Wall clock time and date at job start Tue Mar 31 2020 13:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46974 * 2 1 4 4 C 1.50701 * 109.46908 * 119.99892 * 2 1 3 5 5 O 1.21283 * 120.00025 * 350.22522 * 4 2 1 6 6 N 1.34774 * 120.00131 * 170.22972 * 4 2 1 7 7 C 1.46923 * 120.62987 * 4.48565 * 6 4 2 8 8 C 1.53196 * 108.77618 * 126.39413 * 7 6 4 9 9 C 1.53040 * 109.30999 * 54.63552 * 8 7 6 10 10 C 1.53042 * 109.54066 * 298.63472 * 9 8 7 11 11 C 1.46930 * 120.63059 * 184.49047 * 6 4 2 12 12 H 1.09001 * 109.70163 * 113.74966 * 11 6 4 13 13 C 1.50696 * 109.58633 * 353.39262 * 11 6 4 14 14 O 1.21276 * 120.00403 * 293.25236 * 13 11 6 15 15 N 1.34783 * 119.99735 * 113.25525 * 13 11 6 16 16 C 1.46494 * 119.99732 * 179.97438 * 15 13 11 17 17 C 1.52998 * 109.47416 * 180.02562 * 16 15 13 18 18 C 1.53002 * 109.47139 * 300.00407 * 17 16 15 19 19 C 1.53009 * 109.46985 * 59.99628 * 17 16 15 20 20 C 1.50693 * 109.47783 * 180.02562 * 17 16 15 21 21 H 1.08005 * 119.99586 * 359.12078 * 20 17 16 22 22 C 1.37873 * 120.00335 * 179.12369 * 20 17 16 23 23 N 1.31515 * 120.00234 * 2.92857 * 22 20 17 24 24 Si 1.86806 * 120.00209 * 182.92904 * 22 20 17 25 25 H 1.48497 * 109.46990 * 94.98708 * 24 22 20 26 26 H 1.48491 * 109.47117 * 214.99260 * 24 22 20 27 27 H 1.48502 * 109.46755 * 334.99255 * 24 22 20 28 28 H 1.08997 * 109.47293 * 300.00448 * 1 2 3 29 29 H 1.09004 * 109.46729 * 60.00000 * 1 2 3 30 30 H 1.08993 * 109.47033 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47293 * 239.99552 * 2 1 3 32 32 H 1.08993 * 109.47101 * 294.37585 * 3 2 1 33 33 H 1.08995 * 109.47339 * 54.38624 * 3 2 1 34 34 H 1.09007 * 109.46931 * 174.38149 * 3 2 1 35 35 H 1.09003 * 109.58540 * 6.61040 * 7 6 4 36 36 H 1.09000 * 109.58938 * 246.18224 * 7 6 4 37 37 H 1.08999 * 109.49614 * 294.68807 * 8 7 6 38 38 H 1.08995 * 109.52541 * 174.60205 * 8 7 6 39 39 H 1.09003 * 109.45936 * 178.61747 * 9 8 7 40 40 H 1.09005 * 109.46130 * 58.65554 * 9 8 7 41 41 H 1.09002 * 109.49587 * 301.41488 * 10 9 8 42 42 H 1.08997 * 109.52364 * 181.33379 * 10 9 8 43 43 H 0.96996 * 119.99800 * 0.02562 * 15 13 11 44 44 H 1.09010 * 109.47462 * 300.00136 * 16 15 13 45 45 H 1.08999 * 109.47645 * 59.99932 * 16 15 13 46 46 H 1.09003 * 109.47162 * 64.77499 * 18 17 16 47 47 H 1.08992 * 109.47585 * 184.77789 * 18 17 16 48 48 H 1.09006 * 109.46642 * 304.78123 * 18 17 16 49 49 H 1.09002 * 109.46414 * 60.00671 * 19 17 16 50 50 H 1.08998 * 109.46938 * 180.02562 * 19 17 16 51 51 H 1.08994 * 109.47164 * 300.00712 * 19 17 16 52 52 H 0.96993 * 120.00449 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.2585 -1.0143 2.1136 6 7 3.3414 -1.0079 1.3497 7 6 4.3060 -0.5606 0.3358 8 6 5.4368 0.2019 1.0336 9 6 6.0402 -0.6793 2.1297 10 6 4.9670 -1.0097 3.1696 11 6 3.8309 -1.7859 2.4960 12 1 4.2015 -2.7519 2.1531 13 6 2.7092 -1.9954 3.4803 14 8 2.2445 -1.0496 4.0806 15 7 2.2225 -3.2341 3.6937 16 6 1.1325 -3.4378 4.6509 17 6 0.7715 -4.9237 4.7042 18 6 0.3259 -5.3903 3.3169 19 6 1.9948 -5.7302 5.1448 20 6 -0.3501 -5.1333 5.6885 21 1 -0.7546 -4.2929 6.2332 22 6 -0.8600 -6.3977 5.8937 23 7 -0.3295 -7.4293 5.2739 24 14 -2.3043 -6.6459 7.0521 25 1 -3.5688 -6.6472 6.2735 26 1 -2.1558 -7.9441 7.7574 27 1 -2.3364 -5.5432 8.0464 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.7612 1.9264 -0.9360 33 1 1.5969 1.9845 0.8354 34 1 3.1254 1.4442 0.1006 35 1 3.8082 0.0964 -0.3775 36 1 4.7160 -1.4257 -0.1854 37 1 5.0400 1.1147 1.4779 38 1 6.2075 0.4565 0.3061 39 1 6.8613 -0.1484 2.6115 40 1 6.4146 -1.6030 1.6882 41 1 4.5747 -0.0855 3.5937 42 1 5.4029 -1.6176 3.9624 43 1 2.5945 -3.9906 3.2139 44 1 1.4502 -3.1058 5.6395 45 1 0.2612 -2.8629 4.3373 46 1 1.1633 -5.3181 2.6229 47 1 -0.0117 -6.4251 3.3726 48 1 -0.4915 -4.7598 2.9668 49 1 2.3123 -5.3978 6.1332 50 1 1.7378 -6.7888 5.1824 51 1 2.8058 -5.5785 4.4326 52 1 -0.6884 -8.3188 5.4180 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457990489.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:27 Heat of formation + Delta-G solvation = -77.724454 kcal Electronic energy + Delta-G solvation = -30107.032597 eV Core-core repulsion = 26299.382145 eV Total energy + Delta-G solvation = -3807.650452 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.93060 -38.47669 -37.45496 -36.12294 -34.61141 -33.05186 -32.84386 -31.50245 -30.54223 -27.29947 -26.48890 -25.61804 -25.40909 -24.79647 -23.76530 -22.87348 -20.75123 -20.21179 -18.81078 -18.44170 -17.52511 -16.46254 -16.21134 -15.64043 -15.21770 -15.02153 -14.83515 -14.66931 -14.45355 -14.17865 -13.92274 -13.67297 -13.34547 -13.07774 -12.79427 -12.69015 -12.52814 -12.38526 -12.24538 -12.04038 -11.92419 -11.64390 -11.39036 -11.26950 -11.20898 -11.13188 -11.09102 -11.02991 -10.82287 -10.75992 -10.61303 -10.27995 -10.10934 -9.52536 -9.31571 -9.20660 -8.95824 -8.69052 -8.66066 -8.31567 -8.01293 -5.93761 -4.03027 2.65558 2.74023 3.33578 3.40375 3.45224 3.67768 3.83852 4.39655 4.48025 4.49462 4.62425 4.68395 4.74498 4.85080 4.88440 5.04082 5.14586 5.19903 5.25806 5.32524 5.38703 5.42536 5.48388 5.57178 5.63191 5.64654 5.74623 5.79102 5.82007 5.87060 6.02730 6.17396 6.23907 6.38822 6.44980 6.53658 6.64442 6.93536 6.99521 7.08261 7.16856 7.29507 7.35350 7.50314 7.65983 7.78325 8.12201 8.22466 8.28771 8.38138 8.50593 8.96810 9.11051 9.62043 11.07429 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.017743 B = 0.003456 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.665924 B = 8099.658766 C = 8987.041608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.109 4.109 3 C -0.151 4.151 4 C 0.503 3.497 5 O -0.483 6.483 6 N -0.606 5.606 7 C 0.101 3.899 8 C -0.137 4.137 9 C -0.117 4.117 10 C -0.121 4.121 11 C 0.126 3.874 12 H 0.082 0.918 13 C 0.527 3.473 14 O -0.535 6.535 15 N -0.716 5.716 16 C 0.142 3.858 17 C 0.055 3.945 18 C -0.127 4.127 19 C -0.129 4.129 20 C -0.501 4.501 21 H 0.057 0.943 22 C 0.065 3.935 23 N -0.887 5.887 24 Si 0.892 3.108 25 H -0.282 1.282 26 H -0.287 1.287 27 H -0.274 1.274 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.096 0.904 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.390 0.610 44 H 0.047 0.953 45 H 0.054 0.946 46 H 0.005 0.995 47 H 0.083 0.917 48 H 0.024 0.976 49 H 0.025 0.975 50 H 0.086 0.914 51 H 0.004 0.996 52 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.308 13.595 -14.855 24.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.131 4.131 3 C -0.209 4.209 4 C 0.291 3.709 5 O -0.354 6.354 6 N -0.343 5.343 7 C -0.022 4.022 8 C -0.175 4.175 9 C -0.155 4.155 10 C -0.160 4.160 11 C 0.020 3.980 12 H 0.099 0.901 13 C 0.312 3.688 14 O -0.412 6.412 15 N -0.367 5.367 16 C 0.019 3.981 17 C 0.054 3.946 18 C -0.184 4.184 19 C -0.187 4.187 20 C -0.540 4.540 21 H 0.075 0.925 22 C -0.136 4.136 23 N -0.526 5.526 24 Si 0.720 3.280 25 H -0.208 1.208 26 H -0.213 1.213 27 H -0.199 1.199 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.225 0.775 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.024 0.976 47 H 0.102 0.898 48 H 0.043 0.957 49 H 0.044 0.956 50 H 0.104 0.896 51 H 0.023 0.977 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.460 13.908 -13.916 23.288 hybrid contribution -0.452 -0.624 0.262 0.814 sum 12.008 13.284 -13.654 22.519 Atomic orbital electron populations 1.21622 0.92301 1.03024 1.02147 1.21261 0.98474 0.97079 0.96244 1.21990 1.01546 0.94367 1.02954 1.20855 0.81706 0.79655 0.88732 1.90900 1.54272 1.50912 1.39362 1.47975 1.07006 1.55815 1.23535 1.21966 0.90460 0.99185 0.90599 1.21944 0.97765 0.99195 0.98603 1.21507 0.97679 0.99991 0.96302 1.21802 0.94526 1.01669 0.97987 1.21232 0.94555 0.95172 0.87091 0.90051 1.19595 0.82702 0.83755 0.82784 1.90631 1.59198 1.40598 1.50775 1.46097 1.38010 1.07756 1.44830 1.21562 0.87395 0.99153 0.89940 1.18357 0.94175 0.87857 0.94168 1.21769 0.97203 1.03835 0.95632 1.21828 0.95324 1.04550 0.96964 1.21028 1.16922 0.93540 1.22482 0.92512 1.24875 0.96823 0.95943 0.95935 1.69811 1.40851 0.98894 1.43060 0.86577 0.82913 0.77481 0.81035 1.20811 1.21326 1.19880 0.91550 0.92228 0.91949 0.89061 0.91519 0.91772 0.91521 0.88609 0.91326 0.91256 0.90617 0.91288 0.91590 0.90216 0.90469 0.77545 0.93415 0.92769 0.97636 0.89834 0.95675 0.95578 0.89581 0.97685 0.93151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.54 8.54 37.16 0.32 -1.23 16 2 C -0.11 -1.16 2.41 -91.77 -0.22 -1.38 16 3 C -0.15 -1.26 8.71 37.16 0.32 -0.94 16 4 C 0.50 7.52 6.88 -10.99 -0.08 7.45 16 5 O -0.48 -9.83 11.54 -19.19 -0.22 -10.05 16 6 N -0.61 -7.53 2.97 -166.53 -0.49 -8.02 16 7 C 0.10 0.78 5.53 -3.71 -0.02 0.76 16 8 C -0.14 -0.95 5.97 -26.61 -0.16 -1.11 16 9 C -0.12 -0.93 5.88 -26.69 -0.16 -1.09 16 10 C -0.12 -1.41 5.29 -26.61 -0.14 -1.55 16 11 C 0.13 1.75 3.32 -68.75 -0.23 1.52 16 12 H 0.08 0.98 7.94 -51.93 -0.41 0.57 16 13 C 0.53 10.14 4.36 -10.98 -0.05 10.09 16 14 O -0.54 -12.46 14.56 -19.19 -0.28 -12.74 16 15 N -0.72 -14.30 4.99 -60.30 -0.30 -14.60 16 16 C 0.14 3.35 4.50 -4.05 -0.02 3.33 16 17 C 0.06 1.36 0.50 -155.66 -0.08 1.29 16 18 C -0.13 -3.07 8.06 37.16 0.30 -2.77 16 19 C -0.13 -3.05 8.09 37.16 0.30 -2.75 16 20 C -0.50 -13.85 8.01 -34.45 -0.28 -14.12 16 21 H 0.06 1.60 7.75 -52.48 -0.41 1.19 16 22 C 0.06 1.78 5.13 -17.82 -0.09 1.68 16 23 N -0.89 -24.44 9.34 55.43 0.52 -23.92 16 24 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 27 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 28 H 0.07 0.90 7.99 -51.93 -0.42 0.48 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 0.76 7.64 -51.93 -0.40 0.36 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.48 5.29 -51.92 -0.27 0.20 16 35 H 0.10 0.59 4.15 -51.93 -0.22 0.38 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.08 1.10 7.84 -51.93 -0.41 0.70 16 42 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 43 H 0.39 7.11 6.05 -40.82 -0.25 6.86 16 44 H 0.05 1.18 8.14 -51.92 -0.42 0.75 16 45 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 46 H 0.00 0.10 7.00 -51.93 -0.36 -0.26 16 47 H 0.08 2.20 6.00 -51.93 -0.31 1.89 16 48 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 49 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 50 H 0.09 2.23 6.03 -51.93 -0.31 1.92 16 51 H 0.00 0.09 6.86 -51.93 -0.36 -0.27 16 52 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 388.22 15.07 5.85 5.85 Total: -1.00 -33.50 388.22 -9.39 -42.89 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -9.17 Total: 4.92 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -0.27 Total: -0.80 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -0.28 Total: -46.54 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.50 Total: -22.79 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.50 -9.39 -42.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457990489.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.834 kcal (2) G-P(sol) polarization free energy of solvation -33.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds