Wall clock time and date at job start Tue Mar 31 2020 14:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47063 * 2 1 4 4 H 1.09000 * 109.47903 * 305.01978 * 3 2 1 5 5 C 1.53092 * 109.48204 * 184.99872 * 3 2 1 6 6 C 1.53175 * 109.16616 * 182.39509 * 5 3 2 7 7 H 1.09004 * 109.54200 * 297.02349 * 6 5 3 8 8 N 1.46496 * 109.54532 * 176.84817 * 6 5 3 9 9 C 1.34778 * 120.00177 * 155.00321 * 8 6 5 10 10 O 1.21588 * 119.99997 * 5.06491 * 9 8 6 11 11 N 1.34776 * 119.99972 * 185.06906 * 9 8 6 12 12 C 1.46923 * 120.62871 * 354.95935 * 11 9 8 13 13 C 1.53196 * 108.77334 * 126.37523 * 12 11 9 14 14 C 1.53042 * 109.31677 * 54.62904 * 13 12 11 15 15 C 1.52997 * 109.46080 * 178.63008 * 14 13 12 16 16 C 1.50700 * 109.46812 * 185.03197 * 15 14 13 17 17 H 1.07994 * 120.00157 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99593 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00221 * 359.97438 * 18 16 15 20 20 Si 1.86809 * 119.99824 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47107 * 89.99758 * 20 18 16 22 22 H 1.48499 * 109.47013 * 209.99721 * 20 18 16 23 23 H 1.48500 * 109.46865 * 329.99783 * 20 18 16 24 24 C 1.53035 * 109.52582 * 298.64536 * 14 13 12 25 25 C 1.46926 * 120.62730 * 174.93854 * 11 9 8 26 26 C 1.53179 * 109.03505 * 56.97669 * 6 5 3 27 27 C 1.53096 * 109.16517 * 303.02341 * 26 6 5 28 28 O 1.42897 * 109.49127 * 65.04824 * 3 2 1 29 29 H 1.08996 * 109.47019 * 300.00157 * 1 2 3 30 30 H 1.09004 * 109.46709 * 60.00586 * 1 2 3 31 31 H 1.08998 * 109.46941 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47332 * 239.99888 * 2 1 3 33 33 H 1.09003 * 109.47181 * 119.99659 * 2 1 3 34 34 H 1.09007 * 109.52181 * 62.48615 * 5 3 2 35 35 H 1.09001 * 109.57343 * 302.33386 * 5 3 2 36 36 H 0.96998 * 119.99957 * 334.99966 * 8 6 5 37 37 H 1.08998 * 109.58938 * 6.58625 * 12 11 9 38 38 H 1.08998 * 109.70203 * 246.22703 * 12 11 9 39 39 H 1.09001 * 109.49203 * 294.67914 * 13 12 11 40 40 H 1.09000 * 109.49747 * 174.58517 * 13 12 11 41 41 H 1.09003 * 109.45406 * 58.65883 * 14 13 12 42 42 H 1.09005 * 109.47054 * 305.02639 * 15 14 13 43 43 H 1.08997 * 109.47182 * 65.02641 * 15 14 13 44 44 H 0.97007 * 119.99900 * 179.97438 * 19 18 16 45 45 H 1.09009 * 109.49554 * 181.30557 * 24 14 13 46 46 H 1.08998 * 109.50088 * 301.40416 * 24 14 13 47 47 H 1.08997 * 109.58967 * 353.41743 * 25 11 9 48 48 H 1.09007 * 109.58361 * 113.69914 * 25 11 9 49 49 H 1.09009 * 109.52012 * 62.92836 * 26 6 5 50 50 H 1.09001 * 109.52250 * 183.11115 * 26 6 5 51 51 H 1.09001 * 109.47665 * 297.62429 * 27 26 6 52 52 H 1.08995 * 109.48643 * 177.59437 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9818 -0.8416 5 6 3.5657 1.4446 -0.1258 6 6 4.0733 2.8886 -0.0648 7 1 3.6804 3.4493 -0.9130 8 7 5.5376 2.8956 -0.1088 9 6 6.1929 3.9812 -0.5654 10 8 5.5748 4.9877 -0.8540 11 7 7.5334 3.9511 -0.7022 12 6 8.3054 2.7838 -0.2551 13 6 9.1725 2.2913 -1.4182 14 6 10.0278 3.4492 -1.9376 15 6 10.9201 2.9527 -3.0770 16 6 11.8493 4.0589 -3.5058 17 1 11.8073 5.0200 -3.0151 18 6 12.7523 3.8442 -4.5254 19 7 12.8031 2.6739 -5.1232 20 14 13.9037 5.2156 -5.0575 21 1 15.1581 5.1438 -4.2659 22 1 14.2197 5.0646 -6.5006 23 1 13.2486 6.5285 -4.8289 24 6 9.1177 4.5665 -2.4526 25 6 8.2503 5.0850 -1.3016 26 6 3.5968 3.5310 1.2415 27 6 2.0698 3.4482 1.3145 28 8 1.6632 2.0815 1.2213 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8534 0.9972 -1.0772 35 1 4.0004 0.8709 0.6928 36 1 6.0356 2.1189 0.1907 37 1 7.6238 1.9912 0.0536 38 1 8.9434 3.0641 0.5830 39 1 8.5315 1.9243 -2.2198 40 1 9.8211 1.4862 -1.0729 41 1 10.6506 3.8318 -1.1290 42 1 11.5051 2.0990 -2.7347 43 1 10.2987 2.6525 -3.9207 44 1 13.4382 2.5230 -5.8408 45 1 9.7273 5.3811 -2.8438 46 1 8.4772 4.1782 -3.2445 47 1 7.5322 5.8107 -1.6833 48 1 8.8820 5.5569 -0.5490 49 1 4.0312 2.9996 2.0884 50 1 3.9067 4.5756 1.2680 51 1 1.6354 4.0137 0.4901 52 1 1.7279 3.8655 2.2616 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000569806346.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:56 Heat of formation + Delta-G solvation = -121.056715 kcal Electronic energy + Delta-G solvation = -28377.139998 eV Core-core repulsion = 24567.610518 eV Total energy + Delta-G solvation = -3809.529480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.66297 -40.42380 -38.82250 -36.36433 -35.72139 -34.89658 -34.06284 -32.66596 -31.64732 -30.75941 -29.69277 -26.56064 -25.75298 -24.66701 -24.06004 -23.57915 -22.24059 -21.58149 -21.33573 -20.41320 -19.09296 -18.38831 -17.57203 -17.40878 -16.85613 -16.59205 -16.48116 -15.82453 -15.57930 -15.41897 -15.08335 -14.93546 -14.86087 -14.61952 -14.53200 -14.43819 -14.19482 -13.91798 -13.80058 -13.42406 -13.02430 -12.76100 -12.74201 -12.71583 -12.50499 -12.38170 -12.30190 -12.16397 -12.11630 -11.85144 -11.79477 -11.74193 -11.42639 -11.31538 -11.19034 -11.03781 -10.81586 -10.54927 -10.51495 -10.21149 -9.45770 -8.16980 -6.25665 1.40356 1.41073 1.51650 1.60661 2.11170 2.42127 2.79040 2.88643 3.16698 3.58556 3.78409 3.87039 3.91821 3.99621 4.07489 4.08617 4.17539 4.20046 4.23671 4.37655 4.42147 4.43212 4.50475 4.54262 4.67626 4.69798 4.73413 4.80483 4.85064 4.89735 4.91389 4.98235 5.03779 5.08288 5.08822 5.15731 5.17479 5.29391 5.31353 5.33424 5.38878 5.47726 5.51000 5.55458 5.61242 5.81760 5.90545 5.98199 6.28218 6.30367 6.91021 6.94890 7.42742 7.52818 8.94627 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.025708 B = 0.002203 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.877389 B =12709.734114 C =13281.092970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C 0.092 3.908 4 H 0.058 0.942 5 C -0.149 4.149 6 C 0.162 3.838 7 H 0.064 0.936 8 N -0.730 5.730 9 C 0.704 3.296 10 O -0.634 6.634 11 N -0.625 5.625 12 C 0.119 3.881 13 C -0.123 4.123 14 C -0.073 4.073 15 C 0.033 3.967 16 C -0.528 4.528 17 H 0.062 0.938 18 C -0.003 4.003 19 N -0.935 5.935 20 Si 0.957 3.043 21 H -0.273 1.273 22 H -0.287 1.287 23 H -0.264 1.264 24 C -0.109 4.109 25 C 0.137 3.863 26 C -0.159 4.159 27 C 0.067 3.933 28 O -0.387 6.387 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.089 0.911 36 H 0.408 0.592 37 H 0.101 0.899 38 H 0.085 0.915 39 H 0.050 0.950 40 H 0.081 0.919 41 H 0.063 0.937 42 H -0.008 1.008 43 H -0.017 1.017 44 H 0.261 0.739 45 H 0.067 0.933 46 H 0.039 0.961 47 H 0.075 0.925 48 H 0.077 0.923 49 H 0.078 0.922 50 H 0.061 0.939 51 H 0.051 0.949 52 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.982 -5.019 15.250 27.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C 0.034 3.966 4 H 0.076 0.924 5 C -0.187 4.187 6 C 0.057 3.943 7 H 0.082 0.918 8 N -0.388 5.388 9 C 0.405 3.595 10 O -0.516 6.516 11 N -0.361 5.361 12 C -0.004 4.004 13 C -0.162 4.162 14 C -0.092 4.092 15 C -0.004 4.004 16 C -0.566 4.566 17 H 0.081 0.919 18 C -0.200 4.200 19 N -0.576 5.576 20 Si 0.783 3.217 21 H -0.199 1.199 22 H -0.213 1.213 23 H -0.188 1.188 24 C -0.148 4.148 25 C 0.014 3.986 26 C -0.198 4.198 27 C -0.010 4.010 28 O -0.306 6.306 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.247 0.753 37 H 0.119 0.881 38 H 0.104 0.896 39 H 0.069 0.931 40 H 0.100 0.900 41 H 0.082 0.918 42 H 0.011 0.989 43 H 0.002 0.998 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.058 0.942 47 H 0.093 0.907 48 H 0.095 0.905 49 H 0.097 0.903 50 H 0.080 0.920 51 H 0.069 0.931 52 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -22.436 -4.498 15.045 27.385 hybrid contribution 1.462 0.489 -1.013 1.845 sum -20.974 -4.009 14.032 25.552 Atomic orbital electron populations 1.21708 0.95134 1.02049 1.01802 1.21563 0.96808 0.93153 1.03564 1.22199 0.92367 0.95139 0.86940 0.92383 1.22487 0.96917 0.94731 1.04564 1.20836 0.78417 0.97308 0.97784 0.91790 1.45249 1.07039 1.17022 1.69480 1.16017 0.81674 0.83677 0.78119 1.90854 1.67426 1.33475 1.59864 1.47375 1.04280 1.20189 1.64257 1.21790 0.94856 0.87068 0.96637 1.21932 0.98185 0.98173 0.97865 1.21031 0.95415 0.95070 0.97651 1.19012 0.93390 0.95063 0.92896 1.21682 1.18206 0.99324 1.17375 0.91933 1.25932 0.99383 0.97885 0.96819 1.70096 1.37851 1.24385 1.25254 0.85557 0.79217 0.79748 0.77200 1.19855 1.21261 1.18817 1.21756 0.97054 0.99196 0.96787 1.21430 0.94486 0.87632 0.95049 1.22546 0.97522 1.01584 0.98155 1.22569 0.92506 0.82823 1.03136 1.87918 1.78698 1.24996 1.38988 0.92981 0.92861 0.91782 0.89224 0.90886 0.89384 0.89242 0.75311 0.88109 0.89645 0.93107 0.90023 0.91838 0.98928 0.99819 0.93043 0.91448 0.94249 0.90695 0.90521 0.90317 0.92014 0.93092 0.87198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.81 71.98 0.71 -0.98 16 2 C -0.11 -1.26 5.64 30.60 0.17 -1.09 16 3 C 0.09 1.29 2.64 30.63 0.08 1.37 16 4 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 5 C -0.15 -2.03 4.89 30.68 0.15 -1.88 16 6 C 0.16 3.10 2.51 45.11 0.11 3.21 16 7 H 0.06 1.55 7.65 -2.38 -0.02 1.53 16 8 N -0.73 -15.22 5.00 -457.24 -2.28 -17.51 16 9 C 0.70 20.54 8.26 179.05 1.48 22.01 16 10 O -0.63 -23.50 15.49 -3.99 -0.06 -23.56 16 11 N -0.62 -17.33 2.97 -836.95 -2.49 -19.82 16 12 C 0.12 2.60 6.43 86.36 0.56 3.16 16 13 C -0.12 -3.59 5.36 30.67 0.16 -3.43 16 14 C -0.07 -2.76 2.10 -10.77 -0.02 -2.78 16 15 C 0.03 1.69 4.45 29.85 0.13 1.82 16 16 C -0.53 -29.02 8.39 25.60 0.21 -28.81 16 17 H 0.06 3.29 7.06 -2.91 -0.02 3.27 16 18 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 19 N -0.93 -56.55 13.29 21.45 0.28 -56.27 16 20 Si 0.96 44.07 29.54 68.60 2.03 46.10 16 21 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 22 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 23 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 24 C -0.11 -4.02 5.19 30.66 0.16 -3.86 16 25 C 0.14 4.25 6.42 86.35 0.55 4.81 16 26 C -0.16 -2.85 5.72 30.69 0.18 -2.67 16 27 C 0.07 1.04 6.84 72.01 0.49 1.53 16 28 O -0.39 -6.49 9.94 -148.98 -1.48 -7.97 16 29 H 0.05 0.70 7.82 -2.39 -0.02 0.68 16 30 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.09 1.11 8.14 -2.38 -0.02 1.09 16 35 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.41 6.27 6.06 -92.71 -0.56 5.71 16 37 H 0.10 1.53 5.57 -2.39 -0.01 1.52 16 38 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 41 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 42 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 43 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 44 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 45 H 0.07 2.67 6.91 -2.38 -0.02 2.65 16 46 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.07 2.50 7.03 -2.39 -0.02 2.49 16 48 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 49 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 50 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 51 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 52 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -70.54 398.78 1.90 -68.64 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.31 Total: 17.67 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: 5.59 Total: -7.28 kcal Atomic # 7 Polarization: -89.11 SS G_CDS: -4.49 Total: -93.60 kcal Atomic # 8 Polarization: -29.99 SS G_CDS: -1.54 Total: -31.53 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -70.54 1.90 -68.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000569806346.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.416 kcal (2) G-P(sol) polarization free energy of solvation -70.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds