Wall clock time and date at job start Tue Mar 31 2020 14:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46937 * 2 1 4 4 H 1.09006 * 109.48107 * 305.02066 * 3 2 1 5 5 O 1.42905 * 109.49328 * 65.05434 * 3 2 1 6 6 C 1.42899 * 114.09684 * 181.14787 * 5 3 2 7 7 C 1.53091 * 109.41514 * 298.83499 * 6 5 3 8 8 C 1.53179 * 109.16037 * 57.61489 * 7 6 5 9 9 C 1.53090 * 109.48050 * 184.99950 * 3 2 1 10 10 H 1.08994 * 109.52309 * 302.36757 * 9 3 2 11 11 C 1.50701 * 109.52356 * 62.48982 * 9 3 2 12 12 O 1.21285 * 119.99711 * 0.02562 * 11 9 3 13 13 N 1.34777 * 120.00381 * 179.97438 * 11 9 3 14 14 C 1.46495 * 120.00107 * 180.02562 * 13 11 9 15 15 C 1.53003 * 109.47229 * 180.02562 * 14 13 11 16 16 C 1.53042 * 109.45665 * 295.02714 * 15 14 13 17 17 C 1.53201 * 109.30793 * 178.59794 * 16 15 14 18 18 N 1.46930 * 108.76168 * 54.65826 * 17 16 15 19 19 C 1.36940 * 120.62783 * 126.36330 * 18 17 16 20 20 H 1.08000 * 119.99231 * 208.01877 * 19 18 17 21 21 C 1.38813 * 120.00205 * 28.01488 * 19 18 17 22 22 N 1.31619 * 119.99856 * 17.52877 * 21 19 18 23 23 Si 1.86792 * 119.99919 * 197.52678 * 21 19 18 24 24 H 1.48501 * 109.47542 * 94.06732 * 23 21 19 25 25 H 1.48498 * 109.47352 * 214.06946 * 23 21 19 26 26 H 1.48503 * 109.47319 * 334.06453 * 23 21 19 27 27 C 1.46921 * 118.73847 * 306.37614 * 18 17 16 28 28 C 1.53043 * 109.45973 * 174.97301 * 15 14 13 29 29 H 1.09004 * 109.47151 * 299.99830 * 1 2 3 30 30 H 1.09001 * 109.47131 * 60.00035 * 1 2 3 31 31 H 1.09004 * 109.47241 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47151 * 240.00170 * 2 1 3 33 33 H 1.09001 * 109.47131 * 119.99965 * 2 1 3 34 34 H 1.08997 * 109.48664 * 58.82353 * 6 5 3 35 35 H 1.09012 * 109.47812 * 178.85475 * 6 5 3 36 36 H 1.08997 * 109.51953 * 177.51716 * 7 6 5 37 37 H 1.08998 * 109.52517 * 297.70746 * 7 6 5 38 38 H 1.09000 * 109.53949 * 183.15208 * 8 7 6 39 39 H 1.09000 * 109.54315 * 62.88124 * 8 7 6 40 40 H 0.97000 * 119.99759 * 0.02562 * 13 11 9 41 41 H 1.09003 * 109.47104 * 59.99997 * 14 13 11 42 42 H 1.09003 * 109.46997 * 300.00245 * 14 13 11 43 43 H 1.09000 * 109.45714 * 54.99819 * 15 14 13 44 44 H 1.08997 * 109.49717 * 298.55971 * 16 15 14 45 45 H 1.09000 * 109.49608 * 58.66344 * 16 15 14 46 46 H 1.08991 * 109.59791 * 294.86872 * 17 16 15 47 47 H 1.09002 * 109.69862 * 174.50613 * 17 16 15 48 48 H 0.96999 * 119.99562 * 179.97438 * 22 21 19 49 49 H 1.08996 * 109.59050 * 293.82802 * 27 18 17 50 50 H 1.08998 * 109.70544 * 173.46683 * 27 18 17 51 51 H 1.08996 * 109.49703 * 301.33429 * 28 15 14 52 52 H 1.08992 * 109.49595 * 61.40303 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6051 1.9818 -0.8416 5 8 1.6632 2.0815 1.2215 6 6 2.0699 3.4482 1.3145 7 6 3.5968 3.5309 1.2416 8 6 4.0733 2.8886 -0.0649 9 6 3.5657 1.4446 -0.1258 10 1 3.9994 0.8702 0.6927 11 6 3.9634 0.8261 -1.4412 12 8 3.1111 0.4233 -2.2042 13 7 5.2662 0.7216 -1.7702 14 6 5.6528 0.1208 -3.0492 15 6 7.1778 0.1234 -3.1737 16 6 7.6818 1.5671 -3.2348 17 6 9.2112 1.5664 -3.3242 18 7 9.6174 0.7367 -4.4667 19 6 10.4487 1.2382 -5.4325 20 1 10.3962 0.8564 -6.4414 21 6 11.3587 2.2371 -5.1147 22 7 11.6740 2.4643 -3.8572 23 14 12.1357 3.2588 -6.4718 24 1 11.3480 4.5023 -6.6681 25 1 13.5278 3.6095 -6.0921 26 1 12.1491 2.4769 -7.7342 27 6 9.1146 -0.6411 -4.5534 28 6 7.5864 -0.6156 -4.4500 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6354 4.0138 0.4902 35 1 1.7281 3.8655 2.2618 36 1 3.9067 4.5756 1.2680 37 1 4.0313 2.9996 2.0884 38 1 5.1628 2.8938 -0.0975 39 1 3.6790 3.4497 -0.9120 40 1 5.9479 1.0441 -1.1601 41 1 5.2202 0.6973 -3.8669 42 1 5.2867 -0.9049 -3.0942 43 1 7.6135 -0.3770 -2.3089 44 1 7.2661 2.0607 -4.1133 45 1 7.3703 2.0996 -2.3362 46 1 9.6308 1.1550 -2.4062 47 1 9.5715 2.5853 -3.4660 48 1 12.3101 3.1621 -3.6353 49 1 9.5264 -1.2325 -3.7357 50 1 9.4090 -1.0805 -5.5065 51 1 7.2070 -1.6369 -4.4163 52 1 7.1711 -0.1016 -5.3168 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331202937.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:21:38 Heat of formation + Delta-G solvation = -109.314976 kcal Electronic energy + Delta-G solvation = -28756.038690 eV Core-core repulsion = 24947.018371 eV Total energy + Delta-G solvation = -3809.020320 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.61655 -39.91900 -39.14083 -36.46109 -35.10341 -34.66066 -34.30580 -32.39871 -31.52080 -31.00814 -28.44349 -26.31555 -26.11615 -24.89436 -23.83854 -22.72140 -22.24769 -21.94503 -21.10661 -20.55673 -18.76514 -18.36901 -17.54067 -16.93848 -16.80262 -16.50276 -16.32590 -15.75591 -15.55073 -15.39754 -15.28576 -15.13728 -14.80898 -14.66054 -14.25846 -14.19904 -14.02758 -13.95496 -13.67325 -13.33793 -13.13770 -13.05813 -12.83417 -12.66847 -12.58357 -12.29215 -12.28380 -12.15112 -11.96179 -11.86044 -11.83401 -11.73076 -11.60742 -11.22943 -11.20307 -11.12793 -10.72676 -10.53699 -10.37274 -10.04470 -8.67100 -7.87942 -5.32190 1.45496 1.47230 1.55900 1.58621 2.13970 2.50783 2.86693 3.26151 3.50657 3.69038 3.69997 3.71485 3.86259 3.96013 3.98175 4.07179 4.13332 4.17329 4.24638 4.37214 4.51501 4.53239 4.54571 4.55132 4.69303 4.72560 4.74341 4.80354 4.81790 4.88237 4.92844 4.93213 5.01075 5.04280 5.08664 5.13628 5.18014 5.24368 5.25779 5.29852 5.31972 5.39730 5.42093 5.50233 5.56876 5.66719 5.79744 6.26162 6.39871 6.52599 7.16031 7.21421 7.88180 8.38517 9.18090 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.020475 B = 0.002535 C = 0.002334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.167817 B =11041.882273 C =11992.602701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.124 4.124 3 C 0.117 3.883 4 H 0.049 0.951 5 O -0.386 6.386 6 C 0.050 3.950 7 C -0.149 4.149 8 C -0.116 4.116 9 C -0.133 4.133 10 H 0.118 0.882 11 C 0.519 3.481 12 O -0.573 6.573 13 N -0.715 5.715 14 C 0.136 3.864 15 C -0.079 4.079 16 C -0.119 4.119 17 C 0.176 3.824 18 N -0.612 5.612 19 C -0.262 4.262 20 H 0.063 0.937 21 C -0.050 4.050 22 N -0.933 5.933 23 Si 0.963 3.037 24 H -0.287 1.287 25 H -0.294 1.294 26 H -0.270 1.270 27 C 0.141 3.859 28 C -0.115 4.115 29 H 0.058 0.942 30 H 0.046 0.954 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.112 0.888 36 H 0.094 0.906 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.411 0.589 41 H 0.054 0.946 42 H 0.069 0.931 43 H 0.077 0.923 44 H 0.044 0.956 45 H 0.071 0.929 46 H 0.000 1.000 47 H 0.050 0.950 48 H 0.250 0.750 49 H 0.016 0.984 50 H 0.051 0.949 51 H 0.083 0.917 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.305 -0.833 12.086 22.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C 0.059 3.941 4 H 0.067 0.933 5 O -0.305 6.305 6 C -0.026 4.026 7 C -0.186 4.186 8 C -0.153 4.153 9 C -0.154 4.154 10 H 0.136 0.864 11 C 0.306 3.694 12 O -0.453 6.453 13 N -0.366 5.366 14 C 0.012 3.988 15 C -0.098 4.098 16 C -0.158 4.158 17 C 0.051 3.949 18 N -0.336 5.336 19 C -0.392 4.392 20 H 0.081 0.919 21 C -0.246 4.246 22 N -0.579 5.579 23 Si 0.792 3.208 24 H -0.214 1.214 25 H -0.221 1.221 26 H -0.194 1.194 27 C 0.015 3.985 28 C -0.155 4.155 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.068 0.932 35 H 0.130 0.870 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.080 0.920 40 H 0.248 0.752 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.063 0.937 45 H 0.090 0.910 46 H 0.018 0.982 47 H 0.068 0.932 48 H 0.059 0.941 49 H 0.034 0.966 50 H 0.070 0.930 51 H 0.102 0.898 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -19.878 -1.126 11.721 23.104 hybrid contribution 1.416 0.950 -0.743 1.860 sum -18.462 -0.176 10.978 21.480 Atomic orbital electron populations 1.21633 0.94818 1.01863 1.01582 1.21722 0.97366 0.94075 1.02971 1.21729 0.91004 0.94761 0.86640 0.93323 1.87934 1.78595 1.25750 1.38268 1.22812 0.94426 0.82257 1.03132 1.22174 0.96351 1.02779 0.97310 1.21641 1.02191 0.92414 0.99095 1.21986 0.98832 0.99064 0.95518 0.86376 1.20741 0.82232 0.78007 0.88371 1.90653 1.50616 1.50561 1.53454 1.46016 1.07450 1.62003 1.21165 1.21295 0.94180 0.98137 0.85146 1.21165 0.93110 0.96435 0.99076 1.22028 0.96913 0.96144 1.00732 1.20596 0.90901 0.95547 0.87895 1.44348 1.54226 1.09247 1.25801 1.19509 1.11671 1.17994 0.90042 0.91914 1.25742 0.97909 1.02924 0.97976 1.70175 1.35973 1.33992 1.17777 0.85313 0.77047 0.79057 0.79414 1.21360 1.22108 1.19446 1.21043 0.93065 0.85710 0.98665 1.21853 0.96332 1.00380 0.96893 0.92258 0.93532 0.92030 0.90048 0.91298 0.93190 0.86977 0.88794 0.90132 0.89527 0.92026 0.75233 0.92771 0.91285 0.90500 0.93744 0.91031 0.98230 0.93192 0.94123 0.96566 0.93047 0.89830 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.66 9.81 71.98 0.71 -1.95 16 2 C -0.12 -2.58 5.41 30.59 0.17 -2.41 16 3 C 0.12 2.38 1.78 30.62 0.05 2.44 16 4 H 0.05 1.15 8.04 -2.38 -0.02 1.13 16 5 O -0.39 -7.40 9.95 -148.98 -1.48 -8.88 16 6 C 0.05 0.69 6.84 72.01 0.49 1.18 16 7 C -0.15 -1.77 6.14 30.68 0.19 -1.58 16 8 C -0.12 -1.74 5.19 30.71 0.16 -1.58 16 9 C -0.13 -2.40 2.23 -11.45 -0.03 -2.42 16 10 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 11 C 0.52 12.14 6.83 87.66 0.60 12.74 16 12 O -0.57 -17.34 13.84 -3.05 -0.04 -17.38 16 13 N -0.71 -15.40 5.18 -463.05 -2.40 -17.79 16 14 C 0.14 3.39 5.06 86.38 0.44 3.83 16 15 C -0.08 -2.23 2.19 -10.76 -0.02 -2.25 16 16 C -0.12 -4.03 5.25 30.68 0.16 -3.87 16 17 C 0.18 8.08 5.31 86.36 0.46 8.54 16 18 N -0.61 -30.07 2.99 -699.09 -2.09 -32.16 16 19 C -0.26 -14.32 9.58 84.03 0.81 -13.52 16 20 H 0.06 3.38 7.89 -2.91 -0.02 3.36 16 21 C -0.05 -2.78 4.90 84.86 0.42 -2.36 16 22 N -0.93 -54.43 11.22 21.65 0.24 -54.18 16 23 Si 0.96 44.66 29.59 68.60 2.03 46.69 16 24 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 25 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 26 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 27 C 0.14 5.59 6.51 86.36 0.56 6.16 16 28 C -0.12 -3.55 5.36 30.67 0.16 -3.39 16 29 H 0.06 1.08 7.83 -2.38 -0.02 1.06 16 30 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.08 2.00 5.65 -2.38 -0.01 1.99 16 33 H 0.07 1.31 8.14 -2.39 -0.02 1.30 16 34 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.09 0.86 8.14 -2.39 -0.02 0.85 16 37 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.09 1.14 7.69 -2.39 -0.02 1.12 16 39 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.41 7.32 7.16 -92.71 -0.66 6.65 16 41 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 44 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.07 2.02 7.15 -2.39 -0.02 2.00 16 46 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 47 H 0.05 2.65 6.06 -2.39 -0.01 2.63 16 48 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 49 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.05 2.03 7.94 -2.39 -0.02 2.02 16 51 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 52 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -66.55 394.60 1.79 -64.76 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: 0.21 Total: 19.41 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 5.32 Total: -0.46 kcal Atomic # 7 Polarization: -99.89 SS G_CDS: -4.25 Total: -104.14 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -1.52 Total: -26.27 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -66.55 1.79 -64.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331202937.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.557 kcal (2) G-P(sol) polarization free energy of solvation -66.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds