Wall clock time and date at job start Tue Mar 31 2020 15:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46991 * 2 1 4 4 H 1.08999 * 109.46875 * 304.99728 * 3 2 1 5 5 C 1.52999 * 109.46984 * 64.99885 * 3 2 1 6 6 C 1.53005 * 109.46832 * 184.99647 * 3 2 1 7 7 H 1.09002 * 109.46916 * 55.16425 * 6 3 2 8 8 C 1.52991 * 109.47396 * 295.16213 * 6 3 2 9 9 N 1.46501 * 109.46659 * 175.16056 * 6 3 2 10 10 C 1.34778 * 119.99886 * 114.21554 * 9 6 3 11 11 O 1.21358 * 119.99710 * 4.54791 * 10 9 6 12 12 C 1.49444 * 120.00457 * 184.54709 * 10 9 6 13 13 O 1.21353 * 119.99850 * 5.01273 * 12 10 9 14 14 N 1.34770 * 120.00365 * 185.01588 * 12 10 9 15 15 C 1.46499 * 120.00290 * 179.97438 * 14 12 10 16 16 C 1.52996 * 109.47430 * 179.97438 * 15 14 12 17 17 C 1.53004 * 109.47467 * 180.02562 * 16 15 14 18 18 C 1.50695 * 109.47194 * 180.02562 * 17 16 15 19 19 H 1.07992 * 120.00351 * 0.02562 * 18 17 16 20 20 C 1.37885 * 120.00024 * 179.97438 * 18 17 16 21 21 N 1.31519 * 119.99691 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00183 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46964 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47400 * 120.00098 * 22 20 18 25 25 H 1.48505 * 109.46686 * 240.00209 * 22 20 18 26 26 C 1.46498 * 120.00418 * 294.21195 * 9 6 3 27 27 C 1.53002 * 117.49763 * 0.88764 * 26 9 6 28 28 C 1.52992 * 59.99957 * 252.50919 * 27 26 9 29 29 H 1.09003 * 109.46527 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47361 * 300.00224 * 1 2 3 31 31 H 1.08993 * 109.46700 * 60.00519 * 1 2 3 32 32 H 1.08998 * 109.47361 * 239.99775 * 2 1 3 33 33 H 1.09003 * 109.46827 * 119.99542 * 2 1 3 34 34 H 1.08997 * 109.47227 * 64.42349 * 5 3 2 35 35 H 1.09006 * 109.46496 * 184.42132 * 5 3 2 36 36 H 1.08997 * 109.47125 * 304.41974 * 5 3 2 37 37 H 1.09000 * 109.47202 * 181.78508 * 8 6 3 38 38 H 1.09002 * 109.47197 * 301.78794 * 8 6 3 39 39 H 1.09009 * 109.47323 * 61.78435 * 8 6 3 40 40 H 0.97004 * 120.00128 * 359.97438 * 14 12 10 41 41 H 1.09000 * 109.47029 * 300.00072 * 15 14 12 42 42 H 1.09005 * 109.47014 * 59.99525 * 15 14 12 43 43 H 1.09000 * 109.47375 * 300.00229 * 16 15 14 44 44 H 1.09005 * 109.47108 * 59.99952 * 16 15 14 45 45 H 1.09009 * 109.46802 * 300.00273 * 17 16 15 46 46 H 1.08997 * 109.47111 * 59.99501 * 17 16 15 47 47 H 0.96994 * 119.99983 * 180.02562 * 21 20 18 48 48 H 1.08999 * 115.55151 * 146.59329 * 26 9 6 49 49 H 1.09000 * 117.50026 * 359.97438 * 27 26 9 50 50 H 1.09001 * 117.49814 * 145.02021 * 27 26 9 51 51 H 1.09001 * 117.49835 * 252.51062 * 28 27 26 52 52 H 1.08998 * 117.50292 * 107.48933 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1266 1.3073 6 6 3.5649 1.4443 -0.1256 7 1 3.8570 0.8824 -1.0128 8 6 4.1797 0.7940 1.1152 9 7 4.0436 2.8240 -0.2419 10 6 4.8018 3.3589 0.7357 11 8 5.1568 2.6732 1.6720 12 6 5.2053 4.7962 0.6668 13 8 4.7763 5.5049 -0.2200 14 7 6.0456 5.3052 1.5893 15 6 6.4415 6.7141 1.5214 16 6 7.3923 7.0329 2.6769 17 6 7.8054 8.5045 2.6063 18 6 8.7423 8.8183 3.7441 19 1 9.0161 8.0456 4.4470 20 6 9.2508 10.0920 3.8871 21 7 8.9177 11.0330 3.0308 22 14 10.4127 10.4809 5.2970 23 1 10.6268 9.2591 6.1134 24 1 11.7132 10.9471 4.7525 25 1 9.8213 11.5459 6.1464 26 6 3.6983 3.6224 -1.4206 27 6 2.8177 2.9655 -2.4855 28 6 4.3040 3.2016 -2.7611 29 1 -0.3632 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3632 0.5137 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 2.1328 1.6355 2.1436 35 1 1.9295 3.1756 1.2747 36 1 0.5551 2.0560 1.4350 37 1 5.2667 0.8238 1.0403 38 1 3.8618 1.3370 2.0053 39 1 3.8485 -0.2422 1.1843 40 1 6.3882 4.7388 2.2983 41 1 6.9445 6.9048 0.5733 42 1 5.5554 7.3445 1.5958 43 1 6.8890 6.8423 3.6247 44 1 8.2784 6.4025 2.6028 45 1 8.3086 8.6955 1.6584 46 1 6.9191 9.1346 2.6805 47 1 9.2756 11.9289 3.1312 48 1 3.5622 4.6891 -1.2426 49 1 2.4957 1.9392 -2.3093 50 1 2.1020 3.6001 -3.0082 51 1 4.5661 3.9914 -3.4650 52 1 4.9595 2.3308 -2.7659 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343139806.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:53 Heat of formation + Delta-G solvation = -37.165926 kcal Electronic energy + Delta-G solvation = -28448.827725 eV Core-core repulsion = 24642.936023 eV Total energy + Delta-G solvation = -3805.891702 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.33881 -39.25196 -37.95387 -36.75210 -35.58541 -33.65752 -33.22993 -31.27372 -31.02025 -28.93090 -27.17974 -25.91000 -24.87482 -23.42624 -22.82418 -22.58581 -21.60719 -20.80727 -19.92779 -19.18257 -17.69904 -16.82730 -16.59585 -16.31181 -15.67918 -15.62195 -15.57510 -15.31474 -14.77087 -14.46235 -14.42493 -13.98608 -13.78034 -13.73186 -13.43457 -13.02389 -12.53322 -12.35817 -12.32675 -12.24591 -12.06154 -11.87958 -11.85853 -11.79268 -11.69349 -11.41654 -11.21802 -10.97409 -10.93740 -10.77342 -10.72151 -10.57981 -10.50256 -10.34523 -9.91348 -9.56436 -9.15731 -8.99658 -8.88430 -8.67520 -8.39067 -6.03678 -4.06513 1.41569 2.23123 3.19377 3.29521 3.36763 3.38215 3.41701 3.61535 4.29815 4.39583 4.43681 4.47580 4.49260 4.63977 4.73730 4.82392 4.85898 5.01466 5.13413 5.23169 5.28485 5.30623 5.32396 5.37737 5.54043 5.59025 5.62938 5.64507 5.65275 5.68629 5.72943 5.75339 5.80559 5.84905 5.95014 5.97338 6.05875 6.07466 6.12914 6.35122 6.45689 6.53444 6.72680 6.94280 6.96593 7.33953 7.61084 7.72485 7.75285 7.94918 8.09076 8.36213 9.00259 9.57884 11.07624 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.023986 B = 0.002171 C = 0.002079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.048975 B =12891.636264 C =13468.009625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.112 4.112 4 H 0.085 0.915 5 C -0.149 4.149 6 C 0.143 3.857 7 H 0.074 0.926 8 C -0.143 4.143 9 N -0.554 5.554 10 C 0.512 3.488 11 O -0.512 6.512 12 C 0.499 3.501 13 O -0.521 6.521 14 N -0.691 5.691 15 C 0.114 3.886 16 C -0.123 4.123 17 C 0.024 3.976 18 C -0.522 4.522 19 H 0.057 0.943 20 C 0.056 3.944 21 N -0.894 5.894 22 Si 0.893 3.107 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.059 3.941 27 C -0.194 4.194 28 C -0.189 4.189 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.045 0.955 40 H 0.410 0.590 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.020 0.980 46 H 0.020 0.980 47 H 0.261 0.739 48 H 0.173 0.827 49 H 0.102 0.898 50 H 0.104 0.896 51 H 0.103 0.897 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.188 -22.887 -10.104 29.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.131 4.131 4 H 0.103 0.897 5 C -0.206 4.206 6 C 0.041 3.959 7 H 0.092 0.908 8 C -0.200 4.200 9 N -0.285 5.285 10 C 0.295 3.705 11 O -0.388 6.388 12 C 0.280 3.720 13 O -0.399 6.399 14 N -0.342 5.342 15 C -0.008 4.008 16 C -0.161 4.161 17 C -0.013 4.013 18 C -0.560 4.560 19 H 0.075 0.925 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.044 4.044 27 C -0.231 4.231 28 C -0.228 4.228 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.064 0.936 40 H 0.246 0.754 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.075 0.925 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.070 0.930 48 H 0.189 0.811 49 H 0.120 0.880 50 H 0.122 0.878 51 H 0.122 0.878 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -16.249 -22.550 -10.243 29.622 hybrid contribution 0.827 0.055 0.867 1.199 sum -15.422 -22.495 -9.377 28.841 Atomic orbital electron populations 1.21814 0.95624 1.01527 1.02041 1.21558 0.96086 0.95705 1.02213 1.21790 0.94454 0.96939 0.99922 0.89708 1.21906 1.01143 1.00581 0.96966 1.21335 0.93763 0.80757 1.00035 0.90841 1.22428 1.01655 0.98571 0.97345 1.47265 1.49209 1.13232 1.18823 1.20282 0.79338 0.88182 0.82664 1.90830 1.53747 1.60558 1.33621 1.20159 0.80673 0.88259 0.82931 1.90549 1.53880 1.61059 1.34412 1.46081 1.45296 1.13572 1.29256 1.21830 0.99392 0.78396 1.01158 1.21924 0.97010 1.01763 0.95363 1.19035 0.96639 0.88087 0.97577 1.21238 1.27546 0.95498 1.11723 0.92520 1.25036 0.96683 0.96456 0.96346 1.69972 1.44574 1.02524 1.36214 0.86517 0.80715 0.78347 0.82309 1.19726 1.21000 1.21000 1.22912 1.03251 0.97835 0.80416 1.23494 0.94316 1.02553 1.02735 1.23341 0.95651 1.03844 0.99917 0.92820 0.92345 0.92795 0.92070 0.91452 0.92017 0.92920 0.92416 0.91236 0.89730 0.93622 0.75390 0.91120 0.91142 0.92456 0.92471 0.96211 0.96204 0.92976 0.81065 0.87979 0.87794 0.87828 0.88967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.67 37.16 0.36 -0.51 16 2 C -0.12 -0.73 5.03 -26.73 -0.13 -0.86 16 3 C -0.11 -0.85 1.76 -90.62 -0.16 -1.01 16 4 H 0.08 0.64 5.20 -51.93 -0.27 0.37 16 5 C -0.15 -1.31 8.54 37.16 0.32 -0.99 16 6 C 0.14 1.29 2.07 -67.93 -0.14 1.15 16 7 H 0.07 0.60 7.67 -51.93 -0.40 0.20 16 8 C -0.14 -1.42 6.85 37.15 0.25 -1.16 16 9 N -0.55 -6.03 2.43 -159.09 -0.39 -6.41 16 10 C 0.51 6.74 7.65 -11.59 -0.09 6.66 16 11 O -0.51 -7.15 11.71 5.49 0.06 -7.09 16 12 C 0.50 7.36 7.79 -11.59 -0.09 7.27 16 13 O -0.52 -8.39 13.11 5.49 0.07 -8.32 16 14 N -0.69 -10.22 5.55 -60.73 -0.34 -10.55 16 15 C 0.11 1.93 5.67 -4.04 -0.02 1.91 16 16 C -0.12 -2.37 5.27 -26.73 -0.14 -2.51 16 17 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 18 C -0.52 -14.49 9.11 -34.44 -0.31 -14.80 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 20 C 0.06 1.59 5.46 -17.81 -0.10 1.50 16 21 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 22 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 23 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 C 0.06 0.61 5.33 -67.93 -0.36 0.25 16 27 C -0.19 -1.47 8.52 -26.73 -0.23 -1.70 16 28 C -0.19 -1.68 10.42 -26.74 -0.28 -1.95 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.35 6.47 -51.93 -0.34 0.01 16 31 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.43 6.85 -51.93 -0.36 0.08 16 34 H 0.06 0.57 6.05 -51.93 -0.31 0.26 16 35 H 0.05 0.55 7.87 -51.93 -0.41 0.14 16 36 H 0.06 0.44 6.37 -51.93 -0.33 0.11 16 37 H 0.07 0.80 6.83 -51.93 -0.35 0.45 16 38 H 0.08 0.97 4.56 -51.93 -0.24 0.73 16 39 H 0.05 0.37 6.76 -51.92 -0.35 0.02 16 40 H 0.41 5.57 7.95 -40.82 -0.32 5.24 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 48 H 0.17 2.11 5.21 -52.08 -0.27 1.83 16 49 H 0.10 0.69 5.33 -51.93 -0.28 0.42 16 50 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 51 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 52 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 397.95 15.07 6.00 6.00 Total: -1.00 -30.02 397.95 -8.98 -39.00 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -8.84 Total: 3.10 kcal Atomic # 6 Polarization: -5.04 SS G_CDS: -1.26 Total: -6.30 kcal Atomic # 7 Polarization: -42.85 SS G_CDS: 0.01 Total: -42.83 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: 0.14 Total: -15.41 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.02 -8.98 -39.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343139806.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.832 kcal (2) G-P(sol) polarization free energy of solvation -30.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds