Wall clock time and date at job start Tue Mar 31 2020 15:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47096 * 2 1 4 4 H 1.08999 * 109.47443 * 54.99718 * 3 2 1 5 5 N 1.46499 * 109.46861 * 294.99552 * 3 2 1 6 6 C 1.34777 * 120.00065 * 85.00523 * 5 3 2 7 7 O 1.21343 * 120.00084 * 359.97438 * 6 5 3 8 8 C 1.49454 * 120.00164 * 180.02562 * 6 5 3 9 9 O 1.21353 * 119.99759 * 359.97438 * 8 6 5 10 10 N 1.34773 * 120.00135 * 180.27489 * 8 6 5 11 11 C 1.46500 * 120.00432 * 179.72278 * 10 8 6 12 12 C 1.52991 * 109.47288 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47201 * 299.99711 * 12 11 10 14 14 C 1.52995 * 109.47457 * 60.00162 * 12 11 10 15 15 C 1.50707 * 109.46959 * 180.02562 * 12 11 10 16 16 H 1.07992 * 119.99760 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99951 * 179.97438 * 15 12 11 18 18 N 1.31514 * 119.99843 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 119.99948 * 179.97438 * 17 15 12 20 20 H 1.48496 * 109.47031 * 60.00139 * 19 17 15 21 21 H 1.48504 * 109.46971 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47038 * 300.00115 * 19 17 15 23 23 C 1.53000 * 109.47287 * 175.00164 * 3 2 1 24 24 H 1.09003 * 115.55008 * 34.40729 * 23 3 2 25 25 C 1.53004 * 117.49623 * 248.74263 * 23 3 2 26 26 C 1.52996 * 117.50195 * 180.08604 * 23 3 2 27 27 C 1.53000 * 117.50087 * 214.97300 * 26 23 3 28 28 C 1.53001 * 117.49829 * 359.97364 * 26 23 3 29 29 H 1.09004 * 109.47187 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47548 * 300.00229 * 1 2 3 31 31 H 1.09003 * 109.47065 * 60.00532 * 1 2 3 32 32 H 1.09002 * 109.47233 * 239.99450 * 2 1 3 33 33 H 1.09004 * 109.46852 * 119.99977 * 2 1 3 34 34 H 0.97000 * 120.00380 * 264.99719 * 5 3 2 35 35 H 0.97001 * 120.00114 * 359.71542 * 10 8 6 36 36 H 1.09000 * 109.46865 * 300.00301 * 11 10 8 37 37 H 1.09001 * 109.46879 * 59.99699 * 11 10 8 38 38 H 1.09003 * 109.47008 * 60.00269 * 13 12 11 39 39 H 1.09001 * 109.47349 * 180.02562 * 13 12 11 40 40 H 1.09001 * 109.47429 * 300.00297 * 13 12 11 41 41 H 1.08995 * 109.47164 * 59.99432 * 14 12 11 42 42 H 1.09001 * 109.47294 * 180.02562 * 14 12 11 43 43 H 1.09003 * 109.46864 * 299.99799 * 14 12 11 44 44 H 0.97000 * 120.00287 * 179.97438 * 18 17 15 45 45 H 1.09004 * 117.49965 * 0.02562 * 25 23 3 46 46 H 1.09001 * 117.49407 * 145.01444 * 25 23 3 47 47 H 1.09004 * 109.46490 * 59.99983 * 27 26 23 48 48 H 1.09000 * 109.47486 * 179.97438 * 27 26 23 49 49 H 1.08991 * 109.47245 * 300.00277 * 27 26 23 50 50 H 1.08996 * 109.47374 * 59.99778 * 28 26 23 51 51 H 1.08997 * 109.47473 * 180.02562 * 28 26 23 52 52 H 1.09002 * 109.46999 * 299.99660 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6525 2.0973 -1.2519 6 6 0.4352 2.6643 -1.3671 7 8 -0.3400 2.6319 -0.4341 8 6 0.0397 3.3319 -2.6444 9 8 0.8147 3.3639 -3.5776 10 7 -1.1755 3.9037 -2.7577 11 6 -1.5610 4.5634 -4.0077 12 6 -2.9780 5.1241 -3.8725 13 6 -3.9524 3.9820 -3.5771 14 6 -3.0183 6.1379 -2.7274 15 6 -3.3748 5.8022 -5.1586 16 1 -2.6850 5.8307 -5.9890 17 6 -4.6184 6.3861 -5.2749 18 7 -5.4581 6.3518 -4.2633 19 14 -5.1099 7.2273 -6.8688 20 1 -5.0701 6.2434 -7.9803 21 1 -6.4854 7.7714 -6.7376 22 1 -4.1646 8.3362 -7.1552 23 6 3.5648 1.4443 0.1257 24 1 4.0781 0.6177 -0.3657 25 6 4.1655 1.9738 1.4295 26 6 4.2703 2.8017 0.1463 27 6 5.6426 2.8950 -0.5239 28 6 3.3971 4.0535 0.0391 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.2720 2.1230 -1.9978 35 1 -1.7949 3.8783 -2.0117 36 1 -0.8665 5.3767 -4.2184 37 1 -1.5327 3.8410 -4.8235 38 1 -3.6656 3.4912 -2.6471 39 1 -4.9620 4.3814 -3.4812 40 1 -3.9237 3.2598 -4.3930 41 1 -2.3242 6.9515 -2.9378 42 1 -4.0280 6.5370 -2.6307 43 1 -2.7315 5.6470 -1.7973 44 1 -6.3329 6.7629 -4.3450 45 1 3.4743 2.3204 2.1978 46 1 5.0741 1.4957 1.7955 47 1 5.5503 2.6343 -1.5783 48 1 6.0227 3.9126 -0.4335 49 1 6.3319 2.2047 -0.0380 50 1 2.6964 4.0803 0.8736 51 1 4.0292 4.9410 0.0663 52 1 2.8435 4.0309 -0.8996 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422476805.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:22 Heat of formation + Delta-G solvation = -66.803166 kcal Electronic energy + Delta-G solvation = -28920.989891 eV Core-core repulsion = 25113.813021 eV Total energy + Delta-G solvation = -3807.176869 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.75679 -39.31098 -38.09766 -36.46426 -35.33594 -33.37228 -32.39495 -30.88279 -29.80869 -27.83371 -27.07048 -25.97794 -25.72160 -25.21514 -23.29211 -22.19229 -20.94834 -20.07962 -19.25117 -18.90734 -17.98223 -16.82584 -16.25500 -15.86848 -15.52959 -15.11834 -14.94047 -14.69780 -14.51384 -14.31338 -13.94204 -13.63449 -13.25767 -13.13277 -12.99120 -12.92756 -12.62758 -12.52882 -12.22815 -12.21920 -12.07720 -11.69164 -11.55575 -11.39514 -11.33682 -11.17820 -11.15336 -10.92193 -10.86180 -10.74128 -10.43965 -10.39613 -10.19973 -9.89727 -9.64997 -9.51062 -9.18526 -9.05892 -8.80750 -8.58619 -8.36719 -6.02550 -4.13474 1.70428 2.55165 3.29634 3.34306 3.36427 3.39599 3.51570 4.02097 4.12112 4.39204 4.41033 4.56536 4.79514 4.79694 4.84465 4.96815 4.99901 5.23972 5.25436 5.36640 5.40272 5.47011 5.55408 5.63997 5.66867 5.70548 5.76170 5.87225 5.88470 5.93979 6.01655 6.12080 6.12520 6.23918 6.28117 6.36534 6.47318 6.64423 6.83664 6.85171 6.94464 7.00471 7.18638 7.33826 7.55243 7.67820 7.76130 8.00185 8.01562 8.13625 8.33797 8.42798 8.86581 9.52395 10.98817 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.021755 B = 0.002656 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.756800 B =10538.915060 C =11139.572602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.130 4.130 3 C 0.176 3.824 4 H 0.091 0.909 5 N -0.695 5.695 6 C 0.507 3.493 7 O -0.516 6.516 8 C 0.493 3.507 9 O -0.536 6.536 10 N -0.681 5.681 11 C 0.128 3.872 12 C 0.057 3.943 13 C -0.134 4.134 14 C -0.133 4.133 15 C -0.508 4.508 16 H 0.058 0.942 17 C 0.067 3.933 18 N -0.885 5.885 19 Si 0.894 3.106 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.163 4.163 24 H 0.111 0.889 25 C -0.160 4.160 26 C -0.117 4.117 27 C -0.116 4.116 28 C -0.120 4.120 29 H 0.047 0.953 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.411 0.589 35 H 0.410 0.590 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.008 0.992 39 H 0.087 0.913 40 H 0.027 0.973 41 H 0.027 0.973 42 H 0.087 0.913 43 H 0.008 0.992 44 H 0.261 0.739 45 H 0.096 0.904 46 H 0.096 0.904 47 H 0.061 0.939 48 H 0.061 0.939 49 H 0.056 0.944 50 H 0.056 0.944 51 H 0.059 0.941 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.727 -10.186 11.154 23.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.169 4.169 3 C 0.072 3.928 4 H 0.109 0.891 5 N -0.349 5.349 6 C 0.288 3.712 7 O -0.392 6.392 8 C 0.273 3.727 9 O -0.415 6.415 10 N -0.332 5.332 11 C 0.006 3.994 12 C 0.056 3.944 13 C -0.191 4.191 14 C -0.191 4.191 15 C -0.547 4.547 16 H 0.076 0.924 17 C -0.134 4.134 18 N -0.523 5.523 19 Si 0.722 3.278 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.182 4.182 24 H 0.129 0.871 25 C -0.197 4.197 26 C -0.117 4.117 27 C -0.173 4.173 28 C -0.177 4.177 29 H 0.066 0.934 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.248 0.752 35 H 0.248 0.752 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.027 0.973 39 H 0.106 0.894 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.105 0.895 43 H 0.027 0.973 44 H 0.071 0.929 45 H 0.115 0.885 46 H 0.115 0.885 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.075 0.925 50 H 0.075 0.925 51 H 0.078 0.922 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 17.481 -10.100 11.200 23.087 hybrid contribution -0.274 0.359 -0.864 0.975 sum 17.207 -9.740 10.336 22.311 Atomic orbital electron populations 1.21828 0.94642 1.00847 1.03202 1.21937 0.97134 0.95510 1.02306 1.20623 0.91527 0.93514 0.87106 0.89054 1.45845 1.16022 1.55972 1.17023 1.20395 0.82552 0.79435 0.88771 1.90756 1.50736 1.57706 1.39974 1.20054 0.83720 0.81068 0.87901 1.90723 1.51301 1.59403 1.40030 1.46217 1.14836 1.53211 1.18952 1.21928 0.98994 0.95554 0.82891 1.18362 0.87545 0.92688 0.95778 1.21858 1.03978 0.97084 0.96207 1.21851 1.03543 0.98581 0.95112 1.20920 1.00194 1.35580 0.98008 0.92418 1.24879 0.96312 0.95816 0.96441 1.69797 1.07760 1.44567 1.30158 0.86619 0.77512 0.79855 0.83779 1.20274 1.21314 1.20276 1.22721 0.93957 0.98351 1.03156 0.87139 1.23291 1.02644 1.03096 0.90703 1.21582 0.97257 0.92195 1.00660 1.21372 0.93471 1.02132 1.00312 1.21449 0.98647 0.94966 1.02632 0.93397 0.92017 0.92455 0.91727 0.90940 0.75247 0.75224 0.92067 0.92080 0.97277 0.89443 0.95373 0.95373 0.89458 0.97286 0.92879 0.88548 0.88514 0.91987 0.91951 0.92539 0.92499 0.92191 0.91533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.51 37.16 0.32 -1.36 16 2 C -0.13 -1.19 5.59 -26.73 -0.15 -1.34 16 3 C 0.18 1.69 1.79 -67.93 -0.12 1.57 16 4 H 0.09 1.01 7.21 -51.93 -0.37 0.63 16 5 N -0.70 -7.94 3.08 -54.24 -0.17 -8.11 16 6 C 0.51 7.46 6.37 -11.58 -0.07 7.38 16 7 O -0.52 -8.35 13.61 5.50 0.07 -8.27 16 8 C 0.49 8.54 7.89 -11.59 -0.09 8.45 16 9 O -0.54 -10.19 16.48 5.49 0.09 -10.09 16 10 N -0.68 -12.56 4.95 -60.73 -0.30 -12.86 16 11 C 0.13 2.68 4.50 -4.05 -0.02 2.66 16 12 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 13 C -0.13 -3.06 8.08 37.16 0.30 -2.76 16 14 C -0.13 -3.05 8.08 37.15 0.30 -2.75 16 15 C -0.51 -13.20 8.01 -34.44 -0.28 -13.48 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 17 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 18 N -0.88 -23.60 9.35 55.43 0.52 -23.09 16 19 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 23 C -0.16 -1.25 4.94 -90.62 -0.45 -1.70 16 24 H 0.11 0.76 8.11 -51.93 -0.42 0.33 16 25 C -0.16 -1.13 9.47 -26.69 -0.25 -1.38 16 26 C -0.12 -0.93 2.67 -154.48 -0.41 -1.34 16 27 C -0.12 -0.80 9.85 37.16 0.37 -0.44 16 28 C -0.12 -1.15 8.69 37.16 0.32 -0.83 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.75 7.85 -51.93 -0.41 0.34 16 31 H 0.06 0.78 5.64 -51.93 -0.29 0.49 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.41 4.49 8.01 -40.82 -0.33 4.16 16 35 H 0.41 7.47 5.63 -40.82 -0.23 7.24 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 39 H 0.09 2.21 6.07 -51.93 -0.32 1.89 16 40 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 43 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 44 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 45 H 0.10 0.70 7.96 -51.93 -0.41 0.28 16 46 H 0.10 0.57 8.05 -51.93 -0.42 0.15 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.42 7.92 -51.93 -0.41 0.01 16 49 H 0.06 0.34 7.90 -51.93 -0.41 -0.07 16 50 H 0.06 0.57 7.77 -51.93 -0.40 0.17 16 51 H 0.06 0.53 7.92 -51.93 -0.41 0.12 16 52 H 0.07 0.74 6.49 -51.93 -0.34 0.40 16 LS Contribution 401.96 15.07 6.06 6.06 Total: -1.00 -27.34 401.96 -8.28 -35.62 By element: Atomic # 1 Polarization: 18.69 SS G_CDS: -9.12 Total: 9.56 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: -0.41 Total: -4.39 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 0.05 Total: -44.06 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: 0.17 Total: -18.37 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -27.34 -8.28 -35.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422476805.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.185 kcal (2) G-P(sol) polarization free energy of solvation -27.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds