Wall clock time and date at job start Tue Mar 31 2020 14:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50707 * 119.99786 * 2 1 4 4 N 1.46497 * 109.47011 * 125.00396 * 3 2 1 5 5 C 1.46504 * 119.99510 * 274.86373 * 4 3 2 6 6 C 1.50697 * 109.46969 * 265.80615 * 5 4 3 7 7 H 1.08001 * 120.00455 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99706 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00099 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99910 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47271 * 59.99680 * 10 8 6 12 12 H 1.48498 * 109.46992 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.46931 * 299.99695 * 10 8 6 14 14 C 1.34775 * 120.00215 * 94.86730 * 4 3 2 15 15 O 1.21274 * 119.99955 * 355.16687 * 14 4 3 16 16 C 1.50698 * 120.00002 * 175.44080 * 14 4 3 17 17 H 1.09001 * 109.46894 * 317.15151 * 16 14 4 18 18 C 1.52997 * 109.47079 * 77.14581 * 16 14 4 19 19 C 1.52998 * 109.47056 * 183.22815 * 18 16 14 20 20 N 1.46898 * 109.47133 * 197.15123 * 16 14 4 21 21 C 1.47012 * 110.99649 * 296.36323 * 20 16 14 22 22 C 1.53101 * 109.25583 * 182.39449 * 21 20 16 23 23 O 1.43016 * 109.25878 * 303.14922 * 22 21 20 24 24 C 1.43018 * 113.73492 * 58.67209 * 23 22 21 25 25 H 1.09000 * 109.50659 * 61.26246 * 24 23 22 26 26 C 1.52997 * 109.50699 * 181.39327 * 24 23 22 27 27 C 1.53000 * 109.47355 * 294.78206 * 26 24 23 28 28 C 1.47014 * 111.00341 * 59.99971 * 20 16 14 29 29 H 1.07994 * 119.99567 * 180.02562 * 1 2 3 30 30 H 1.08001 * 120.00128 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.00128 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.46941 * 4.99741 * 3 2 1 33 33 H 1.08998 * 109.46558 * 244.99899 * 3 2 1 34 34 H 1.08993 * 109.47293 * 25.81223 * 5 4 3 35 35 H 1.09003 * 109.46563 * 145.81325 * 5 4 3 36 36 H 0.97000 * 119.99903 * 179.97438 * 9 8 6 37 37 H 1.08995 * 109.47912 * 303.23298 * 18 16 14 38 38 H 1.08999 * 109.46982 * 63.23380 * 18 16 14 39 39 H 1.08998 * 109.47787 * 300.00277 * 19 18 16 40 40 H 1.09004 * 109.47039 * 60.00816 * 19 18 16 41 41 H 1.09003 * 109.47034 * 180.02562 * 19 18 16 42 42 H 1.08998 * 109.51075 * 302.32430 * 21 20 16 43 43 H 1.09001 * 109.50894 * 62.46357 * 21 20 16 44 44 H 1.09001 * 109.50988 * 183.21877 * 22 21 20 45 45 H 1.08995 * 109.54511 * 63.11091 * 22 21 20 46 46 H 1.09003 * 109.47317 * 54.78487 * 26 24 23 47 47 H 1.09001 * 109.47722 * 174.78392 * 26 24 23 48 48 H 1.08996 * 109.47502 * 300.00302 * 27 26 24 49 49 H 1.09005 * 109.46708 * 59.99947 * 27 26 24 50 50 H 1.08994 * 109.47541 * 179.97438 * 27 26 24 51 51 H 1.08999 * 109.50347 * 297.54652 * 28 20 16 52 52 H 1.09007 * 109.50454 * 57.62567 * 28 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5292 1.7650 2.4516 6 6 2.8116 3.2349 2.6262 7 1 3.2890 3.7911 1.8331 8 6 2.4605 3.8698 3.7988 9 7 1.8786 3.1926 4.7645 10 14 2.8099 5.6920 4.0151 11 1 2.0972 6.4610 2.9634 12 1 2.3401 6.1306 5.3538 13 1 4.2707 5.9329 3.9003 14 6 4.2771 0.9583 0.9577 15 8 4.6407 0.5171 -0.1119 16 6 5.2586 1.0830 2.0943 17 1 5.1103 2.0376 2.5993 18 6 5.0364 -0.0593 3.0876 19 6 5.9781 0.1124 4.2812 20 7 6.6284 1.0150 1.5681 21 6 6.8926 -0.2947 0.9546 22 6 8.3455 -0.3434 0.4743 23 8 8.5786 0.7367 -0.4336 24 6 8.3316 2.0272 0.1313 25 1 9.0005 2.1886 0.9766 26 6 8.5762 3.1039 -0.9278 27 6 10.0568 3.1132 -1.3132 28 6 6.8786 2.0999 0.6081 29 1 -0.5399 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8501 -0.9353 0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 1.4569 1.5885 2.5353 35 1 3.0518 1.2003 3.2238 36 1 1.6320 3.6392 5.5895 37 1 4.0033 -0.0433 3.4347 38 1 5.2405 -1.0114 2.5979 39 1 7.0112 0.0964 3.9343 40 1 5.7740 1.0646 4.7710 41 1 5.8201 -0.7017 4.9887 42 1 6.7259 -1.0815 1.6903 43 1 6.2238 -0.4408 0.1064 44 1 8.5298 -1.2908 -0.0322 45 1 9.0154 -0.2514 1.3292 46 1 7.9725 2.8898 -1.8098 47 1 8.2993 4.0785 -0.5259 48 1 10.6605 3.3272 -0.4313 49 1 10.3337 2.1385 -1.7151 50 1 10.2310 3.8799 -2.0680 51 1 6.2095 1.9920 -0.2455 52 1 6.7008 3.0611 1.0907 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359399659.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:42 Heat of formation + Delta-G solvation = -56.008452 kcal Electronic energy + Delta-G solvation = -30351.833556 eV Core-core repulsion = 26545.124781 eV Total energy + Delta-G solvation = -3806.708775 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.38517 -38.66695 -36.17700 -35.28686 -33.84353 -33.54347 -32.52162 -31.93715 -29.75443 -28.07128 -27.55756 -25.98412 -24.47730 -23.81597 -23.01812 -21.89979 -20.65060 -20.25795 -19.65710 -18.27936 -16.83075 -16.51891 -16.26921 -16.10524 -15.52321 -15.11554 -14.69071 -14.60635 -14.52973 -14.24568 -13.95641 -13.69843 -13.57688 -13.07855 -13.00077 -12.78588 -12.66674 -12.34909 -11.92350 -11.70362 -11.68486 -11.56688 -11.50949 -11.29675 -11.11572 -11.01490 -10.99760 -10.93698 -10.88760 -10.61571 -10.42966 -10.22886 -10.19243 -10.08057 -9.78317 -9.61020 -9.29616 -9.08489 -8.60561 -7.79848 -7.61470 -6.23461 -4.31257 2.52941 3.20330 3.24055 3.26017 3.30881 3.93426 4.00007 4.15493 4.29399 4.93853 5.08523 5.11427 5.18093 5.24745 5.30778 5.34648 5.37417 5.44662 5.50773 5.54746 5.55651 5.65851 5.71111 5.82585 5.83686 5.88940 5.96967 5.98960 6.05995 6.12799 6.15983 6.20285 6.22226 6.29306 6.31788 6.37728 6.39938 6.52157 6.61185 6.73151 6.76339 6.88651 7.02161 7.16169 7.27270 7.34748 7.45276 7.50274 7.70596 7.99813 8.26365 8.72115 8.93260 9.36550 10.82891 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.009762 B = 0.004884 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.451428 B = 5731.044151 C = 6736.499333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.154 4.154 3 C 0.141 3.859 4 N -0.587 5.587 5 C 0.230 3.770 6 C -0.541 4.541 7 H 0.059 0.941 8 C 0.069 3.931 9 N -0.887 5.887 10 Si 0.894 3.106 11 H -0.276 1.276 12 H -0.285 1.285 13 H -0.274 1.274 14 C 0.492 3.508 15 O -0.571 6.571 16 C 0.069 3.931 17 H 0.127 0.873 18 C -0.114 4.114 19 C -0.138 4.138 20 N -0.506 5.506 21 C -0.012 4.012 22 C 0.070 3.930 23 O -0.382 6.382 24 C 0.100 3.900 25 H 0.061 0.939 26 C -0.117 4.117 27 C -0.146 4.146 28 C 0.013 3.987 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.036 0.964 35 H 0.048 0.952 36 H 0.266 0.734 37 H 0.082 0.918 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.045 0.955 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.089 0.911 45 H 0.049 0.951 46 H 0.069 0.931 47 H 0.075 0.925 48 H 0.051 0.949 49 H 0.060 0.940 50 H 0.051 0.949 51 H 0.062 0.938 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.347 -4.767 -5.517 11.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.173 4.173 3 C 0.017 3.983 4 N -0.317 5.317 5 C 0.110 3.890 6 C -0.580 4.580 7 H 0.077 0.923 8 C -0.135 4.135 9 N -0.525 5.525 10 Si 0.721 3.279 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.200 1.200 14 C 0.279 3.721 15 O -0.453 6.453 16 C -0.042 4.042 17 H 0.145 0.855 18 C -0.152 4.152 19 C -0.195 4.195 20 N -0.229 5.229 21 C -0.140 4.140 22 C -0.007 4.007 23 O -0.301 6.301 24 C 0.042 3.958 25 H 0.079 0.921 26 C -0.155 4.155 27 C -0.203 4.203 28 C -0.115 4.115 29 H 0.111 0.889 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.064 0.936 42 H 0.096 0.904 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.067 0.933 46 H 0.088 0.912 47 H 0.094 0.906 48 H 0.070 0.930 49 H 0.079 0.921 50 H 0.070 0.930 51 H 0.080 0.920 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.834 -4.920 -5.633 11.575 hybrid contribution -0.833 0.994 -0.007 1.297 sum 8.001 -3.926 -5.640 10.547 Atomic orbital electron populations 1.23767 0.95784 1.01547 1.01907 1.23348 0.96025 0.99219 0.98707 1.20428 0.92395 0.94673 0.90779 1.48401 1.08386 1.62829 1.12051 1.19648 0.96413 0.95267 0.77652 1.21405 1.41037 0.94194 1.01331 0.92310 1.24910 0.94594 0.98382 0.95587 1.69904 1.40095 1.36480 1.05994 0.86615 0.78950 0.84916 0.77387 1.20189 1.21082 1.19972 1.21810 0.83587 0.76818 0.89848 1.90480 1.78131 1.47787 1.28948 1.21956 0.85295 1.03346 0.93607 0.85538 1.21630 1.01492 0.96315 0.95732 1.21607 0.99652 1.01555 0.96689 1.62677 1.22313 1.02973 1.34932 1.23239 0.97707 0.92059 1.00994 1.22572 0.95279 0.89928 0.92925 1.87925 1.88717 1.14223 1.39219 1.22107 0.94797 0.83689 0.95228 0.92138 1.21518 0.97584 0.97372 0.98981 1.21685 0.95721 1.01948 1.00961 1.22883 0.97099 0.95371 0.96131 0.88901 0.88471 0.87946 0.90221 0.90217 0.94573 0.93425 0.92397 0.89972 0.92342 0.92116 0.92209 0.93569 0.90422 0.89162 0.89274 0.93320 0.91193 0.90627 0.93022 0.92093 0.93013 0.91971 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.79 14.32 29.01 0.42 -2.38 16 2 C -0.15 -2.54 9.84 -36.02 -0.35 -2.89 16 3 C 0.14 2.59 5.85 -5.19 -0.03 2.56 16 4 N -0.59 -12.00 2.45 -176.44 -0.43 -12.43 16 5 C 0.23 5.24 4.84 -5.19 -0.03 5.21 16 6 C -0.54 -13.46 8.32 -34.44 -0.29 -13.75 16 7 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 8 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 9 N -0.89 -23.55 13.29 55.43 0.74 -22.82 16 10 Si 0.89 19.99 29.54 -169.99 -5.02 14.97 16 11 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 12 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 14 C 0.49 9.86 6.09 -10.99 -0.07 9.79 16 15 O -0.57 -12.11 11.46 5.56 0.06 -12.05 16 16 C 0.07 1.27 1.46 -68.87 -0.10 1.17 16 17 H 0.13 2.63 6.72 -51.93 -0.35 2.28 16 18 C -0.11 -1.90 4.77 -26.73 -0.13 -2.03 16 19 C -0.14 -2.07 9.79 37.16 0.36 -1.70 16 20 N -0.51 -8.46 4.13 -227.72 -0.94 -9.40 16 21 C -0.01 -0.20 4.90 -3.71 -0.02 -0.21 16 22 C 0.07 0.97 7.01 37.21 0.26 1.23 16 23 O -0.38 -5.92 10.02 -35.23 -0.35 -6.28 16 24 C 0.10 1.45 2.80 -26.68 -0.07 1.38 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 26 C -0.12 -1.47 5.64 -26.73 -0.15 -1.62 16 27 C -0.15 -1.59 9.81 37.16 0.36 -1.22 16 28 C 0.01 0.23 4.55 -3.71 -0.02 0.21 16 29 H 0.09 1.17 8.06 -52.49 -0.42 0.75 16 30 H 0.10 1.37 7.84 -52.49 -0.41 0.96 16 31 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 32 H 0.08 1.46 7.76 -51.93 -0.40 1.06 16 33 H 0.08 1.49 7.35 -51.93 -0.38 1.11 16 34 H 0.04 0.89 8.04 -51.93 -0.42 0.47 16 35 H 0.05 1.11 4.54 -51.93 -0.24 0.87 16 36 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 37 H 0.08 1.49 5.62 -51.93 -0.29 1.20 16 38 H 0.06 0.92 6.12 -51.93 -0.32 0.60 16 39 H 0.06 0.87 7.70 -51.93 -0.40 0.47 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.08 1.14 6.04 -51.93 -0.31 0.82 16 43 H 0.09 1.69 5.19 -51.93 -0.27 1.42 16 44 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 47 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.06 0.71 7.83 -51.93 -0.41 0.30 16 50 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.06 1.20 6.07 -51.93 -0.32 0.89 16 52 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 398.12 15.07 6.00 6.00 Total: -1.00 -26.91 398.12 -9.02 -35.93 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -9.13 Total: 8.66 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: 0.05 Total: -2.58 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: -0.64 Total: -44.65 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -0.29 Total: -18.32 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -26.91 -9.02 -35.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359399659.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.074 kcal (2) G-P(sol) polarization free energy of solvation -26.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds