Wall clock time and date at job start Tue Mar 31 2020 14:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46937 * 2 1 4 4 H 1.09006 * 109.48107 * 305.02066 * 3 2 1 5 5 O 1.42905 * 109.49328 * 65.05434 * 3 2 1 6 6 C 1.42899 * 114.09684 * 181.14787 * 5 3 2 7 7 C 1.53091 * 109.41514 * 298.83499 * 6 5 3 8 8 C 1.53179 * 109.16037 * 57.61489 * 7 6 5 9 9 C 1.53090 * 109.48050 * 184.99950 * 3 2 1 10 10 H 1.08994 * 109.52309 * 302.36757 * 9 3 2 11 11 C 1.50701 * 109.52356 * 62.48982 * 9 3 2 12 12 O 1.21285 * 119.99711 * 0.02562 * 11 9 3 13 13 N 1.34777 * 120.00381 * 179.97438 * 11 9 3 14 14 C 1.46495 * 120.00107 * 180.02562 * 13 11 9 15 15 C 1.53003 * 109.47229 * 180.02562 * 14 13 11 16 16 C 1.53042 * 109.45665 * 295.02714 * 15 14 13 17 17 C 1.53201 * 109.30793 * 178.59794 * 16 15 14 18 18 N 1.46930 * 108.76168 * 54.65826 * 17 16 15 19 19 C 1.36940 * 120.62783 * 126.36330 * 18 17 16 20 20 H 1.08000 * 119.99231 * 208.01877 * 19 18 17 21 21 C 1.38813 * 120.00205 * 28.01488 * 19 18 17 22 22 N 1.31619 * 119.99856 * 17.52877 * 21 19 18 23 23 Si 1.86792 * 119.99919 * 197.52678 * 21 19 18 24 24 H 1.48501 * 109.47542 * 94.06732 * 23 21 19 25 25 H 1.48498 * 109.47352 * 214.06946 * 23 21 19 26 26 H 1.48503 * 109.47319 * 334.06453 * 23 21 19 27 27 C 1.46921 * 118.73847 * 306.37614 * 18 17 16 28 28 C 1.53043 * 109.45973 * 174.97301 * 15 14 13 29 29 H 1.09004 * 109.47151 * 299.99830 * 1 2 3 30 30 H 1.09001 * 109.47131 * 60.00035 * 1 2 3 31 31 H 1.09004 * 109.47241 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47151 * 240.00170 * 2 1 3 33 33 H 1.09001 * 109.47131 * 119.99965 * 2 1 3 34 34 H 1.08997 * 109.48664 * 58.82353 * 6 5 3 35 35 H 1.09012 * 109.47812 * 178.85475 * 6 5 3 36 36 H 1.08997 * 109.51953 * 177.51716 * 7 6 5 37 37 H 1.08998 * 109.52517 * 297.70746 * 7 6 5 38 38 H 1.09000 * 109.53949 * 183.15208 * 8 7 6 39 39 H 1.09000 * 109.54315 * 62.88124 * 8 7 6 40 40 H 0.97000 * 119.99759 * 0.02562 * 13 11 9 41 41 H 1.09003 * 109.47104 * 59.99997 * 14 13 11 42 42 H 1.09003 * 109.46997 * 300.00245 * 14 13 11 43 43 H 1.09000 * 109.45714 * 54.99819 * 15 14 13 44 44 H 1.08997 * 109.49717 * 298.55971 * 16 15 14 45 45 H 1.09000 * 109.49608 * 58.66344 * 16 15 14 46 46 H 1.08991 * 109.59791 * 294.86872 * 17 16 15 47 47 H 1.09002 * 109.69862 * 174.50613 * 17 16 15 48 48 H 0.96999 * 119.99562 * 179.97438 * 22 21 19 49 49 H 1.08996 * 109.59050 * 293.82802 * 27 18 17 50 50 H 1.08998 * 109.70544 * 173.46683 * 27 18 17 51 51 H 1.08996 * 109.49703 * 301.33429 * 28 15 14 52 52 H 1.08992 * 109.49595 * 61.40303 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6051 1.9818 -0.8416 5 8 1.6632 2.0815 1.2215 6 6 2.0699 3.4482 1.3145 7 6 3.5968 3.5309 1.2416 8 6 4.0733 2.8886 -0.0649 9 6 3.5657 1.4446 -0.1258 10 1 3.9994 0.8702 0.6927 11 6 3.9634 0.8261 -1.4412 12 8 3.1111 0.4233 -2.2042 13 7 5.2662 0.7216 -1.7702 14 6 5.6528 0.1208 -3.0492 15 6 7.1778 0.1234 -3.1737 16 6 7.6818 1.5671 -3.2348 17 6 9.2112 1.5664 -3.3242 18 7 9.6174 0.7367 -4.4667 19 6 10.4487 1.2382 -5.4325 20 1 10.3962 0.8564 -6.4414 21 6 11.3587 2.2371 -5.1147 22 7 11.6740 2.4643 -3.8572 23 14 12.1357 3.2588 -6.4718 24 1 11.3480 4.5023 -6.6681 25 1 13.5278 3.6095 -6.0921 26 1 12.1491 2.4769 -7.7342 27 6 9.1146 -0.6411 -4.5534 28 6 7.5864 -0.6156 -4.4500 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6354 4.0138 0.4902 35 1 1.7281 3.8655 2.2618 36 1 3.9067 4.5756 1.2680 37 1 4.0313 2.9996 2.0884 38 1 5.1628 2.8938 -0.0975 39 1 3.6790 3.4497 -0.9120 40 1 5.9479 1.0441 -1.1601 41 1 5.2202 0.6973 -3.8669 42 1 5.2867 -0.9049 -3.0942 43 1 7.6135 -0.3770 -2.3089 44 1 7.2661 2.0607 -4.1133 45 1 7.3703 2.0996 -2.3362 46 1 9.6308 1.1550 -2.4062 47 1 9.5715 2.5853 -3.4660 48 1 12.3101 3.1621 -3.6353 49 1 9.5264 -1.2325 -3.7357 50 1 9.4090 -1.0805 -5.5065 51 1 7.2070 -1.6369 -4.4163 52 1 7.1711 -0.1016 -5.3168 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331202937.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:39 Heat of formation + Delta-G solvation = -91.542498 kcal Electronic energy + Delta-G solvation = -28755.268018 eV Core-core repulsion = 24947.018371 eV Total energy + Delta-G solvation = -3808.249647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.72435 -38.90435 -37.77846 -35.12286 -34.20289 -33.84053 -32.82744 -30.82692 -30.15494 -29.86835 -26.96717 -25.60465 -24.76444 -23.65627 -22.29801 -21.54585 -21.29712 -20.94138 -20.12072 -19.11315 -17.54737 -16.79992 -16.70593 -15.99357 -15.60008 -15.44411 -14.88394 -14.74870 -14.54098 -14.21618 -13.90385 -13.76696 -13.55435 -13.53520 -13.34375 -13.12701 -12.93907 -12.44679 -12.40033 -12.31527 -11.94205 -11.87860 -11.53777 -11.46803 -11.41952 -11.15014 -11.01915 -10.93205 -10.76046 -10.53855 -10.48669 -10.27236 -10.24126 -9.95106 -9.86044 -9.67732 -9.53068 -9.43419 -8.99343 -8.49728 -6.70269 -5.82149 -3.24031 2.55129 3.08777 3.35479 3.42930 3.44079 3.61263 4.28494 4.42293 4.45413 4.47409 4.62199 4.83082 4.92521 4.97415 5.09793 5.12970 5.17449 5.22247 5.30580 5.32477 5.38186 5.39725 5.49913 5.53598 5.55266 5.60646 5.66339 5.79798 5.84125 5.87788 5.89529 5.95044 6.02648 6.08054 6.11652 6.23827 6.27345 6.40876 6.50454 6.53951 6.63804 6.72760 6.78846 6.95580 6.98462 7.31643 7.47941 7.60473 7.77298 8.17202 8.42355 9.18711 9.82224 10.38839 11.26454 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.020475 B = 0.002535 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.167817 B =11041.882273 C =11992.602701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.124 4.124 3 C 0.114 3.886 4 H 0.066 0.934 5 O -0.376 6.376 6 C 0.058 3.942 7 C -0.154 4.154 8 C -0.115 4.115 9 C -0.140 4.140 10 H 0.104 0.896 11 C 0.519 3.481 12 O -0.541 6.541 13 N -0.721 5.721 14 C 0.123 3.877 15 C -0.091 4.091 16 C -0.134 4.134 17 C 0.171 3.829 18 N -0.592 5.592 19 C -0.251 4.251 20 H 0.066 0.934 21 C 0.001 3.999 22 N -0.903 5.903 23 Si 0.902 3.098 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.278 1.278 27 C 0.146 3.854 28 C -0.124 4.124 29 H 0.057 0.943 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.401 0.599 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.056 0.944 45 H 0.044 0.956 46 H 0.016 0.984 47 H 0.086 0.914 48 H 0.253 0.747 49 H 0.017 0.983 50 H 0.054 0.946 51 H 0.052 0.948 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.296 -0.762 11.228 21.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C 0.056 3.944 4 H 0.084 0.916 5 O -0.295 6.295 6 C -0.019 4.019 7 C -0.192 4.192 8 C -0.153 4.153 9 C -0.162 4.162 10 H 0.122 0.878 11 C 0.305 3.695 12 O -0.419 6.419 13 N -0.372 5.372 14 C 0.000 4.000 15 C -0.110 4.110 16 C -0.173 4.173 17 C 0.045 3.955 18 N -0.315 5.315 19 C -0.381 4.381 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.732 3.268 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.204 1.204 27 C 0.019 3.981 28 C -0.164 4.164 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.117 0.883 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.236 0.764 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.034 0.966 47 H 0.104 0.896 48 H 0.063 0.937 49 H 0.035 0.965 50 H 0.073 0.927 51 H 0.071 0.929 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -18.860 -1.044 10.855 21.786 hybrid contribution 1.106 0.963 -0.486 1.545 sum -17.754 -0.081 10.369 20.560 Atomic orbital electron populations 1.21660 0.95397 1.01311 1.01838 1.21767 0.96779 0.93972 1.03614 1.21855 0.90594 0.95034 0.86907 0.91621 1.87951 1.78265 1.24476 1.38783 1.22591 0.93770 0.83422 1.02119 1.22194 0.97006 1.01908 0.98079 1.21605 1.01663 0.93492 0.98558 1.22020 0.99269 0.98149 0.96747 0.87772 1.20336 0.82624 0.78677 0.87886 1.90659 1.49757 1.49200 1.52249 1.46107 1.07197 1.62280 1.21606 1.21569 0.95947 0.97794 0.84672 1.21314 0.91949 0.98385 0.99330 1.22247 1.01057 0.94042 0.99992 1.20760 0.87638 0.97970 0.89132 1.44055 1.54173 1.07326 1.25967 1.19216 1.11599 1.17911 0.89379 0.91670 1.25036 0.96948 1.01693 0.96038 1.70038 1.35167 1.33461 1.16127 0.86279 0.78306 0.80644 0.81586 1.21500 1.21786 1.20373 1.20880 0.90498 0.87818 0.98858 1.21982 0.99532 0.98352 0.96552 0.92421 0.92935 0.92951 0.88322 0.91916 0.93175 0.88788 0.90319 0.90689 0.90487 0.91090 0.76388 0.91634 0.91928 0.91340 0.92524 0.93697 0.96563 0.89554 0.93683 0.96535 0.92727 0.92946 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.81 37.16 0.36 -1.05 16 2 C -0.12 -1.34 5.41 -26.73 -0.14 -1.48 16 3 C 0.11 1.22 1.78 -26.68 -0.05 1.17 16 4 H 0.07 0.78 8.04 -51.93 -0.42 0.36 16 5 O -0.38 -3.90 9.95 -35.23 -0.35 -4.25 16 6 C 0.06 0.45 6.84 37.20 0.25 0.71 16 7 C -0.15 -1.12 6.14 -26.59 -0.16 -1.28 16 8 C -0.12 -0.99 5.19 -26.55 -0.14 -1.13 16 9 C -0.14 -1.39 2.23 -91.63 -0.20 -1.60 16 10 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 11 C 0.52 6.46 6.83 -10.98 -0.08 6.38 16 12 O -0.54 -8.38 13.84 5.55 0.08 -8.31 16 13 N -0.72 -8.56 5.18 -60.29 -0.31 -8.88 16 14 C 0.12 1.68 5.06 -4.04 -0.02 1.65 16 15 C -0.09 -1.38 2.19 -90.57 -0.20 -1.58 16 16 C -0.13 -2.34 5.25 -26.61 -0.14 -2.48 16 17 C 0.17 3.88 5.31 -3.70 -0.02 3.86 16 18 N -0.59 -14.44 2.99 -172.32 -0.52 -14.95 16 19 C -0.25 -6.80 9.58 -15.06 -0.14 -6.94 16 20 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 21 C 0.00 0.04 4.90 -17.43 -0.09 -0.05 16 22 N -0.90 -25.78 11.22 55.49 0.62 -25.16 16 23 Si 0.90 21.48 29.59 -169.99 -5.03 16.45 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 27 C 0.15 2.96 6.51 -3.71 -0.02 2.93 16 28 C -0.12 -2.04 5.36 -26.61 -0.14 -2.18 16 29 H 0.06 0.55 7.83 -51.93 -0.41 0.15 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.10 1.23 5.65 -51.93 -0.29 0.93 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.61 7.69 -51.93 -0.40 0.21 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.40 4.14 7.16 -40.82 -0.29 3.85 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.04 0.68 7.15 -51.93 -0.37 0.31 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.09 2.23 6.06 -51.93 -0.31 1.91 16 48 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 49 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 50 H 0.05 1.09 7.94 -51.93 -0.41 0.68 16 51 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 52 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 394.60 15.07 5.95 5.95 Total: -1.00 -30.41 394.60 -10.13 -40.54 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -9.64 Total: 1.67 kcal Atomic # 6 Polarization: -2.13 SS G_CDS: -0.93 Total: -3.06 kcal Atomic # 7 Polarization: -48.78 SS G_CDS: -0.21 Total: -48.99 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -0.27 Total: -12.56 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.41 -10.13 -40.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331202937.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.000 kcal (2) G-P(sol) polarization free energy of solvation -30.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds