Wall clock time and date at job start Tue Mar 31 2020 15:25:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47096 * 2 1 4 4 H 1.08999 * 109.47443 * 54.99718 * 3 2 1 5 5 N 1.46499 * 109.46861 * 294.99552 * 3 2 1 6 6 C 1.34777 * 120.00065 * 85.00523 * 5 3 2 7 7 O 1.21343 * 120.00084 * 359.97438 * 6 5 3 8 8 C 1.49454 * 120.00164 * 180.02562 * 6 5 3 9 9 O 1.21353 * 119.99759 * 359.97438 * 8 6 5 10 10 N 1.34773 * 120.00135 * 180.27489 * 8 6 5 11 11 C 1.46500 * 120.00432 * 179.72278 * 10 8 6 12 12 C 1.52991 * 109.47288 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47201 * 299.99711 * 12 11 10 14 14 C 1.52995 * 109.47457 * 60.00162 * 12 11 10 15 15 C 1.50707 * 109.46959 * 180.02562 * 12 11 10 16 16 H 1.07992 * 119.99760 * 359.97438 * 15 12 11 17 17 C 1.37880 * 119.99951 * 179.97438 * 15 12 11 18 18 N 1.31514 * 119.99843 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 119.99948 * 179.97438 * 17 15 12 20 20 H 1.48496 * 109.47031 * 60.00139 * 19 17 15 21 21 H 1.48504 * 109.46971 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47038 * 300.00115 * 19 17 15 23 23 C 1.53000 * 109.47287 * 175.00164 * 3 2 1 24 24 H 1.09003 * 115.55008 * 34.40729 * 23 3 2 25 25 C 1.53004 * 117.49623 * 248.74263 * 23 3 2 26 26 C 1.52996 * 117.50195 * 180.08604 * 23 3 2 27 27 C 1.53000 * 117.50087 * 214.97300 * 26 23 3 28 28 C 1.53001 * 117.49829 * 359.97364 * 26 23 3 29 29 H 1.09004 * 109.47187 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47548 * 300.00229 * 1 2 3 31 31 H 1.09003 * 109.47065 * 60.00532 * 1 2 3 32 32 H 1.09002 * 109.47233 * 239.99450 * 2 1 3 33 33 H 1.09004 * 109.46852 * 119.99977 * 2 1 3 34 34 H 0.97000 * 120.00380 * 264.99719 * 5 3 2 35 35 H 0.97001 * 120.00114 * 359.71542 * 10 8 6 36 36 H 1.09000 * 109.46865 * 300.00301 * 11 10 8 37 37 H 1.09001 * 109.46879 * 59.99699 * 11 10 8 38 38 H 1.09003 * 109.47008 * 60.00269 * 13 12 11 39 39 H 1.09001 * 109.47349 * 180.02562 * 13 12 11 40 40 H 1.09001 * 109.47429 * 300.00297 * 13 12 11 41 41 H 1.08995 * 109.47164 * 59.99432 * 14 12 11 42 42 H 1.09001 * 109.47294 * 180.02562 * 14 12 11 43 43 H 1.09003 * 109.46864 * 299.99799 * 14 12 11 44 44 H 0.97000 * 120.00287 * 179.97438 * 18 17 15 45 45 H 1.09004 * 117.49965 * 0.02562 * 25 23 3 46 46 H 1.09001 * 117.49407 * 145.01444 * 25 23 3 47 47 H 1.09004 * 109.46490 * 59.99983 * 27 26 23 48 48 H 1.09000 * 109.47486 * 179.97438 * 27 26 23 49 49 H 1.08991 * 109.47245 * 300.00277 * 27 26 23 50 50 H 1.08996 * 109.47374 * 59.99778 * 28 26 23 51 51 H 1.08997 * 109.47473 * 180.02562 * 28 26 23 52 52 H 1.09002 * 109.46999 * 299.99660 * 28 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6525 2.0973 -1.2519 6 6 0.4352 2.6643 -1.3671 7 8 -0.3400 2.6319 -0.4341 8 6 0.0397 3.3319 -2.6444 9 8 0.8147 3.3639 -3.5776 10 7 -1.1755 3.9037 -2.7577 11 6 -1.5610 4.5634 -4.0077 12 6 -2.9780 5.1241 -3.8725 13 6 -3.9524 3.9820 -3.5771 14 6 -3.0183 6.1379 -2.7274 15 6 -3.3748 5.8022 -5.1586 16 1 -2.6850 5.8307 -5.9890 17 6 -4.6184 6.3861 -5.2749 18 7 -5.4581 6.3518 -4.2633 19 14 -5.1099 7.2273 -6.8688 20 1 -5.0701 6.2434 -7.9803 21 1 -6.4854 7.7714 -6.7376 22 1 -4.1646 8.3362 -7.1552 23 6 3.5648 1.4443 0.1257 24 1 4.0781 0.6177 -0.3657 25 6 4.1655 1.9738 1.4295 26 6 4.2703 2.8017 0.1463 27 6 5.6426 2.8950 -0.5239 28 6 3.3971 4.0535 0.0391 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.2720 2.1230 -1.9978 35 1 -1.7949 3.8783 -2.0117 36 1 -0.8665 5.3767 -4.2184 37 1 -1.5327 3.8410 -4.8235 38 1 -3.6656 3.4912 -2.6471 39 1 -4.9620 4.3814 -3.4812 40 1 -3.9237 3.2598 -4.3930 41 1 -2.3242 6.9515 -2.9378 42 1 -4.0280 6.5370 -2.6307 43 1 -2.7315 5.6470 -1.7973 44 1 -6.3329 6.7629 -4.3450 45 1 3.4743 2.3204 2.1978 46 1 5.0741 1.4957 1.7955 47 1 5.5503 2.6343 -1.5783 48 1 6.0227 3.9126 -0.4335 49 1 6.3319 2.2047 -0.0380 50 1 2.6964 4.0803 0.8736 51 1 4.0292 4.9410 0.0663 52 1 2.8435 4.0309 -0.8996 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000422476805.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:25:21 Heat of formation + Delta-G solvation = -81.107818 kcal Electronic energy + Delta-G solvation = -28921.610187 eV Core-core repulsion = 25113.813021 eV Total energy + Delta-G solvation = -3807.797166 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.91080 -40.38908 -39.20823 -38.19015 -36.29031 -35.03204 -33.38211 -32.74335 -30.47909 -28.59880 -28.13585 -27.60108 -27.44472 -26.99510 -24.63985 -22.91924 -21.78489 -21.35742 -20.70439 -20.00972 -19.20330 -18.05338 -17.74382 -17.29934 -16.84010 -16.59713 -16.22870 -15.90403 -15.57868 -15.30282 -15.06482 -14.76330 -14.64122 -14.55732 -14.11486 -14.02947 -13.82321 -13.66293 -13.23810 -13.21514 -13.12793 -12.99235 -12.78550 -12.69348 -12.68775 -12.62898 -12.38888 -12.28343 -12.18969 -12.12537 -11.91949 -11.71246 -11.51752 -11.30830 -11.09125 -10.76277 -10.64225 -10.47523 -10.41212 -10.13357 -9.97018 -8.01983 -6.18762 0.40378 1.36946 1.45687 1.47024 1.53580 2.19785 2.44301 2.58550 2.96440 3.21801 3.44653 3.51649 3.76878 3.95661 4.09346 4.16629 4.20188 4.29153 4.34036 4.46042 4.46757 4.66606 4.68305 4.74894 4.81068 4.91090 4.91656 4.95517 5.02300 5.02522 5.05079 5.05359 5.08193 5.10746 5.11786 5.15789 5.21950 5.29213 5.30703 5.36558 5.44373 5.46860 5.47499 5.63600 5.66591 6.01511 6.10074 6.18046 6.40187 6.43700 6.78865 6.86492 7.00977 7.49282 8.97147 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.021755 B = 0.002656 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.756800 B =10538.915060 C =11139.572602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C 0.176 3.824 4 H 0.078 0.922 5 N -0.677 5.677 6 C 0.514 3.486 7 O -0.533 6.533 8 C 0.494 3.506 9 O -0.553 6.553 10 N -0.682 5.682 11 C 0.144 3.856 12 C 0.052 3.948 13 C -0.124 4.124 14 C -0.123 4.123 15 C -0.528 4.528 16 H 0.051 0.949 17 C 0.027 3.973 18 N -0.901 5.901 19 Si 0.948 3.052 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C -0.159 4.159 24 H 0.128 0.872 25 C -0.148 4.148 26 C -0.126 4.126 27 C -0.114 4.114 28 C -0.119 4.119 29 H 0.058 0.942 30 H 0.048 0.952 31 H 0.031 0.969 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.416 0.584 35 H 0.412 0.588 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.029 0.971 39 H 0.064 0.936 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.063 0.937 43 H 0.029 0.971 44 H 0.260 0.740 45 H 0.093 0.907 46 H 0.116 0.884 47 H 0.059 0.941 48 H 0.060 0.940 49 H 0.070 0.930 50 H 0.047 0.953 51 H 0.062 0.938 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.638 -11.452 11.876 25.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.163 4.163 3 C 0.073 3.927 4 H 0.096 0.904 5 N -0.329 5.329 6 C 0.294 3.706 7 O -0.410 6.410 8 C 0.274 3.726 9 O -0.432 6.432 10 N -0.334 5.334 11 C 0.021 3.979 12 C 0.052 3.948 13 C -0.182 4.182 14 C -0.181 4.181 15 C -0.567 4.567 16 H 0.069 0.931 17 C -0.173 4.173 18 N -0.540 5.540 19 Si 0.775 3.225 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.178 4.178 24 H 0.146 0.854 25 C -0.185 4.185 26 C -0.126 4.126 27 C -0.171 4.171 28 C -0.176 4.176 29 H 0.077 0.923 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.253 0.747 35 H 0.250 0.750 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.082 0.918 40 H 0.042 0.958 41 H 0.042 0.958 42 H 0.082 0.918 43 H 0.048 0.952 44 H 0.070 0.930 45 H 0.111 0.889 46 H 0.134 0.866 47 H 0.078 0.922 48 H 0.079 0.921 49 H 0.089 0.911 50 H 0.066 0.934 51 H 0.082 0.918 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 19.428 -11.385 11.932 25.484 hybrid contribution -0.830 0.741 -1.056 1.534 sum 18.597 -10.644 10.877 24.030 Atomic orbital electron populations 1.21797 0.96407 1.00944 1.01297 1.21921 0.95392 0.95130 1.03849 1.20769 0.93081 0.93509 0.85375 0.90431 1.45840 1.14639 1.54550 1.17916 1.19849 0.83513 0.79811 0.87379 1.90759 1.51478 1.58723 1.40019 1.20516 0.82918 0.80389 0.88745 1.90708 1.51605 1.59874 1.40982 1.46065 1.15560 1.53632 1.18137 1.21526 0.97478 0.95140 0.83785 1.18353 0.88813 0.92779 0.94902 1.21707 1.02552 0.96837 0.97054 1.21698 1.01931 0.98448 0.96015 1.21227 1.00378 1.36103 0.98989 0.93058 1.25496 0.96405 0.96433 0.98945 1.69917 1.07803 1.44910 1.31339 0.85771 0.77128 0.78909 0.80729 1.20083 1.21064 1.20083 1.22692 0.92286 0.98679 1.04104 0.85422 1.23359 1.03079 1.02013 0.90075 1.21590 0.97570 0.91469 1.02014 1.21364 0.92970 1.02507 1.00215 1.21409 0.98699 0.96367 1.01151 0.92311 0.93254 0.94977 0.90787 0.88681 0.74728 0.74981 0.92861 0.92890 0.95228 0.91754 0.95820 0.95814 0.91775 0.95240 0.93018 0.88901 0.86581 0.92203 0.92100 0.91086 0.93429 0.91850 0.93399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.17 8.51 71.98 0.61 -2.56 16 2 C -0.12 -1.98 5.59 30.59 0.17 -1.81 16 3 C 0.18 3.06 1.79 44.99 0.08 3.14 16 4 H 0.08 1.62 7.21 -2.39 -0.02 1.61 16 5 N -0.68 -14.80 3.08 -443.88 -1.37 -16.16 16 6 C 0.51 14.92 6.37 87.27 0.56 15.48 16 7 O -0.53 -17.11 13.61 -3.23 -0.04 -17.16 16 8 C 0.49 17.01 7.89 87.27 0.69 17.70 16 9 O -0.55 -20.85 16.48 -3.26 -0.05 -20.91 16 10 N -0.68 -25.10 4.95 -464.42 -2.30 -27.40 16 11 C 0.14 6.04 4.50 86.38 0.39 6.43 16 12 C 0.05 2.44 0.50 -52.93 -0.03 2.41 16 13 C -0.12 -5.69 8.08 71.98 0.58 -5.11 16 14 C -0.12 -5.66 8.08 71.98 0.58 -5.07 16 15 C -0.53 -27.70 8.01 25.60 0.21 -27.49 16 16 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 17 C 0.03 1.42 5.15 84.66 0.44 1.86 16 18 N -0.90 -48.58 9.35 21.45 0.20 -48.37 16 19 Si 0.95 42.38 29.54 68.60 2.03 44.41 16 20 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 21 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 22 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 23 C -0.16 -2.00 4.94 -10.79 -0.05 -2.06 16 24 H 0.13 1.25 8.11 -2.39 -0.02 1.23 16 25 C -0.15 -1.66 9.47 30.62 0.29 -1.37 16 26 C -0.13 -1.76 2.67 -52.16 -0.14 -1.90 16 27 C -0.11 -1.31 9.85 71.98 0.71 -0.60 16 28 C -0.12 -2.20 8.69 71.98 0.63 -1.57 16 29 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.05 1.17 7.85 -2.39 -0.02 1.15 16 31 H 0.03 0.85 5.64 -2.39 -0.01 0.83 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.42 8.56 8.01 -92.71 -0.74 7.82 16 35 H 0.41 14.86 5.63 -92.71 -0.52 14.34 16 36 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.03 1.19 6.86 -2.39 -0.02 1.18 16 39 H 0.06 3.27 6.07 -2.39 -0.01 3.26 16 40 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 43 H 0.03 1.19 6.86 -2.39 -0.02 1.17 16 44 H 0.26 13.56 8.31 -92.71 -0.77 12.79 16 45 H 0.09 1.14 7.96 -2.38 -0.02 1.12 16 46 H 0.12 0.90 8.05 -2.39 -0.02 0.89 16 47 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 48 H 0.06 0.72 7.92 -2.39 -0.02 0.70 16 49 H 0.07 0.62 7.90 -2.39 -0.02 0.60 16 50 H 0.05 0.94 7.77 -2.39 -0.02 0.92 16 51 H 0.06 1.09 7.92 -2.39 -0.02 1.07 16 52 H 0.05 1.05 6.49 -2.39 -0.02 1.03 16 Total: -1.00 -58.46 401.96 3.82 -54.64 By element: Atomic # 1 Polarization: 33.83 SS G_CDS: -0.35 Total: 33.47 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 5.71 Total: -2.53 kcal Atomic # 7 Polarization: -88.47 SS G_CDS: -3.47 Total: -91.93 kcal Atomic # 8 Polarization: -37.97 SS G_CDS: -0.10 Total: -38.06 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -58.46 3.82 -54.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422476805.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.468 kcal (2) G-P(sol) polarization free energy of solvation -58.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds