Wall clock time and date at job start Tue Mar 31 2020 13:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46974 * 2 1 4 4 C 1.50701 * 109.46908 * 119.99892 * 2 1 3 5 5 O 1.21283 * 120.00025 * 350.22522 * 4 2 1 6 6 N 1.34774 * 120.00131 * 170.22972 * 4 2 1 7 7 C 1.46923 * 120.62987 * 4.48565 * 6 4 2 8 8 C 1.53196 * 108.77618 * 126.39413 * 7 6 4 9 9 C 1.53040 * 109.30999 * 54.63552 * 8 7 6 10 10 C 1.53042 * 109.54066 * 298.63472 * 9 8 7 11 11 C 1.46930 * 120.63059 * 184.49047 * 6 4 2 12 12 H 1.09001 * 109.70163 * 113.74966 * 11 6 4 13 13 C 1.50696 * 109.58633 * 353.39262 * 11 6 4 14 14 O 1.21276 * 120.00403 * 293.25236 * 13 11 6 15 15 N 1.34783 * 119.99735 * 113.25525 * 13 11 6 16 16 C 1.46494 * 119.99732 * 179.97438 * 15 13 11 17 17 C 1.52998 * 109.47416 * 180.02562 * 16 15 13 18 18 C 1.53002 * 109.47139 * 300.00407 * 17 16 15 19 19 C 1.53009 * 109.46985 * 59.99628 * 17 16 15 20 20 C 1.50693 * 109.47783 * 180.02562 * 17 16 15 21 21 H 1.08005 * 119.99586 * 359.12078 * 20 17 16 22 22 C 1.37873 * 120.00335 * 179.12369 * 20 17 16 23 23 N 1.31515 * 120.00234 * 2.92857 * 22 20 17 24 24 Si 1.86806 * 120.00209 * 182.92904 * 22 20 17 25 25 H 1.48497 * 109.46990 * 94.98708 * 24 22 20 26 26 H 1.48491 * 109.47117 * 214.99260 * 24 22 20 27 27 H 1.48502 * 109.46755 * 334.99255 * 24 22 20 28 28 H 1.08997 * 109.47293 * 300.00448 * 1 2 3 29 29 H 1.09004 * 109.46729 * 60.00000 * 1 2 3 30 30 H 1.08993 * 109.47033 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47293 * 239.99552 * 2 1 3 32 32 H 1.08993 * 109.47101 * 294.37585 * 3 2 1 33 33 H 1.08995 * 109.47339 * 54.38624 * 3 2 1 34 34 H 1.09007 * 109.46931 * 174.38149 * 3 2 1 35 35 H 1.09003 * 109.58540 * 6.61040 * 7 6 4 36 36 H 1.09000 * 109.58938 * 246.18224 * 7 6 4 37 37 H 1.08999 * 109.49614 * 294.68807 * 8 7 6 38 38 H 1.08995 * 109.52541 * 174.60205 * 8 7 6 39 39 H 1.09003 * 109.45936 * 178.61747 * 9 8 7 40 40 H 1.09005 * 109.46130 * 58.65554 * 9 8 7 41 41 H 1.09002 * 109.49587 * 301.41488 * 10 9 8 42 42 H 1.08997 * 109.52364 * 181.33379 * 10 9 8 43 43 H 0.96996 * 119.99800 * 0.02562 * 15 13 11 44 44 H 1.09010 * 109.47462 * 300.00136 * 16 15 13 45 45 H 1.08999 * 109.47645 * 59.99932 * 16 15 13 46 46 H 1.09003 * 109.47162 * 64.77499 * 18 17 16 47 47 H 1.08992 * 109.47585 * 184.77789 * 18 17 16 48 48 H 1.09006 * 109.46642 * 304.78123 * 18 17 16 49 49 H 1.09002 * 109.46414 * 60.00671 * 19 17 16 50 50 H 1.08998 * 109.46938 * 180.02562 * 19 17 16 51 51 H 1.08994 * 109.47164 * 300.00712 * 19 17 16 52 52 H 0.96993 * 120.00449 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.2585 -1.0143 2.1136 6 7 3.3414 -1.0079 1.3497 7 6 4.3060 -0.5606 0.3358 8 6 5.4368 0.2019 1.0336 9 6 6.0402 -0.6793 2.1297 10 6 4.9670 -1.0097 3.1696 11 6 3.8309 -1.7859 2.4960 12 1 4.2015 -2.7519 2.1531 13 6 2.7092 -1.9954 3.4803 14 8 2.2445 -1.0496 4.0806 15 7 2.2225 -3.2341 3.6937 16 6 1.1325 -3.4378 4.6509 17 6 0.7715 -4.9237 4.7042 18 6 0.3259 -5.3903 3.3169 19 6 1.9948 -5.7302 5.1448 20 6 -0.3501 -5.1333 5.6885 21 1 -0.7546 -4.2929 6.2332 22 6 -0.8600 -6.3977 5.8937 23 7 -0.3295 -7.4293 5.2739 24 14 -2.3043 -6.6459 7.0521 25 1 -3.5688 -6.6472 6.2735 26 1 -2.1558 -7.9441 7.7574 27 1 -2.3364 -5.5432 8.0464 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.7612 1.9264 -0.9360 33 1 1.5969 1.9845 0.8354 34 1 3.1254 1.4442 0.1006 35 1 3.8082 0.0964 -0.3775 36 1 4.7160 -1.4257 -0.1854 37 1 5.0400 1.1147 1.4779 38 1 6.2075 0.4565 0.3061 39 1 6.8613 -0.1484 2.6115 40 1 6.4146 -1.6030 1.6882 41 1 4.5747 -0.0855 3.5937 42 1 5.4029 -1.6176 3.9624 43 1 2.5945 -3.9906 3.2139 44 1 1.4502 -3.1058 5.6395 45 1 0.2612 -2.8629 4.3373 46 1 1.1633 -5.3181 2.6229 47 1 -0.0117 -6.4251 3.3726 48 1 -0.4915 -4.7598 2.9668 49 1 2.3123 -5.3978 6.1332 50 1 1.7378 -6.7888 5.1824 51 1 2.8058 -5.5785 4.4326 52 1 -0.6884 -8.3188 5.4180 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457990489.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:25 Heat of formation + Delta-G solvation = -98.428548 kcal Electronic energy + Delta-G solvation = -30107.930394 eV Core-core repulsion = 26299.382145 eV Total energy + Delta-G solvation = -3808.548249 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -42.06309 -39.97493 -38.50745 -37.92501 -35.60840 -34.91738 -33.72195 -32.89462 -32.04417 -28.10166 -27.81061 -27.60573 -27.29396 -26.36221 -24.63859 -23.93741 -21.62751 -21.56387 -20.61497 -19.64508 -18.74096 -17.93426 -17.49554 -17.29383 -16.63338 -16.24148 -16.19742 -15.90868 -15.68562 -15.31403 -15.00322 -14.86653 -14.68169 -14.58369 -14.23774 -14.01007 -13.96729 -13.54665 -13.36855 -13.20816 -13.10975 -13.09665 -12.83732 -12.67315 -12.62202 -12.47736 -12.28974 -12.19390 -12.15409 -12.03282 -11.94130 -11.69225 -11.53539 -11.50006 -11.26554 -10.77883 -10.55329 -10.41722 -10.37904 -9.84390 -9.62518 -8.05008 -6.20982 1.39245 1.41357 1.51034 1.55092 1.66105 2.34192 2.34754 2.49333 3.17395 3.48902 3.74242 3.84709 3.88006 3.93206 4.04427 4.07652 4.14075 4.23504 4.41797 4.45089 4.49303 4.51516 4.63721 4.67872 4.71278 4.81181 4.85915 4.87148 4.89823 4.97769 4.99199 5.01450 5.08872 5.10050 5.14214 5.15925 5.20659 5.28654 5.31778 5.36540 5.47715 5.52268 5.62576 5.62970 5.67938 6.10779 6.18852 6.38018 6.41774 6.78663 6.81819 7.21403 7.46129 7.59161 8.94077 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.017743 B = 0.003456 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.665924 B = 8099.658766 C = 8987.041608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.102 4.102 3 C -0.145 4.145 4 C 0.488 3.512 5 O -0.551 6.551 6 N -0.602 5.602 7 C 0.092 3.908 8 C -0.134 4.134 9 C -0.111 4.111 10 C -0.118 4.118 11 C 0.129 3.871 12 H 0.110 0.890 13 C 0.522 3.478 14 O -0.582 6.582 15 N -0.713 5.713 16 C 0.164 3.836 17 C 0.052 3.948 18 C -0.112 4.112 19 C -0.116 4.116 20 C -0.531 4.531 21 H 0.037 0.963 22 C 0.030 3.970 23 N -0.897 5.897 24 Si 0.946 3.054 25 H -0.279 1.279 26 H -0.277 1.277 27 H -0.278 1.278 28 H 0.033 0.967 29 H 0.093 0.907 30 H 0.039 0.961 31 H 0.128 0.872 32 H 0.097 0.903 33 H 0.037 0.963 34 H 0.082 0.918 35 H 0.117 0.883 36 H 0.095 0.905 37 H 0.055 0.945 38 H 0.111 0.889 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.048 0.952 42 H 0.077 0.923 43 H 0.401 0.599 44 H 0.027 0.973 45 H 0.017 0.983 46 H 0.032 0.968 47 H 0.065 0.935 48 H 0.008 0.992 49 H 0.017 0.983 50 H 0.066 0.934 51 H 0.036 0.964 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.061 13.787 -17.892 27.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.123 4.123 3 C -0.202 4.202 4 C 0.277 3.723 5 O -0.428 6.428 6 N -0.338 5.338 7 C -0.029 4.029 8 C -0.172 4.172 9 C -0.148 4.148 10 C -0.157 4.157 11 C 0.023 3.977 12 H 0.127 0.873 13 C 0.310 3.690 14 O -0.462 6.462 15 N -0.365 5.365 16 C 0.040 3.960 17 C 0.051 3.949 18 C -0.170 4.170 19 C -0.174 4.174 20 C -0.570 4.570 21 H 0.055 0.945 22 C -0.170 4.170 23 N -0.536 5.536 24 Si 0.773 3.227 25 H -0.205 1.205 26 H -0.202 1.202 27 H -0.203 1.203 28 H 0.052 0.948 29 H 0.112 0.888 30 H 0.058 0.942 31 H 0.145 0.855 32 H 0.116 0.884 33 H 0.056 0.944 34 H 0.101 0.899 35 H 0.134 0.866 36 H 0.113 0.887 37 H 0.073 0.927 38 H 0.130 0.870 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.067 0.933 42 H 0.096 0.904 43 H 0.237 0.763 44 H 0.046 0.954 45 H 0.036 0.964 46 H 0.051 0.949 47 H 0.083 0.917 48 H 0.027 0.973 49 H 0.036 0.964 50 H 0.085 0.915 51 H 0.055 0.945 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.286 14.096 -17.008 26.863 hybrid contribution -1.298 -0.640 1.199 1.880 sum 13.987 13.456 -15.809 25.033 Atomic orbital electron populations 1.21608 0.93626 1.01540 1.02166 1.21339 0.97365 0.98387 0.95217 1.21986 1.02283 0.92440 1.03518 1.21787 0.82071 0.79117 0.89314 1.90876 1.56142 1.53843 1.41960 1.48190 1.07177 1.54791 1.23626 1.22409 0.89861 1.00810 0.89770 1.21971 0.98204 0.98128 0.98893 1.21521 0.96432 1.01377 0.95510 1.21813 0.94809 0.99818 0.99249 1.21234 0.92533 0.97336 0.86635 0.87256 1.20572 0.83203 0.82413 0.82775 1.90597 1.61072 1.41890 1.52676 1.45943 1.37232 1.08912 1.44411 1.21010 0.87360 0.97884 0.89763 1.18356 0.94130 0.88442 0.93950 1.21581 0.97609 1.01982 0.95846 1.21640 0.95592 1.02725 0.97423 1.21252 1.18582 0.93456 1.23708 0.94453 1.25445 0.98767 0.95605 0.97179 1.69894 1.41333 0.99041 1.43321 0.85729 0.80236 0.77463 0.79296 1.20464 1.20182 1.20329 0.94757 0.88837 0.94214 0.85453 0.88381 0.94406 0.89901 0.86564 0.88691 0.92664 0.87026 0.89978 0.89569 0.93339 0.90394 0.76288 0.95414 0.96434 0.94870 0.91654 0.97310 0.96374 0.91476 0.94495 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.54 71.98 0.61 -2.45 16 2 C -0.10 -1.99 2.41 -11.54 -0.03 -2.01 16 3 C -0.15 -2.06 8.71 71.98 0.63 -1.43 16 4 C 0.49 14.53 6.88 87.66 0.60 15.14 16 5 O -0.55 -23.81 11.54 20.63 0.24 -23.57 16 6 N -0.60 -13.85 2.97 -799.17 -2.38 -16.22 16 7 C 0.09 1.02 5.53 86.36 0.48 1.49 16 8 C -0.13 -1.27 5.97 30.67 0.18 -1.09 16 9 C -0.11 -1.34 5.88 30.62 0.18 -1.16 16 10 C -0.12 -2.60 5.29 30.67 0.16 -2.44 16 11 C 0.13 3.44 3.32 44.23 0.15 3.58 16 12 H 0.11 2.30 7.94 -2.39 -0.02 2.28 16 13 C 0.52 20.79 4.36 87.65 0.38 21.17 16 14 O -0.58 -28.98 14.56 20.65 0.30 -28.68 16 15 N -0.71 -29.24 4.99 -463.07 -2.31 -31.55 16 16 C 0.16 8.21 4.50 86.38 0.39 8.60 16 17 C 0.05 2.65 0.50 -52.93 -0.03 2.62 16 18 C -0.11 -5.54 8.06 71.98 0.58 -4.96 16 19 C -0.12 -5.51 8.09 71.99 0.58 -4.93 16 20 C -0.53 -30.53 8.01 25.60 0.21 -30.33 16 21 H 0.04 2.23 7.75 -2.91 -0.02 2.20 16 22 C 0.03 1.66 5.13 84.65 0.43 2.09 16 23 N -0.90 -49.72 9.34 21.45 0.20 -49.52 16 24 Si 0.95 44.81 29.54 68.60 2.03 46.83 16 25 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 26 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 27 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 28 H 0.03 0.99 7.99 -2.39 -0.02 0.97 16 29 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.13 1.58 7.64 -2.39 -0.02 1.57 16 32 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.08 0.90 5.29 -2.38 -0.01 0.89 16 35 H 0.12 0.83 4.15 -2.39 -0.01 0.82 16 36 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.05 0.71 8.08 -2.39 -0.02 0.69 16 38 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.05 1.37 7.84 -2.39 -0.02 1.35 16 42 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.40 14.35 6.05 -92.71 -0.56 13.79 16 44 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 45 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.03 1.40 7.00 -2.39 -0.02 1.38 16 47 H 0.06 3.47 6.00 -2.39 -0.01 3.46 16 48 H 0.01 0.40 8.14 -2.38 -0.02 0.38 16 49 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.07 3.47 6.03 -2.39 -0.01 3.46 16 51 H 0.04 1.47 6.86 -2.39 -0.02 1.45 16 52 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 Total: -1.00 -80.27 388.22 3.93 -76.34 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 0.34 Total: 22.48 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: 5.51 Total: 3.89 kcal Atomic # 7 Polarization: -92.81 SS G_CDS: -4.48 Total: -97.30 kcal Atomic # 8 Polarization: -52.79 SS G_CDS: 0.54 Total: -52.25 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -80.27 3.93 -76.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457990489.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.087 kcal (2) G-P(sol) polarization free energy of solvation -80.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds