Wall clock time and date at job start Tue Mar 31 2020 14:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50707 * 119.99786 * 2 1 4 4 N 1.46497 * 109.47011 * 125.00396 * 3 2 1 5 5 C 1.46504 * 119.99510 * 274.86373 * 4 3 2 6 6 C 1.50697 * 109.46969 * 265.80615 * 5 4 3 7 7 H 1.08001 * 120.00455 * 0.02562 * 6 5 4 8 8 C 1.37885 * 119.99706 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00099 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99910 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47271 * 59.99680 * 10 8 6 12 12 H 1.48498 * 109.46992 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.46931 * 299.99695 * 10 8 6 14 14 C 1.34775 * 120.00215 * 94.86730 * 4 3 2 15 15 O 1.21274 * 119.99955 * 355.16687 * 14 4 3 16 16 C 1.50698 * 120.00002 * 175.44080 * 14 4 3 17 17 H 1.09001 * 109.46894 * 317.15151 * 16 14 4 18 18 C 1.52997 * 109.47079 * 77.14581 * 16 14 4 19 19 C 1.52998 * 109.47056 * 183.22815 * 18 16 14 20 20 N 1.46898 * 109.47133 * 197.15123 * 16 14 4 21 21 C 1.47012 * 110.99649 * 296.36323 * 20 16 14 22 22 C 1.53101 * 109.25583 * 182.39449 * 21 20 16 23 23 O 1.43016 * 109.25878 * 303.14922 * 22 21 20 24 24 C 1.43018 * 113.73492 * 58.67209 * 23 22 21 25 25 H 1.09000 * 109.50659 * 61.26246 * 24 23 22 26 26 C 1.52997 * 109.50699 * 181.39327 * 24 23 22 27 27 C 1.53000 * 109.47355 * 294.78206 * 26 24 23 28 28 C 1.47014 * 111.00341 * 59.99971 * 20 16 14 29 29 H 1.07994 * 119.99567 * 180.02562 * 1 2 3 30 30 H 1.08001 * 120.00128 * 0.02562 * 1 2 3 31 31 H 1.08001 * 120.00128 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.46941 * 4.99741 * 3 2 1 33 33 H 1.08998 * 109.46558 * 244.99899 * 3 2 1 34 34 H 1.08993 * 109.47293 * 25.81223 * 5 4 3 35 35 H 1.09003 * 109.46563 * 145.81325 * 5 4 3 36 36 H 0.97000 * 119.99903 * 179.97438 * 9 8 6 37 37 H 1.08995 * 109.47912 * 303.23298 * 18 16 14 38 38 H 1.08999 * 109.46982 * 63.23380 * 18 16 14 39 39 H 1.08998 * 109.47787 * 300.00277 * 19 18 16 40 40 H 1.09004 * 109.47039 * 60.00816 * 19 18 16 41 41 H 1.09003 * 109.47034 * 180.02562 * 19 18 16 42 42 H 1.08998 * 109.51075 * 302.32430 * 21 20 16 43 43 H 1.09001 * 109.50894 * 62.46357 * 21 20 16 44 44 H 1.09001 * 109.50988 * 183.21877 * 22 21 20 45 45 H 1.08995 * 109.54511 * 63.11091 * 22 21 20 46 46 H 1.09003 * 109.47317 * 54.78487 * 26 24 23 47 47 H 1.09001 * 109.47722 * 174.78392 * 26 24 23 48 48 H 1.08996 * 109.47502 * 300.00302 * 27 26 24 49 49 H 1.09005 * 109.46708 * 59.99947 * 27 26 24 50 50 H 1.08994 * 109.47541 * 179.97438 * 27 26 24 51 51 H 1.08999 * 109.50347 * 297.54652 * 28 20 16 52 52 H 1.09007 * 109.50454 * 57.62567 * 28 20 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5292 1.7650 2.4516 6 6 2.8116 3.2349 2.6262 7 1 3.2890 3.7911 1.8331 8 6 2.4605 3.8698 3.7988 9 7 1.8786 3.1926 4.7645 10 14 2.8099 5.6920 4.0151 11 1 2.0972 6.4610 2.9634 12 1 2.3401 6.1306 5.3538 13 1 4.2707 5.9329 3.9003 14 6 4.2771 0.9583 0.9577 15 8 4.6407 0.5171 -0.1119 16 6 5.2586 1.0830 2.0943 17 1 5.1103 2.0376 2.5993 18 6 5.0364 -0.0593 3.0876 19 6 5.9781 0.1124 4.2812 20 7 6.6284 1.0150 1.5681 21 6 6.8926 -0.2947 0.9546 22 6 8.3455 -0.3434 0.4743 23 8 8.5786 0.7367 -0.4336 24 6 8.3316 2.0272 0.1313 25 1 9.0005 2.1886 0.9766 26 6 8.5762 3.1039 -0.9278 27 6 10.0568 3.1132 -1.3132 28 6 6.8786 2.0999 0.6081 29 1 -0.5399 -0.9353 0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8501 -0.9353 0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 1.4569 1.5885 2.5353 35 1 3.0518 1.2003 3.2238 36 1 1.6320 3.6392 5.5895 37 1 4.0033 -0.0433 3.4347 38 1 5.2405 -1.0114 2.5979 39 1 7.0112 0.0964 3.9343 40 1 5.7740 1.0646 4.7710 41 1 5.8201 -0.7017 4.9887 42 1 6.7259 -1.0815 1.6903 43 1 6.2238 -0.4408 0.1064 44 1 8.5298 -1.2908 -0.0322 45 1 9.0154 -0.2514 1.3292 46 1 7.9725 2.8898 -1.8098 47 1 8.2993 4.0785 -0.5259 48 1 10.6605 3.3272 -0.4313 49 1 10.3337 2.1385 -1.7151 50 1 10.2310 3.8799 -2.0680 51 1 6.2095 1.9920 -0.2455 52 1 6.7008 3.0611 1.0907 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359399659.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:41 Heat of formation + Delta-G solvation = -70.487317 kcal Electronic energy + Delta-G solvation = -30352.461407 eV Core-core repulsion = 26545.124781 eV Total energy + Delta-G solvation = -3807.336626 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.85727 -40.02519 -37.59660 -36.88051 -35.15369 -34.89677 -34.15119 -33.38316 -30.90983 -29.51030 -29.26579 -27.39128 -25.81508 -25.18329 -24.72059 -23.06835 -21.97457 -21.53387 -21.00431 -19.83818 -18.69338 -18.03954 -17.71330 -17.45444 -16.92165 -16.48082 -16.33239 -16.09848 -15.80838 -15.67794 -15.26374 -15.11223 -14.60305 -14.46813 -14.33407 -14.17920 -14.10940 -13.88253 -13.41152 -13.17901 -13.10685 -12.93330 -12.85332 -12.76682 -12.65519 -12.51376 -12.35593 -12.17470 -12.13827 -11.96343 -11.86535 -11.80672 -11.63382 -11.51137 -11.26271 -11.16092 -10.58563 -10.52440 -10.38828 -9.50177 -9.08240 -8.20083 -6.34032 1.24109 1.41532 1.42962 1.49634 1.65972 2.34667 2.48927 2.73621 2.89232 3.10322 3.61214 3.81455 3.92640 4.01377 4.05503 4.11012 4.13529 4.17104 4.21242 4.38049 4.41614 4.44841 4.50260 4.55401 4.61776 4.62219 4.72209 4.75541 4.78086 4.84146 4.91751 4.97035 4.98858 5.01880 5.09301 5.09723 5.17961 5.22729 5.28103 5.34579 5.43533 5.50189 5.58937 5.62263 5.72308 5.83835 5.91826 5.99595 6.05973 6.28373 6.53604 6.79233 7.26156 7.39393 8.85046 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.009762 B = 0.004884 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.451428 B = 5731.044151 C = 6736.499333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.178 4.178 3 C 0.140 3.860 4 N -0.592 5.592 5 C 0.247 3.753 6 C -0.546 4.546 7 H 0.048 0.952 8 C 0.030 3.970 9 N -0.913 5.913 10 Si 0.948 3.052 11 H -0.275 1.275 12 H -0.281 1.281 13 H -0.270 1.270 14 C 0.489 3.511 15 O -0.583 6.583 16 C 0.076 3.924 17 H 0.101 0.899 18 C -0.108 4.108 19 C -0.129 4.129 20 N -0.498 5.498 21 C -0.009 4.009 22 C 0.070 3.930 23 O -0.394 6.394 24 C 0.105 3.895 25 H 0.071 0.929 26 C -0.116 4.116 27 C -0.139 4.139 28 C 0.016 3.984 29 H 0.119 0.881 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.017 0.983 35 H 0.044 0.956 36 H 0.268 0.732 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.042 0.958 41 H 0.065 0.935 42 H 0.091 0.909 43 H 0.061 0.939 44 H 0.111 0.889 45 H 0.065 0.935 46 H 0.056 0.944 47 H 0.085 0.915 48 H 0.061 0.939 49 H 0.052 0.948 50 H 0.066 0.934 51 H 0.032 0.968 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.471 -4.975 -5.329 11.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.197 4.197 3 C 0.018 3.982 4 N -0.322 5.322 5 C 0.126 3.874 6 C -0.585 4.585 7 H 0.066 0.934 8 C -0.172 4.172 9 N -0.551 5.551 10 Si 0.774 3.226 11 H -0.201 1.201 12 H -0.206 1.206 13 H -0.196 1.196 14 C 0.277 3.723 15 O -0.466 6.466 16 C -0.036 4.036 17 H 0.118 0.882 18 C -0.146 4.146 19 C -0.186 4.186 20 N -0.221 5.221 21 C -0.137 4.137 22 C -0.006 4.006 23 O -0.314 6.314 24 C 0.047 3.953 25 H 0.089 0.911 26 C -0.154 4.154 27 C -0.197 4.197 28 C -0.113 4.113 29 H 0.137 0.863 30 H 0.121 0.879 31 H 0.117 0.883 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.035 0.965 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.061 0.939 41 H 0.084 0.916 42 H 0.109 0.891 43 H 0.079 0.921 44 H 0.129 0.871 45 H 0.083 0.917 46 H 0.074 0.926 47 H 0.103 0.897 48 H 0.080 0.920 49 H 0.071 0.929 50 H 0.085 0.915 51 H 0.050 0.950 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 9.961 -5.134 -5.462 12.466 hybrid contribution -1.250 1.027 -0.116 1.622 sum 8.710 -4.107 -5.578 11.129 Atomic orbital electron populations 1.24020 0.95006 1.03037 0.98346 1.23150 0.96702 0.97883 1.01955 1.20472 0.92118 0.95963 0.89694 1.48411 1.09073 1.62895 1.11778 1.19290 0.95013 0.94314 0.78742 1.21540 1.40704 0.95155 1.01084 0.93389 1.25535 0.94425 1.01868 0.95329 1.69987 1.40926 1.37865 1.06366 0.85753 0.78862 0.80644 0.77340 1.20060 1.20594 1.19552 1.22160 0.83608 0.76375 0.90155 1.90488 1.78267 1.48307 1.29552 1.21845 0.85860 1.02683 0.93235 0.88159 1.21582 1.00923 0.96078 0.96031 1.21536 0.99543 1.01414 0.96089 1.62736 1.20811 1.03661 1.34883 1.23236 0.98663 0.91632 1.00156 1.22717 0.93869 0.90458 0.93577 1.87921 1.88558 1.14771 1.40111 1.22151 0.92995 0.84064 0.96119 0.91090 1.21547 0.98834 0.97128 0.97911 1.21634 0.94203 1.02047 1.01779 1.22879 0.98346 0.95189 0.94865 0.86297 0.87947 0.88319 0.90537 0.91021 0.96475 0.93824 0.92282 0.91781 0.91170 0.91154 0.93901 0.91556 0.89057 0.92108 0.87114 0.91682 0.92557 0.89689 0.92037 0.92880 0.91529 0.95001 0.90813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.61 14.32 67.78 0.97 -3.64 16 2 C -0.18 -5.88 9.84 25.65 0.25 -5.63 16 3 C 0.14 5.33 5.85 85.64 0.50 5.84 16 4 N -0.59 -25.06 2.45 -830.52 -2.03 -27.10 16 5 C 0.25 11.61 4.84 85.63 0.41 12.03 16 6 C -0.55 -27.78 8.32 25.60 0.21 -27.57 16 7 H 0.05 2.50 7.81 -2.91 -0.02 2.48 16 8 C 0.03 1.52 5.46 84.66 0.46 1.98 16 9 N -0.91 -48.84 13.29 21.45 0.28 -48.56 16 10 Si 0.95 40.98 29.54 68.60 2.03 43.00 16 11 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 12 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 13 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 14 C 0.49 20.25 6.09 87.66 0.53 20.78 16 15 O -0.58 -25.55 11.46 -3.01 -0.03 -25.58 16 16 C 0.08 2.84 1.46 44.17 0.06 2.90 16 17 H 0.10 4.32 6.72 -2.39 -0.02 4.31 16 18 C -0.11 -3.60 4.77 30.59 0.15 -3.46 16 19 C -0.13 -3.71 9.79 71.98 0.70 -3.01 16 20 N -0.50 -16.61 4.13 -874.39 -3.61 -20.22 16 21 C -0.01 -0.29 4.90 86.32 0.42 0.14 16 22 C 0.07 1.81 7.01 72.02 0.50 2.32 16 23 O -0.39 -11.74 10.02 -148.98 -1.49 -13.23 16 24 C 0.10 2.95 2.80 30.62 0.09 3.04 16 25 H 0.07 1.87 8.14 -2.39 -0.02 1.86 16 26 C -0.12 -2.83 5.64 30.59 0.17 -2.66 16 27 C -0.14 -2.77 9.81 71.98 0.71 -2.06 16 28 C 0.02 0.53 4.55 86.31 0.39 0.93 16 29 H 0.12 2.69 8.06 -2.91 -0.02 2.67 16 30 H 0.10 2.74 7.84 -2.91 -0.02 2.72 16 31 H 0.10 3.33 8.06 -2.91 -0.02 3.31 16 32 H 0.08 2.89 7.76 -2.39 -0.02 2.87 16 33 H 0.07 2.79 7.35 -2.39 -0.02 2.77 16 34 H 0.02 0.87 8.04 -2.39 -0.02 0.85 16 35 H 0.04 2.11 4.54 -2.39 -0.01 2.09 16 36 H 0.27 13.68 8.31 -92.71 -0.77 12.91 16 37 H 0.06 2.37 5.62 -2.39 -0.01 2.36 16 38 H 0.07 2.15 6.12 -2.39 -0.01 2.14 16 39 H 0.07 1.89 7.70 -2.39 -0.02 1.87 16 40 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 41 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 42 H 0.09 2.52 6.04 -2.39 -0.01 2.51 16 43 H 0.06 2.28 5.19 -2.39 -0.01 2.27 16 44 H 0.11 2.37 8.14 -2.39 -0.02 2.35 16 45 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.05 1.14 7.83 -2.38 -0.02 1.12 16 50 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 51 H 0.03 1.28 6.07 -2.39 -0.01 1.26 16 52 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 Total: -1.00 -58.07 398.12 2.56 -55.51 By element: Atomic # 1 Polarization: 33.38 SS G_CDS: 0.87 Total: 34.26 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: 6.55 Total: 1.92 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -5.36 Total: -95.88 kcal Atomic # 8 Polarization: -37.29 SS G_CDS: -1.53 Total: -38.81 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.00 kcal Total: -58.07 2.56 -55.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359399659.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.977 kcal (2) G-P(sol) polarization free energy of solvation -58.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds