Wall clock time and date at job start Tue Mar 31 2020 15:26:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53005 * 109.46950 * 2 1 4 4 H 1.08994 * 109.47104 * 304.99529 * 3 2 1 5 5 N 1.46491 * 109.47070 * 65.00186 * 3 2 1 6 6 C 1.34777 * 120.00029 * 275.27068 * 5 3 2 7 7 O 1.21590 * 119.99768 * 354.53690 * 6 5 3 8 8 N 1.34777 * 120.00307 * 174.53184 * 6 5 3 9 9 C 1.46926 * 120.63223 * 184.90149 * 8 6 5 10 10 C 1.52763 * 109.00864 * 233.58806 * 9 8 6 11 11 C 1.53045 * 109.38341 * 305.58758 * 10 9 8 12 12 C 1.52992 * 109.44775 * 181.25450 * 11 10 9 13 13 C 1.50702 * 109.47578 * 64.94122 * 12 11 10 14 14 H 1.07999 * 119.99535 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00405 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00039 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00106 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47175 * 89.99981 * 17 15 13 19 19 H 1.48496 * 109.47307 * 210.00213 * 17 15 13 20 20 H 1.48500 * 109.47143 * 330.00269 * 17 15 13 21 21 C 1.53046 * 109.53571 * 61.24017 * 11 10 9 22 22 C 1.46923 * 120.62800 * 5.18663 * 8 6 5 23 23 C 1.53001 * 109.46825 * 185.00141 * 3 2 1 24 24 H 1.09007 * 110.33023 * 300.69878 * 23 3 2 25 25 C 1.54476 * 110.37178 * 178.44856 * 23 3 2 26 26 C 1.54511 * 104.06434 * 217.18747 * 25 23 3 27 27 C 1.54471 * 104.06034 * 0.02562 * 26 25 23 28 28 O 1.44424 * 110.37644 * 62.94963 * 23 3 2 29 29 H 1.08988 * 109.47134 * 60.00116 * 1 2 3 30 30 H 1.08998 * 109.47127 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46974 * 299.99720 * 1 2 3 32 32 H 1.09004 * 109.47167 * 239.99594 * 2 1 3 33 33 H 1.09005 * 109.47250 * 120.00047 * 2 1 3 34 34 H 0.97005 * 120.00509 * 94.99962 * 5 3 2 35 35 H 1.08998 * 109.58603 * 353.41878 * 9 8 6 36 36 H 1.08999 * 109.58326 * 113.84581 * 9 8 6 37 37 H 1.09001 * 109.56664 * 185.55384 * 10 9 8 38 38 H 1.09002 * 109.36356 * 65.49698 * 10 9 8 39 39 H 1.09001 * 109.45955 * 301.22355 * 11 10 9 40 40 H 1.09001 * 109.47294 * 184.93905 * 12 11 10 41 41 H 1.09002 * 109.47454 * 304.93610 * 12 11 10 42 42 H 0.97002 * 120.00417 * 180.02562 * 16 15 13 43 43 H 1.09004 * 109.49278 * 178.68564 * 21 11 10 44 44 H 1.08997 * 109.52324 * 58.60230 * 21 11 10 45 45 H 1.09005 * 109.58496 * 246.15311 * 22 8 6 46 46 H 1.09000 * 109.59120 * 6.43213 * 22 8 6 47 47 H 1.09000 * 110.51479 * 335.83511 * 25 23 3 48 48 H 1.08998 * 110.51300 * 98.40753 * 25 23 3 49 49 H 1.09003 * 110.50829 * 118.64772 * 26 25 23 50 50 H 1.08999 * 110.51219 * 241.21917 * 26 25 23 51 51 H 1.09000 * 110.37291 * 142.80992 * 27 26 25 52 52 H 1.09002 * 110.37524 * 265.02943 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 -0.8418 5 7 1.6525 2.0975 1.2517 6 6 0.4331 2.6596 1.3688 7 8 -0.3075 2.7112 0.4058 8 7 0.0346 3.1643 2.5533 9 6 -1.3293 3.6829 2.7252 10 6 -1.2547 5.1078 3.2710 11 6 -0.4120 5.1189 4.5485 12 6 -0.3622 6.5397 5.1135 13 6 -1.7448 6.9585 5.5426 14 1 -2.5760 6.2792 5.4237 15 6 -1.9487 8.2087 6.0870 16 7 -0.9367 9.0361 6.2313 17 14 -3.6626 8.7280 6.6181 18 1 -3.8774 8.3479 8.0375 19 1 -3.8013 10.1994 6.4732 20 1 -4.6718 8.0494 5.7659 21 6 1.0085 4.6473 4.2286 22 6 0.9577 3.2121 3.6952 23 6 3.5648 1.4444 -0.1258 24 1 4.0139 0.8976 0.7035 25 6 4.0993 2.8931 -0.1670 26 6 5.2707 2.8327 -1.1727 27 6 5.3049 1.3548 -1.6206 28 8 3.9661 0.8645 -1.3862 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5139 0.8900 34 1 2.2719 2.1232 1.9978 35 1 -1.8423 3.6880 1.7634 36 1 -1.8737 3.0531 3.4288 37 1 -2.2595 5.4660 3.4950 38 1 -0.7943 5.7566 2.5258 39 1 -0.8593 4.4508 5.2844 40 1 0.3082 6.5659 5.9726 41 1 0.0029 7.2232 4.3469 42 1 -1.0800 9.9156 6.6146 43 1 1.6144 4.6777 5.1342 44 1 1.4480 5.3003 3.4747 45 1 0.6036 2.5430 4.4796 46 1 1.9527 2.9041 3.3740 47 1 3.3266 3.5754 -0.5212 48 1 4.4540 3.1975 0.8177 49 1 5.0770 3.4852 -2.0241 50 1 6.2063 3.1087 -0.6863 51 1 5.5557 1.2848 -2.6790 52 1 6.0237 0.7938 -1.0233 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581940672.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:26:07 Heat of formation + Delta-G solvation = -112.771137 kcal Electronic energy + Delta-G solvation = -28967.957478 eV Core-core repulsion = 25158.787288 eV Total energy + Delta-G solvation = -3809.170190 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.69933 -40.42121 -38.93394 -36.73754 -35.71218 -34.17123 -33.27099 -32.80381 -31.82408 -30.71809 -29.60596 -26.76973 -26.14880 -24.12413 -23.67189 -23.37056 -22.05879 -21.90651 -21.35109 -20.48799 -19.06624 -18.38592 -17.88457 -17.03129 -16.96563 -16.52952 -16.46610 -16.22330 -15.51095 -15.33546 -15.09276 -15.01562 -14.69730 -14.62650 -14.43241 -14.23235 -14.01169 -13.78385 -13.62323 -13.34080 -13.00529 -12.97163 -12.74021 -12.65142 -12.48204 -12.38327 -12.30955 -12.19220 -12.08728 -11.82196 -11.74561 -11.72441 -11.48567 -11.30530 -11.17684 -11.01296 -10.78769 -10.73956 -10.51117 -10.11000 -9.42097 -8.16705 -6.25326 1.40375 1.41288 1.51758 1.58413 2.18437 2.42439 2.73220 3.17109 3.18234 3.45814 3.70923 3.94246 3.97191 4.02241 4.07249 4.11340 4.16837 4.21140 4.25626 4.33773 4.44934 4.45637 4.52272 4.57885 4.67859 4.71182 4.80736 4.84138 4.88873 4.92165 4.96721 4.98919 5.01329 5.07164 5.09376 5.12879 5.15678 5.19470 5.32967 5.35354 5.40846 5.45768 5.55178 5.56839 5.63862 5.83152 5.88728 5.91475 6.02645 6.31013 6.91584 7.00285 7.43182 7.61017 8.95068 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.020779 B = 0.002581 C = 0.002394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.188605 B =10846.352715 C =11691.361627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.123 4.123 3 C 0.172 3.828 4 H 0.063 0.937 5 N -0.725 5.725 6 C 0.709 3.291 7 O -0.626 6.626 8 N -0.625 5.625 9 C 0.138 3.862 10 C -0.110 4.110 11 C -0.072 4.072 12 C 0.033 3.967 13 C -0.527 4.527 14 H 0.062 0.938 15 C -0.002 4.002 16 N -0.936 5.936 17 Si 0.957 3.043 18 H -0.272 1.272 19 H -0.287 1.287 20 H -0.264 1.264 21 C -0.124 4.124 22 C 0.119 3.881 23 C 0.076 3.924 24 H 0.096 0.904 25 C -0.152 4.152 26 C -0.154 4.154 27 C 0.041 3.959 28 O -0.387 6.387 29 H 0.036 0.964 30 H 0.057 0.943 31 H 0.038 0.962 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.407 0.593 35 H 0.075 0.925 36 H 0.077 0.923 37 H 0.066 0.934 38 H 0.036 0.964 39 H 0.064 0.936 40 H -0.008 1.008 41 H -0.018 1.018 42 H 0.261 0.739 43 H 0.081 0.919 44 H 0.048 0.952 45 H 0.086 0.914 46 H 0.102 0.898 47 H 0.055 0.945 48 H 0.093 0.907 49 H 0.069 0.931 50 H 0.095 0.905 51 H 0.100 0.900 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.062 -19.855 -11.038 26.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.162 4.162 3 C 0.066 3.934 4 H 0.082 0.918 5 N -0.384 5.384 6 C 0.410 3.590 7 O -0.507 6.507 8 N -0.361 5.361 9 C 0.015 3.985 10 C -0.149 4.149 11 C -0.090 4.090 12 C -0.004 4.004 13 C -0.565 4.565 14 H 0.081 0.919 15 C -0.199 4.199 16 N -0.577 5.577 17 Si 0.782 3.218 18 H -0.198 1.198 19 H -0.213 1.213 20 H -0.188 1.188 21 C -0.162 4.162 22 C -0.003 4.003 23 C 0.018 3.982 24 H 0.114 0.886 25 C -0.190 4.190 26 C -0.191 4.191 27 C -0.035 4.035 28 O -0.306 6.306 29 H 0.055 0.945 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.246 0.754 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.055 0.945 39 H 0.082 0.918 40 H 0.011 0.989 41 H 0.000 1.000 42 H 0.070 0.930 43 H 0.100 0.900 44 H 0.067 0.933 45 H 0.105 0.895 46 H 0.120 0.880 47 H 0.073 0.927 48 H 0.112 0.888 49 H 0.088 0.912 50 H 0.114 0.886 51 H 0.118 0.882 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 13.455 -19.822 -11.824 26.716 hybrid contribution -0.618 1.401 0.749 1.705 sum 12.837 -18.421 -11.075 25.035 Atomic orbital electron populations 1.21669 0.96231 1.00481 1.01062 1.21872 0.95612 0.95502 1.03207 1.20641 0.93098 0.93502 0.86130 0.91827 1.44937 1.15209 1.60991 1.17265 1.15825 0.82310 0.78056 0.82764 1.90888 1.55915 1.65524 1.38333 1.47354 1.14238 1.64113 1.10417 1.21326 0.82057 0.93827 1.01305 1.21684 1.00866 0.95604 0.96703 1.21019 0.95065 0.97015 0.95941 1.19013 0.95294 0.92157 0.93895 1.21688 0.95544 0.99739 1.39570 0.91940 1.25919 1.00688 0.97051 0.96286 1.70093 1.32685 1.08406 1.46508 0.85570 0.80169 0.77164 0.78912 1.19776 1.21278 1.18835 1.21932 0.96981 0.96151 1.01144 1.21789 0.93533 0.96770 0.88234 1.23126 0.92992 0.93744 0.88350 0.88610 1.22983 0.98213 0.96373 1.01393 1.22948 0.99321 0.97484 0.99374 1.23613 0.83910 0.93172 1.02810 1.89116 1.31996 1.70830 1.38617 0.94487 0.92431 0.94289 0.90272 0.90376 0.75358 0.90696 0.90438 0.91585 0.94516 0.91759 0.98934 0.99951 0.93043 0.90008 0.93323 0.89536 0.88037 0.92657 0.88811 0.91188 0.88626 0.88163 0.90441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 8.58 71.98 0.62 -2.63 16 2 C -0.12 -2.34 5.56 30.60 0.17 -2.17 16 3 C 0.17 3.46 1.93 44.99 0.09 3.55 16 4 H 0.06 1.74 7.51 -2.39 -0.02 1.72 16 5 N -0.72 -14.54 4.61 -457.83 -2.11 -16.65 16 6 C 0.71 20.09 6.66 179.05 1.19 21.28 16 7 O -0.63 -22.74 13.31 -4.00 -0.05 -22.80 16 8 N -0.62 -16.91 2.98 -837.73 -2.50 -19.40 16 9 C 0.14 4.25 6.41 86.22 0.55 4.80 16 10 C -0.11 -4.06 5.17 30.53 0.16 -3.90 16 11 C -0.07 -2.70 2.10 -10.77 -0.02 -2.73 16 12 C 0.03 1.69 4.45 29.85 0.13 1.83 16 13 C -0.53 -29.07 8.39 25.60 0.21 -28.85 16 14 H 0.06 3.29 7.05 -2.91 -0.02 3.27 16 15 C 0.00 -0.13 5.46 84.65 0.46 0.33 16 16 N -0.94 -56.80 13.29 21.45 0.28 -56.52 16 17 Si 0.96 44.18 29.54 68.60 2.03 46.20 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 19 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 20 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 21 C -0.12 -3.58 5.36 30.67 0.16 -3.42 16 22 C 0.12 2.52 6.39 86.36 0.55 3.08 16 23 C 0.08 1.15 2.86 31.10 0.09 1.24 16 24 H 0.10 1.03 8.14 -2.38 -0.02 1.01 16 25 C -0.15 -2.20 6.32 31.61 0.20 -2.00 16 26 C -0.15 -1.77 7.09 31.61 0.22 -1.54 16 27 C 0.04 0.47 7.63 72.48 0.55 1.03 16 28 O -0.39 -6.83 10.77 -148.98 -1.61 -8.44 16 29 H 0.04 1.02 7.92 -2.39 -0.02 1.01 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.04 1.06 5.74 -2.39 -0.01 1.05 16 32 H 0.08 1.48 7.67 -2.38 -0.02 1.46 16 33 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.41 5.72 6.09 -92.70 -0.56 5.15 16 35 H 0.07 2.50 6.99 -2.39 -0.02 2.49 16 36 H 0.08 2.13 8.14 -2.39 -0.02 2.12 16 37 H 0.07 2.64 6.91 -2.39 -0.02 2.62 16 38 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 40 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 41 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 42 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 43 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 45 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 46 H 0.10 1.44 5.64 -2.39 -0.01 1.42 16 47 H 0.05 1.09 7.87 -2.39 -0.02 1.07 16 48 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 50 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 51 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 52 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -71.57 394.16 1.71 -69.85 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.32 Total: 17.86 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: 5.35 Total: -10.11 kcal Atomic # 7 Polarization: -88.25 SS G_CDS: -4.32 Total: -92.57 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -1.66 Total: -31.24 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.20 kcal Total: -71.57 1.71 -69.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581940672.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.917 kcal (2) G-P(sol) polarization free energy of solvation -71.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds