21 N -0.932 5.932 22 Si 0.970 3.030 23 H -0.268 1.268 24 H -0.286 1.286 25 H -0.295 1.295 26 C 0.133 3.867 27 C 0.105 3.895 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.056 0.944 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.052 0.948 44 H 0.074 0.926 45 H 0.108 0.892 46 H 0.001 0.999 47 H 0.079 0.921 48 H 0.253 0.747 49 H 0.006 0.994 50 H 0.074 0.926 51 H 0.082 0.918 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.806 12.941 -8.153 21.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.185 4.185 3 C 0.026 3.974 4 H 0.121 0.879 5 O -0.293 6.293 6 C 0.017 3.983 7 C -0.152 4.152 8 C -0.149 4.149 9 C -0.159 4.159 10 C -0.150 4.150 11 C -0.182 4.182 12 C 0.295 3.705 13 O -0.457 6.457 14 N -0.331 5.331 15 C -0.038 4.038 16 C 0.040 3.960 17 N -0.332 5.332 18 C -0.395 4.395 19 H 0.085 0.915 20 C -0.239 4.239 21 N -0.578 5.578 22 Si 0.798 3.202 23 H -0.193 1.193 24 H -0.212 1.212 25 H -0.222 1.222 26 C 0.007 3.993 27 C -0.019 4.019 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.106 0.894 34 H 0.087 0.913 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.096 0.904 38 H 0.075 0.925 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.092 0.908 45 H 0.126 0.874 46 H 0.019 0.981 47 H 0.097 0.903 48 H 0.062 0.938 49 H 0.024 0.976 50 H 0.092 0.908 51 H 0.100 0.900 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.411 12.984 -8.747 21.968 hybrid contribution 0.861 -0.680 0.942 1.446 sum -14.550 12.304 -7.806 20.592 Atomic orbital electron populations 1.21925 0.92439 1.03471 1.02963 1.22160 0.99152 0.94006 1.03199 1.21860 0.89753 0.95681 0.90122 0.87897 1.88048 1.38124 1.70367 1.32772 1.22669 0.83983 0.92313 0.99355 1.21594 0.96783 1.01571 0.95271 1.21503 0.95154 0.95605 1.02593 1.21588 1.01055 0.96819 0.96485 1.21490 0.94650 1.00703 0.98171 1.22077 0.98867 0.96256 1.00961 1.21040 0.91028 0.76368 0.82015 1.90622 1.68149 1.50394 1.36536 1.48075 1.07958 1.63648 1.13424 1.22827 0.95975 0.97508 0.87514 1.21088 0.83744 0.91307 0.99822 1.44204 1.02142 1.76188 1.10650 1.19523 1.09275 1.12670 0.98042 0.91493 1.25895 0.99593 0.95355 1.03025 1.70096 1.29781 1.20763 1.37125 0.85169 0.77899 0.77165 0.79935 1.19277 1.21238 1.22212 1.21337 0.95997 0.92585 0.89416 1.22039 0.79743 0.98532 1.01587 0.91127 0.90750 0.91367 0.92418 0.89966 0.89407 0.91297 0.92576 0.90642 0.90381 0.92534 0.90246 0.91171 0.90754 0.92586 0.92883 0.90817 0.87427 0.98084 0.90260 0.93813 0.97578 0.90802 0.89981 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.52 71.98 0.61 -2.18 16 2 C -0.15 -3.83 5.22 30.59 0.16 -3.67 16 3 C 0.09 2.47 1.82 29.85 0.05 2.52 16 4 H 0.10 2.41 7.00 -2.39 -0.02 2.39 16 5 O -0.37 -10.98 9.09 -130.20 -1.18 -12.16 16 6 C 0.07 1.51 1.34 30.59 0.04 1.55 16 7 C -0.11 -2.05 5.42 30.59 0.17 -1.88 16 8 C -0.11 -1.35 5.92 30.59 0.18 -1.17 16 9 C -0.12 -1.47 5.92 30.59 0.18 -1.29 16 10 C -0.11 -1.53 5.92 30.59 0.18 -1.35 16 11 C -0.14 -2.81 5.53 30.59 0.17 -2.64 16 12 C 0.51 18.66 7.05 87.66 0.62 19.28 16 13 O -0.58 -25.64 15.95 15.74 0.25 -25.39 16 14 N -0.60 -21.70 2.94 -817.14 -2.40 -24.11 16 15 C 0.09 2.91 5.75 86.57 0.50 3.40 16 16 C 0.17 7.45 5.38 86.56 0.47 7.92 16 17 N -0.61 -29.61 2.96 -697.35 -2.06 -31.67 16 18 C -0.27 -13.95 9.58 84.03 0.80 -13.15 16 19 H 0.07 3.45 7.85 -2.91 -0.02 3.43 16 20 C -0.04 -2.27 5.04 84.86 0.43 -1.84 16 21 N -0.93 -52.10 11.05 21.65 0.24 -51.86 16 22 Si 0.97 42.85 29.57 68.60 2.03 44.87 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 24 H -0.29 -12.43 7.11 99.48 0.71 -11.72 16 25 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 26 C 0.13 5.68 6.67 86.41 0.58 6.26 16 27 C 0.10 3.92 6.60 86.41 0.57 4.49 16 28 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.07 1.11 7.91 -2.39 -0.02 1.09 16 30 H 0.07 1.19 5.43 -2.39 -0.01 1.18 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.08 2.29 5.37 -2.38 -0.01 2.28 16 33 H 0.09 1.49 5.22 -2.39 -0.01 1.48 16 34 H 0.07 1.23 7.73 -2.39 -0.02 1.21 16 35 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 39 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 41 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 42 H 0.06 1.14 7.97 -2.38 -0.02 1.12 16 43 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 45 H 0.11 2.97 4.22 -2.39 -0.01 2.96 16 46 H 0.00 0.05 7.97 -2.39 -0.02 0.03 16 47 H 0.08 3.92 6.05 -2.38 -0.01 3.90 16 48 H 0.25 13.64 8.31 -92.71 -0.77 12.87 16 49 H 0.01 0.28 8.14 -2.39 -0.02 0.26 16 50 H 0.07 2.98 7.94 -2.39 -0.02 2.97 16 51 H 0.08 3.08 6.99 -2.38 -0.02 3.06 16 52 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 Total: -1.00 -67.27 386.37 3.46 -63.81 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 0.88 Total: 20.26 kcal Atomic # 6 Polarization: 10.54 SS G_CDS: 5.71 Total: 16.24 kcal Atomic # 7 Polarization: -103.41 SS G_CDS: -4.23 Total: -107.64 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -0.93 Total: -37.55 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -67.27 3.46 -63.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331009139.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.675 kcal (2) G-P(sol) polarization free energy of solvation -67.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds