Wall clock time and date at job start Tue Mar 31 2020 13:42:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53007 * 109.46779 * 2 1
4 4 C 1.50696 * 109.47067 * 240.00455 * 2 1 3
5 5 O 1.21284 * 120.00584 * 13.48835 * 4 2 1
6 6 N 1.34782 * 119.99664 * 193.49332 * 4 2 1
7 7 C 1.46918 * 120.63054 * 3.16883 * 6 4 2
8 8 C 1.52761 * 109.00824 * 233.58330 * 7 6 4
9 9 C 1.53042 * 109.38290 * 305.58898 * 8 7 6
10 10 C 1.53000 * 109.46010 * 181.25927 * 9 8 7
11 11 C 1.50701 * 109.47184 * 64.93073 * 10 9 8
12 12 H 1.08001 * 120.00151 * 0.02562 * 11 10 9
13 13 C 1.37878 * 120.00063 * 179.97438 * 11 10 9
14 14 N 1.31520 * 119.99685 * 180.02562 * 13 11 10
15 15 Si 1.86801 * 119.99953 * 0.02562 * 13 11 10
16 16 H 1.48497 * 109.46904 * 89.99853 * 15 13 11
17 17 H 1.48499 * 109.46979 * 209.99841 * 15 13 11
18 18 H 1.48492 * 109.47193 * 329.99727 * 15 13 11
19 19 C 1.53037 * 109.53922 * 61.23936 * 9 8 7
20 20 C 1.46925 * 120.62791 * 183.44526 * 6 4 2
21 21 N 1.46899 * 109.47139 * 119.99951 * 2 1 3
22 22 C 1.47019 * 110.99706 * 63.63754 * 21 2 1
23 23 C 1.53094 * 109.25400 * 177.60797 * 22 21 2
24 24 O 1.43014 * 109.25988 * 56.85028 * 23 22 21
25 25 C 1.43011 * 113.73572 * 301.32539 * 24 23 22
26 26 C 1.47015 * 110.99839 * 300.00279 * 21 2 1
27 27 H 1.09000 * 109.47199 * 60.00149 * 1 2 3
28 28 H 1.08999 * 109.47567 * 299.99962 * 1 2 3
29 29 H 1.09000 * 109.47096 * 179.97438 * 1 2 3
30 30 H 1.09002 * 109.46851 * 60.00196 * 3 2 1
31 31 H 1.09002 * 109.46547 * 179.97438 * 3 2 1
32 32 H 1.09000 * 109.47133 * 299.99891 * 3 2 1
33 33 H 1.08995 * 109.59271 * 353.41770 * 7 6 4
34 34 H 1.09002 * 109.58995 * 113.84271 * 7 6 4
35 35 H 1.09004 * 109.56544 * 185.55765 * 8 7 6
36 36 H 1.08994 * 109.36348 * 65.49824 * 8 7 6
37 37 H 1.09004 * 109.46197 * 301.21511 * 9 8 7
38 38 H 1.09004 * 109.47308 * 184.93200 * 10 9 8
39 39 H 1.08994 * 109.47417 * 304.93328 * 10 9 8
40 40 H 0.97005 * 119.99132 * 180.02562 * 14 13 11
41 41 H 1.08997 * 109.50092 * 178.68250 * 19 9 8
42 42 H 1.09003 * 109.52419 * 58.59887 * 19 9 8
43 43 H 1.08998 * 109.58753 * 246.15606 * 20 6 4
44 44 H 1.08999 * 109.59212 * 6.44014 * 20 6 4
45 45 H 1.08997 * 109.50578 * 297.54188 * 22 21 2
46 46 H 1.08996 * 109.50601 * 57.67116 * 22 21 2
47 47 H 1.09006 * 109.50837 * 296.91160 * 23 22 21
48 48 H 1.09005 * 109.54033 * 176.80728 * 23 22 21
49 49 H 1.08999 * 109.51052 * 298.73521 * 25 24 23
50 50 H 1.09007 * 109.54246 * 178.62915 * 25 24 23
51 51 H 1.08996 * 109.50962 * 302.32272 * 26 21 2
52 52 H 1.09000 * 109.50867 * 62.46079 * 26 21 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 2.0323 -0.7103 -1.2305
5 8 1.2716 -0.9542 -2.1430
6 7 3.3271 -1.0746 -1.3169
7 6 4.2449 -0.8486 -0.1922
8 6 5.4620 -0.0721 -0.6916
9 6 6.0877 -0.8145 -1.8746
10 6 7.3253 -0.0547 -2.3563
11 6 8.3751 -0.0677 -1.2751
12 1 8.1793 -0.5682 -0.3383
13 6 9.5859 0.5585 -1.4823
14 7 10.5022 0.5467 -0.5389
15 14 9.9248 1.4235 -3.1029
16 1 9.4901 2.8403 -3.0081
17 1 11.3793 1.3707 -3.3974
18 1 9.1745 0.7473 -4.1913
19 6 5.0716 -0.9089 -3.0150
20 6 3.8487 -1.6999 -2.5398
21 7 2.0197 -0.6925 1.1994
22 6 1.6206 -2.1074 1.1906
23 6 2.2006 -2.8032 2.4248
24 8 1.7570 -2.1229 3.6020
25 6 2.1289 -0.7427 3.6438
26 6 1.5482 -0.0258 2.4220
27 1 -0.3633 0.5138 -0.8900
28 1 -0.3634 0.5138 0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 1.6766 1.9564 0.8900
31 1 3.1300 1.4425 0.0005
32 1 1.6766 1.9564 -0.8900
33 1 3.7388 -0.2728 0.5826
34 1 4.5680 -1.8070 0.2142
35 1 6.1940 0.0152 0.1114
36 1 5.1504 0.9226 -1.0101
37 1 6.3768 -1.8179 -1.5618
38 1 7.7203 -0.5342 -3.2520
39 1 7.0529 0.9753 -2.5857
40 1 11.3539 0.9876 -0.6846
41 1 5.5255 -1.4171 -3.8657
42 1 4.7633 0.0935 -3.3122
43 1 4.1388 -2.7292 -2.3288
44 1 3.0803 -1.6881 -3.3128
45 1 0.5332 -2.1791 1.2097
46 1 2.0018 -2.5875 0.2893
47 1 3.2894 -2.7785 2.3787
48 1 1.8609 -3.8386 2.4530
49 1 3.2156 -0.6580 3.6331
50 1 1.7373 -0.2869 4.5533
51 1 1.8766 1.0135 2.4196
52 1 0.4596 -0.0642 2.4608
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000582361865.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:42:45
Heat of formation + Delta-G solvation = -69.476813 kcal
Electronic energy + Delta-G solvation = -30509.168846 eV
Core-core repulsion = 26701.876039 eV
Total energy + Delta-G solvation = -3807.292807 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 0.89 seconds
Orbital eigenvalues (eV)
-41.21814 -39.26253 -37.59303 -36.59424 -34.00098 -32.29896 -32.12409 -31.46357
-30.67422 -28.58677 -27.57801 -26.86737 -25.23380 -24.15242 -22.98902 -22.53185
-21.30877 -20.24684 -19.55597 -18.44298 -17.66329 -16.72609 -16.46496 -16.05809
-15.77747 -15.42152 -15.26577 -14.86948 -14.70497 -14.56151 -14.29065 -13.92002
-13.69463 -13.25488 -13.19813 -13.03551 -12.67886 -12.58769 -12.33831 -12.28069
-12.16581 -12.10679 -11.95350 -11.66283 -11.56422 -11.38722 -11.26810 -11.11294
-10.80121 -10.71592 -10.64490 -10.29116 -9.96499 -9.86193 -9.75811 -9.54939
-9.46566 -9.05905 -8.54055 -8.45138 -8.31817 -6.04663 -4.01637 2.57808
3.14796 3.29763 3.37826 3.39159 3.41593 3.64907 4.30022 4.45036
4.59583 4.64091 4.75167 4.77485 4.85903 4.97381 5.03564 5.23347
5.25580 5.29660 5.36128 5.37995 5.39269 5.40829 5.44176 5.51327
5.56791 5.60507 5.61791 5.63836 5.69840 5.72934 5.91676 5.94548
5.99216 6.02799 6.24770 6.31010 6.36497 6.50760 6.53877 6.56253
6.69927 6.85252 6.89528 6.90123 7.03743 7.28485 7.44130 7.62005
7.80285 8.26137 8.53876 9.00326 9.58875 11.08591
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.015391 B = 0.003709 C = 0.003341
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1818.790883 B = 7547.576917 C = 8379.943625
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.090 3.910
3 C -0.146 4.146
4 C 0.527 3.473
5 O -0.554 6.554
6 N -0.590 5.590
7 C 0.088 3.912
8 C -0.122 4.122
9 C -0.072 4.072
10 C -0.009 4.009
11 C -0.514 4.514
12 H 0.073 0.927
13 C 0.066 3.934
14 N -0.905 5.905
15 Si 0.877 3.123
16 H -0.278 1.278
17 H -0.289 1.289
18 H -0.266 1.266
19 C -0.130 4.130
20 C 0.110 3.890
21 N -0.514 5.514
22 C 0.010 3.990
23 C 0.066 3.934
24 O -0.386 6.386
25 C 0.063 3.937
26 C 0.008 3.992
27 H 0.072 0.928
28 H 0.063 0.937
29 H 0.061 0.939
30 H 0.069 0.931
31 H 0.079 0.921
32 H 0.067 0.933
33 H 0.127 0.873
34 H 0.058 0.942
35 H 0.087 0.913
36 H 0.053 0.947
37 H 0.062 0.938
38 H 0.014 0.986
39 H 0.009 0.991
40 H 0.262 0.738
41 H 0.068 0.932
42 H 0.059 0.941
43 H 0.063 0.937
44 H 0.082 0.918
45 H 0.050 0.950
46 H 0.087 0.913
47 H 0.064 0.936
48 H 0.097 0.903
49 H 0.064 0.936
50 H 0.098 0.902
51 H 0.094 0.906
52 H 0.050 0.950
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.060 -2.076 5.652 20.944
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.222 4.222
2 C -0.002 4.002
3 C -0.204 4.204
4 C 0.313 3.687
5 O -0.433 6.433
6 N -0.321 5.321
7 C -0.034 4.034
8 C -0.160 4.160
9 C -0.091 4.091
10 C -0.046 4.046
11 C -0.552 4.552
12 H 0.092 0.908
13 C -0.135 4.135
14 N -0.544 5.544
15 Si 0.705 3.295
16 H -0.204 1.204
17 H -0.215 1.215
18 H -0.191 1.191
19 C -0.168 4.168
20 C -0.013 4.013
21 N -0.240 5.240
22 C -0.118 4.118
23 C -0.011 4.011
24 O -0.304 6.304
25 C -0.014 4.014
26 C -0.120 4.120
27 H 0.091 0.909
28 H 0.082 0.918
29 H 0.080 0.920
30 H 0.088 0.912
31 H 0.098 0.902
32 H 0.086 0.914
33 H 0.144 0.856
34 H 0.076 0.924
35 H 0.105 0.895
36 H 0.072 0.928
37 H 0.081 0.919
38 H 0.032 0.968
39 H 0.028 0.972
40 H 0.072 0.928
41 H 0.087 0.913
42 H 0.078 0.922
43 H 0.081 0.919
44 H 0.100 0.900
45 H 0.068 0.932
46 H 0.105 0.895
47 H 0.083 0.917
48 H 0.115 0.885
49 H 0.083 0.917
50 H 0.116 0.884
51 H 0.112 0.888
52 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges -19.852 -2.232 5.346 20.680
hybrid contribution -0.193 0.623 -1.173 1.342
sum -20.045 -1.609 4.173 20.538
Atomic orbital electron populations
1.22213 0.94232 1.02942 1.02840 1.21295 0.94593 0.95628 0.88664
1.22018 1.03246 0.92267 1.02839 1.20181 0.82082 0.78501 0.87904
1.90669 1.55779 1.56151 1.40663 1.48134 1.08641 1.58891 1.16451
1.22506 0.90850 1.01291 0.88775 1.21879 0.96118 0.98231 0.99751
1.21006 0.94749 0.99774 0.93544 1.19618 0.93170 0.94855 0.97005
1.21133 0.97903 1.34633 1.01489 0.90845 1.25019 0.96174 0.95974
0.96302 1.69918 1.06543 1.44645 1.33278 0.86825 0.77231 0.80343
0.85143 1.20432 1.21513 1.19116 1.22038 0.95351 1.00138 0.99315
1.21654 0.96583 0.96114 0.86929 1.62809 1.57384 1.02387 1.01380
1.22899 0.99543 0.88988 1.00365 1.22655 0.99418 0.95776 0.83274
1.87980 1.78659 1.22631 1.41141 1.22686 1.00096 0.81538 0.97080
1.22977 0.99080 0.99841 0.90107 0.90862 0.91767 0.92019 0.91188
0.90180 0.91381 0.85581 0.92380 0.89465 0.92795 0.91906 0.96776
0.97231 0.92840 0.91338 0.92239 0.91860 0.89958 0.93193 0.89482
0.91734 0.88478 0.91738 0.88422 0.88797 0.93168
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.68 7.16 37.16 0.27 -1.41 16
2 C 0.09 0.99 0.29 -132.75 -0.04 0.95 16
3 C -0.15 -1.46 7.97 37.16 0.30 -1.16 16
4 C 0.53 7.45 5.04 -10.99 -0.06 7.39 16
5 O -0.55 -9.50 15.41 5.55 0.09 -9.42 16
6 N -0.59 -8.25 2.69 -173.04 -0.47 -8.72 16
7 C 0.09 1.19 4.64 -3.94 -0.02 1.17 16
8 C -0.12 -2.04 5.12 -26.83 -0.14 -2.17 16
9 C -0.07 -1.33 2.10 -90.58 -0.19 -1.52 16
10 C -0.01 -0.21 3.52 -27.88 -0.10 -0.31 16
11 C -0.51 -13.93 8.94 -34.44 -0.31 -14.24 16
12 H 0.07 2.12 7.30 -52.49 -0.38 1.74 16
13 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16
14 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16
15 Si 0.88 21.49 27.47 -169.99 -4.67 16.82 16
16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
17 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16
18 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16
19 C -0.13 -2.07 5.36 -26.61 -0.14 -2.21 16
20 C 0.11 1.58 6.43 -3.71 -0.02 1.55 16
21 N -0.51 -5.03 1.55 -220.00 -0.34 -5.37 16
22 C 0.01 0.10 4.65 -3.71 -0.02 0.08 16
23 C 0.07 0.62 7.01 37.21 0.26 0.88 16
24 O -0.39 -4.00 10.83 -35.23 -0.38 -4.38 16
25 C 0.06 0.52 7.01 37.21 0.26 0.78 16
26 C 0.01 0.06 4.87 -3.71 -0.02 0.04 16
27 H 0.07 0.81 7.95 -51.93 -0.41 0.40 16
28 H 0.06 0.54 6.46 -51.93 -0.34 0.20 16
29 H 0.06 0.68 6.54 -51.93 -0.34 0.34 16
30 H 0.07 0.55 6.35 -51.93 -0.33 0.22 16
31 H 0.08 0.89 6.04 -51.93 -0.31 0.57 16
32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16
33 H 0.13 1.55 3.53 -51.93 -0.18 1.37 16
34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16
35 H 0.09 1.64 6.91 -51.93 -0.36 1.28 16
36 H 0.05 0.91 7.84 -51.93 -0.41 0.50 16
37 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16
38 H 0.01 0.33 7.20 -51.93 -0.37 -0.05 16
39 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16
40 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16
41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16
42 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16
43 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16
44 H 0.08 1.23 7.02 -51.93 -0.36 0.86 16
45 H 0.05 0.51 6.52 -51.93 -0.34 0.18 16
46 H 0.09 0.99 6.62 -51.93 -0.34 0.65 16
47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
48 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16
49 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16
50 H 0.10 0.64 8.14 -51.92 -0.42 0.21 16
51 H 0.09 0.66 6.19 -51.93 -0.32 0.33 16
52 H 0.05 0.41 6.44 -51.93 -0.33 0.07 16
LS Contribution 374.46 15.07 5.64 5.64
Total: -1.00 -31.39 374.46 -8.34 -39.74
By element:
Atomic # 1 Polarization: 9.51 SS G_CDS: -8.93 Total: 0.58 kcal
Atomic # 6 Polarization: -8.32 SS G_CDS: -0.06 Total: -8.38 kcal
Atomic # 7 Polarization: -40.57 SS G_CDS: -0.03 Total: -40.60 kcal
Atomic # 8 Polarization: -13.50 SS G_CDS: -0.30 Total: -13.80 kcal
Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal
Total LS contribution 5.64 Total: 5.64 kcal
Total: -31.39 -8.34 -39.74 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000582361865.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -29.740 kcal
(2) G-P(sol) polarization free energy of solvation -31.392 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.132 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.345 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.737 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.477 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.89 seconds