Wall clock time and date at job start Tue Mar 31 2020 15:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46950 * 2 1 4 4 H 1.08994 * 109.47104 * 304.99529 * 3 2 1 5 5 N 1.46491 * 109.47070 * 65.00186 * 3 2 1 6 6 C 1.34777 * 120.00029 * 275.27068 * 5 3 2 7 7 O 1.21590 * 119.99768 * 354.53690 * 6 5 3 8 8 N 1.34777 * 120.00307 * 174.53184 * 6 5 3 9 9 C 1.46926 * 120.63223 * 184.90149 * 8 6 5 10 10 C 1.52763 * 109.00864 * 233.58806 * 9 8 6 11 11 C 1.53045 * 109.38341 * 305.58758 * 10 9 8 12 12 C 1.52992 * 109.44775 * 181.25450 * 11 10 9 13 13 C 1.50702 * 109.47578 * 64.94122 * 12 11 10 14 14 H 1.07999 * 119.99535 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00405 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00039 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00106 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47175 * 89.99981 * 17 15 13 19 19 H 1.48496 * 109.47307 * 210.00213 * 17 15 13 20 20 H 1.48500 * 109.47143 * 330.00269 * 17 15 13 21 21 C 1.53046 * 109.53571 * 61.24017 * 11 10 9 22 22 C 1.46923 * 120.62800 * 5.18663 * 8 6 5 23 23 C 1.53001 * 109.46825 * 185.00141 * 3 2 1 24 24 H 1.09007 * 110.33023 * 300.69878 * 23 3 2 25 25 C 1.54476 * 110.37178 * 178.44856 * 23 3 2 26 26 C 1.54511 * 104.06434 * 217.18747 * 25 23 3 27 27 C 1.54471 * 104.06034 * 0.02562 * 26 25 23 28 28 O 1.44424 * 110.37644 * 62.94963 * 23 3 2 29 29 H 1.08988 * 109.47134 * 60.00116 * 1 2 3 30 30 H 1.08998 * 109.47127 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46974 * 299.99720 * 1 2 3 32 32 H 1.09004 * 109.47167 * 239.99594 * 2 1 3 33 33 H 1.09005 * 109.47250 * 120.00047 * 2 1 3 34 34 H 0.97005 * 120.00509 * 94.99962 * 5 3 2 35 35 H 1.08998 * 109.58603 * 353.41878 * 9 8 6 36 36 H 1.08999 * 109.58326 * 113.84581 * 9 8 6 37 37 H 1.09001 * 109.56664 * 185.55384 * 10 9 8 38 38 H 1.09002 * 109.36356 * 65.49698 * 10 9 8 39 39 H 1.09001 * 109.45955 * 301.22355 * 11 10 9 40 40 H 1.09001 * 109.47294 * 184.93905 * 12 11 10 41 41 H 1.09002 * 109.47454 * 304.93610 * 12 11 10 42 42 H 0.97002 * 120.00417 * 180.02562 * 16 15 13 43 43 H 1.09004 * 109.49278 * 178.68564 * 21 11 10 44 44 H 1.08997 * 109.52324 * 58.60230 * 21 11 10 45 45 H 1.09005 * 109.58496 * 246.15311 * 22 8 6 46 46 H 1.09000 * 109.59120 * 6.43213 * 22 8 6 47 47 H 1.09000 * 110.51479 * 335.83511 * 25 23 3 48 48 H 1.08998 * 110.51300 * 98.40753 * 25 23 3 49 49 H 1.09003 * 110.50829 * 118.64772 * 26 25 23 50 50 H 1.08999 * 110.51219 * 241.21917 * 26 25 23 51 51 H 1.09000 * 110.37291 * 142.80992 * 27 26 25 52 52 H 1.09002 * 110.37524 * 265.02943 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6525 2.0975 1.2517 6 6 0.4331 2.6596 1.3688 7 8 -0.3075 2.7112 0.4058 8 7 0.0346 3.1643 2.5533 9 6 -1.3293 3.6829 2.7252 10 6 -1.2547 5.1078 3.2710 11 6 -0.4120 5.1189 4.5485 12 6 -0.3622 6.5397 5.1135 13 6 -1.7448 6.9585 5.5426 14 1 -2.5760 6.2792 5.4237 15 6 -1.9487 8.2087 6.0870 16 7 -0.9367 9.0361 6.2313 17 14 -3.6626 8.7280 6.6181 18 1 -3.8774 8.3479 8.0375 19 1 -3.8013 10.1994 6.4732 20 1 -4.6718 8.0494 5.7659 21 6 1.0085 4.6473 4.2286 22 6 0.9577 3.2121 3.6952 23 6 3.5648 1.4444 -0.1258 24 1 4.0139 0.8976 0.7035 25 6 4.0993 2.8931 -0.1670 26 6 5.2707 2.8327 -1.1727 27 6 5.3049 1.3548 -1.6206 28 8 3.9661 0.8645 -1.3862 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.2719 2.1232 1.9978 35 1 -1.8423 3.6880 1.7634 36 1 -1.8737 3.0531 3.4288 37 1 -2.2595 5.4660 3.4950 38 1 -0.7943 5.7566 2.5258 39 1 -0.8593 4.4508 5.2844 40 1 0.3082 6.5659 5.9726 41 1 0.0029 7.2232 4.3469 42 1 -1.0800 9.9156 6.6146 43 1 1.6144 4.6777 5.1342 44 1 1.4480 5.3003 3.4747 45 1 0.6036 2.5430 4.4796 46 1 1.9527 2.9041 3.3740 47 1 3.3266 3.5754 -0.5212 48 1 4.4540 3.1975 0.8177 49 1 5.0770 3.4852 -2.0241 50 1 6.2063 3.1087 -0.6863 51 1 5.5557 1.2848 -2.6790 52 1 6.0237 0.7938 -1.0233 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581940672.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:08 Heat of formation + Delta-G solvation = -93.802076 kcal Electronic energy + Delta-G solvation = -28967.134918 eV Core-core repulsion = 25158.787288 eV Total energy + Delta-G solvation = -3808.347630 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.66344 -39.62863 -37.67633 -35.71447 -34.08525 -32.67929 -32.31748 -31.69506 -30.65508 -29.88042 -27.93236 -25.83640 -24.57284 -22.86398 -22.78005 -22.02369 -21.28103 -21.04799 -20.06707 -19.21772 -17.90206 -17.04973 -16.38574 -16.24822 -16.00347 -15.58635 -15.33238 -14.57571 -14.50265 -14.21129 -14.08752 -13.87542 -13.57336 -13.47319 -13.17480 -12.92560 -12.76648 -12.72173 -12.22659 -12.12967 -12.02272 -11.88659 -11.65632 -11.46072 -11.19310 -11.05776 -11.02687 -10.85950 -10.83120 -10.74107 -10.68786 -10.40761 -10.17596 -10.11886 -9.88567 -9.62838 -9.25949 -9.07400 -8.97700 -8.35837 -8.23535 -6.00576 -4.02258 2.60826 3.31236 3.32276 3.38118 3.41059 3.55623 4.00284 4.16081 4.32278 4.45314 4.57503 4.64607 4.83322 4.93146 5.00659 5.09195 5.14440 5.26804 5.32021 5.34366 5.34874 5.37462 5.43171 5.53111 5.60392 5.64152 5.64880 5.73552 5.75325 5.82708 5.88650 5.95866 5.98792 6.10263 6.11775 6.32797 6.37822 6.39410 6.43637 6.50816 6.57713 6.64918 6.97442 7.02062 7.09702 7.14862 7.65321 7.80090 7.99056 8.03215 8.41900 8.72006 9.04200 9.61729 11.10753 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.020779 B = 0.002581 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.188605 B =10846.352715 C =11691.361627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.130 4.130 3 C 0.170 3.830 4 H 0.097 0.903 5 N -0.743 5.743 6 C 0.711 3.289 7 O -0.588 6.588 8 N -0.622 5.622 9 C 0.127 3.873 10 C -0.119 4.119 11 C -0.079 4.079 12 C 0.028 3.972 13 C -0.515 4.515 14 H 0.056 0.944 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.889 3.111 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.130 4.130 22 C 0.114 3.886 23 C 0.070 3.930 24 H 0.072 0.928 25 C -0.150 4.150 26 C -0.156 4.156 27 C 0.045 3.955 28 O -0.364 6.364 29 H 0.059 0.941 30 H 0.043 0.957 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.393 0.607 35 H 0.086 0.914 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.015 0.985 41 H 0.015 0.985 42 H 0.260 0.740 43 H 0.069 0.931 44 H 0.061 0.939 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.076 0.924 50 H 0.077 0.923 51 H 0.092 0.908 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.909 -17.598 -11.730 24.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.064 3.936 4 H 0.115 0.885 5 N -0.402 5.402 6 C 0.413 3.587 7 O -0.467 6.467 8 N -0.359 5.359 9 C 0.005 3.995 10 C -0.157 4.157 11 C -0.098 4.098 12 C -0.009 4.009 13 C -0.554 4.554 14 H 0.074 0.926 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.717 3.283 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.199 1.199 21 C -0.168 4.168 22 C -0.010 4.010 23 C 0.011 3.989 24 H 0.090 0.910 25 C -0.188 4.188 26 C -0.194 4.194 27 C -0.032 4.032 28 O -0.282 6.282 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.229 0.771 35 H 0.105 0.895 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.033 0.967 41 H 0.033 0.967 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.083 0.917 47 H 0.099 0.901 48 H 0.096 0.904 49 H 0.095 0.905 50 H 0.095 0.905 51 H 0.110 0.890 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.265 -17.540 -12.529 24.800 hybrid contribution -0.288 0.663 1.009 1.241 sum 11.978 -16.877 -11.520 23.686 Atomic orbital electron populations 1.21745 0.94755 1.00307 1.03149 1.21922 0.97119 0.95681 1.02166 1.20678 0.91481 0.93855 0.87548 0.88515 1.45154 1.16342 1.62059 1.16631 1.15689 0.81664 0.78025 0.83303 1.90904 1.54558 1.64160 1.37051 1.47355 1.14469 1.64299 1.09788 1.21564 0.80822 0.95406 1.01733 1.21836 1.02328 0.94062 0.97481 1.21172 0.92120 1.00567 0.95937 1.19118 0.97012 0.89134 0.95626 1.21240 0.94281 0.99534 1.40301 0.92567 1.25017 0.96652 0.96798 0.96019 1.69960 1.30386 1.07964 1.45288 0.86642 0.84965 0.77723 0.78965 1.20756 1.21317 1.19850 1.22028 0.99775 0.94246 1.00745 1.21670 0.91968 0.98809 0.88507 1.23148 0.94791 0.93164 0.87769 0.91036 1.22975 0.98356 0.97166 1.00257 1.22941 0.99119 0.97486 0.99805 1.23425 0.84824 0.93134 1.01789 1.89139 1.30439 1.70474 1.38126 0.92164 0.93811 0.92476 0.90615 0.92295 0.77072 0.89538 0.92195 0.89784 0.92422 0.92370 0.96707 0.96687 0.93071 0.91204 0.92060 0.91575 0.91692 0.90093 0.90351 0.90539 0.90453 0.88959 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.73 8.58 37.16 0.32 -1.41 16 2 C -0.13 -1.35 5.56 -26.73 -0.15 -1.50 16 3 C 0.17 1.81 1.93 -67.93 -0.13 1.68 16 4 H 0.10 1.28 7.51 -51.93 -0.39 0.89 16 5 N -0.74 -8.16 4.61 -58.68 -0.27 -8.43 16 6 C 0.71 10.39 6.66 -86.92 -0.58 9.81 16 7 O -0.59 -10.51 13.31 5.29 0.07 -10.44 16 8 N -0.62 -8.89 2.98 -178.76 -0.53 -9.42 16 9 C 0.13 1.99 6.41 -3.93 -0.03 1.96 16 10 C -0.12 -2.15 5.17 -26.83 -0.14 -2.29 16 11 C -0.08 -1.50 2.10 -90.58 -0.19 -1.69 16 12 C 0.03 0.69 4.45 -27.89 -0.12 0.56 16 13 C -0.52 -13.97 8.39 -34.44 -0.29 -14.26 16 14 H 0.06 1.48 7.05 -52.49 -0.37 1.11 16 15 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 17 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 C -0.13 -1.97 5.36 -26.61 -0.14 -2.11 16 22 C 0.11 1.38 6.39 -3.71 -0.02 1.36 16 23 C 0.07 0.60 2.86 -25.96 -0.07 0.53 16 24 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 25 C -0.15 -1.22 6.32 -25.16 -0.16 -1.37 16 26 C -0.16 -1.05 7.09 -25.17 -0.18 -1.23 16 27 C 0.05 0.31 7.63 37.93 0.29 0.60 16 28 O -0.36 -3.54 10.77 -35.23 -0.38 -3.92 16 29 H 0.06 0.81 7.92 -51.94 -0.41 0.40 16 30 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.80 5.74 -51.93 -0.30 0.50 16 32 H 0.08 0.77 7.67 -51.93 -0.40 0.37 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.39 3.46 6.09 -40.82 -0.25 3.21 16 35 H 0.09 1.43 6.99 -51.93 -0.36 1.06 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.08 1.64 6.91 -51.93 -0.36 1.28 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 43 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 45 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 46 H 0.06 0.60 5.64 -51.93 -0.29 0.31 16 47 H 0.08 0.80 7.87 -51.93 -0.41 0.39 16 48 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 51 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 52 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 394.16 15.07 5.94 5.94 Total: -1.00 -31.57 394.16 -10.59 -42.16 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -9.44 Total: 1.43 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -1.69 Total: -7.86 kcal Atomic # 7 Polarization: -43.61 SS G_CDS: -0.07 Total: -43.68 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.31 Total: -14.36 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.57 -10.59 -42.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581940672.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.642 kcal (2) G-P(sol) polarization free energy of solvation -31.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds