Wall clock time and date at job start Tue Mar 31 2020 13:42:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53007 * 109.46779 * 2 1
4 4 C 1.50696 * 109.47067 * 240.00455 * 2 1 3
5 5 O 1.21284 * 120.00584 * 13.48835 * 4 2 1
6 6 N 1.34782 * 119.99664 * 193.49332 * 4 2 1
7 7 C 1.46918 * 120.63054 * 3.16883 * 6 4 2
8 8 C 1.52761 * 109.00824 * 233.58330 * 7 6 4
9 9 C 1.53042 * 109.38290 * 305.58898 * 8 7 6
10 10 C 1.53000 * 109.46010 * 181.25927 * 9 8 7
11 11 C 1.50701 * 109.47184 * 64.93073 * 10 9 8
12 12 H 1.08001 * 120.00151 * 0.02562 * 11 10 9
13 13 C 1.37878 * 120.00063 * 179.97438 * 11 10 9
14 14 N 1.31520 * 119.99685 * 180.02562 * 13 11 10
15 15 Si 1.86801 * 119.99953 * 0.02562 * 13 11 10
16 16 H 1.48497 * 109.46904 * 89.99853 * 15 13 11
17 17 H 1.48499 * 109.46979 * 209.99841 * 15 13 11
18 18 H 1.48492 * 109.47193 * 329.99727 * 15 13 11
19 19 C 1.53037 * 109.53922 * 61.23936 * 9 8 7
20 20 C 1.46925 * 120.62791 * 183.44526 * 6 4 2
21 21 N 1.46899 * 109.47139 * 119.99951 * 2 1 3
22 22 C 1.47019 * 110.99706 * 63.63754 * 21 2 1
23 23 C 1.53094 * 109.25400 * 177.60797 * 22 21 2
24 24 O 1.43014 * 109.25988 * 56.85028 * 23 22 21
25 25 C 1.43011 * 113.73572 * 301.32539 * 24 23 22
26 26 C 1.47015 * 110.99839 * 300.00279 * 21 2 1
27 27 H 1.09000 * 109.47199 * 60.00149 * 1 2 3
28 28 H 1.08999 * 109.47567 * 299.99962 * 1 2 3
29 29 H 1.09000 * 109.47096 * 179.97438 * 1 2 3
30 30 H 1.09002 * 109.46851 * 60.00196 * 3 2 1
31 31 H 1.09002 * 109.46547 * 179.97438 * 3 2 1
32 32 H 1.09000 * 109.47133 * 299.99891 * 3 2 1
33 33 H 1.08995 * 109.59271 * 353.41770 * 7 6 4
34 34 H 1.09002 * 109.58995 * 113.84271 * 7 6 4
35 35 H 1.09004 * 109.56544 * 185.55765 * 8 7 6
36 36 H 1.08994 * 109.36348 * 65.49824 * 8 7 6
37 37 H 1.09004 * 109.46197 * 301.21511 * 9 8 7
38 38 H 1.09004 * 109.47308 * 184.93200 * 10 9 8
39 39 H 1.08994 * 109.47417 * 304.93328 * 10 9 8
40 40 H 0.97005 * 119.99132 * 180.02562 * 14 13 11
41 41 H 1.08997 * 109.50092 * 178.68250 * 19 9 8
42 42 H 1.09003 * 109.52419 * 58.59887 * 19 9 8
43 43 H 1.08998 * 109.58753 * 246.15606 * 20 6 4
44 44 H 1.08999 * 109.59212 * 6.44014 * 20 6 4
45 45 H 1.08997 * 109.50578 * 297.54188 * 22 21 2
46 46 H 1.08996 * 109.50601 * 57.67116 * 22 21 2
47 47 H 1.09006 * 109.50837 * 296.91160 * 23 22 21
48 48 H 1.09005 * 109.54033 * 176.80728 * 23 22 21
49 49 H 1.08999 * 109.51052 * 298.73521 * 25 24 23
50 50 H 1.09007 * 109.54246 * 178.62915 * 25 24 23
51 51 H 1.08996 * 109.50962 * 302.32272 * 26 21 2
52 52 H 1.09000 * 109.50867 * 62.46079 * 26 21 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 6 2.0323 -0.7103 -1.2305
5 8 1.2716 -0.9542 -2.1430
6 7 3.3271 -1.0746 -1.3169
7 6 4.2449 -0.8486 -0.1922
8 6 5.4620 -0.0721 -0.6916
9 6 6.0877 -0.8145 -1.8746
10 6 7.3253 -0.0547 -2.3563
11 6 8.3751 -0.0677 -1.2751
12 1 8.1793 -0.5682 -0.3383
13 6 9.5859 0.5585 -1.4823
14 7 10.5022 0.5467 -0.5389
15 14 9.9248 1.4235 -3.1029
16 1 9.4901 2.8403 -3.0081
17 1 11.3793 1.3707 -3.3974
18 1 9.1745 0.7473 -4.1913
19 6 5.0716 -0.9089 -3.0150
20 6 3.8487 -1.6999 -2.5398
21 7 2.0197 -0.6925 1.1994
22 6 1.6206 -2.1074 1.1906
23 6 2.2006 -2.8032 2.4248
24 8 1.7570 -2.1229 3.6020
25 6 2.1289 -0.7427 3.6438
26 6 1.5482 -0.0258 2.4220
27 1 -0.3633 0.5138 -0.8900
28 1 -0.3634 0.5138 0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 1.6766 1.9564 0.8900
31 1 3.1300 1.4425 0.0005
32 1 1.6766 1.9564 -0.8900
33 1 3.7388 -0.2728 0.5826
34 1 4.5680 -1.8070 0.2142
35 1 6.1940 0.0152 0.1114
36 1 5.1504 0.9226 -1.0101
37 1 6.3768 -1.8179 -1.5618
38 1 7.7203 -0.5342 -3.2520
39 1 7.0529 0.9753 -2.5857
40 1 11.3539 0.9876 -0.6846
41 1 5.5255 -1.4171 -3.8657
42 1 4.7633 0.0935 -3.3122
43 1 4.1388 -2.7292 -2.3288
44 1 3.0803 -1.6881 -3.3128
45 1 0.5332 -2.1791 1.2097
46 1 2.0018 -2.5875 0.2893
47 1 3.2894 -2.7785 2.3787
48 1 1.8609 -3.8386 2.4530
49 1 3.2156 -0.6580 3.6331
50 1 1.7373 -0.2869 4.5533
51 1 1.8766 1.0135 2.4196
52 1 0.4596 -0.0642 2.4608
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000582361865.mol2 52
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:42:43
Heat of formation + Delta-G solvation = -88.406757 kcal
Electronic energy + Delta-G solvation = -30509.989710 eV
Core-core repulsion = 26701.876039 eV
Total energy + Delta-G solvation = -3808.113671 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 324.220 amu
Computer time = 1.12 seconds
Orbital eigenvalues (eV)
-42.18891 -40.19808 -38.85993 -37.51393 -35.63725 -34.02026 -33.10135 -32.26874
-31.84596 -30.29924 -28.38758 -27.65234 -26.59997 -25.13990 -24.14599 -23.83328
-22.58025 -21.36133 -20.77603 -19.56134 -18.85184 -18.57899 -17.26214 -17.14734
-16.67127 -16.37268 -16.31607 -15.96128 -15.77975 -15.63305 -15.47146 -15.11919
-15.05144 -14.81818 -14.38625 -14.23449 -14.10541 -13.68310 -13.49631 -13.41723
-13.12584 -13.08845 -12.98162 -12.85349 -12.73195 -12.46528 -12.38181 -12.32909
-12.08326 -12.01459 -11.93466 -11.71346 -11.43491 -11.36381 -11.13273 -10.91019
-10.81207 -10.70795 -10.53753 -9.57010 -9.27546 -8.23759 -6.24819 1.35905
1.38256 1.48916 1.49651 2.05012 2.38779 2.58295 2.97531 3.12029
3.33370 3.81248 3.84643 3.92362 3.98356 4.02037 4.06354 4.11366
4.15670 4.27445 4.30263 4.35574 4.46976 4.53303 4.60383 4.62120
4.66602 4.67951 4.71039 4.76435 4.82437 4.86919 4.89298 4.91274
4.96946 5.00469 5.05026 5.13436 5.15323 5.18943 5.27558 5.35738
5.41617 5.44995 5.64937 5.73086 5.75938 5.79179 5.83046 6.20731
6.36645 6.48397 6.82434 7.13536 7.38926 8.92476
Molecular weight = 324.22amu
Principal moments of inertia in cm(-1)
A = 0.015391 B = 0.003709 C = 0.003341
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1818.790883 B = 7547.576917 C = 8379.943625
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.157 4.157
2 C 0.095 3.905
3 C -0.144 4.144
4 C 0.524 3.476
5 O -0.586 6.586
6 N -0.591 5.591
7 C 0.103 3.897
8 C -0.115 4.115
9 C -0.069 4.069
10 C -0.007 4.007
11 C -0.513 4.513
12 H 0.042 0.958
13 C 0.006 3.994
14 N -0.951 5.951
15 Si 0.940 3.060
16 H -0.270 1.270
17 H -0.288 1.288
18 H -0.251 1.251
19 C -0.120 4.120
20 C 0.112 3.888
21 N -0.518 5.518
22 C 0.015 3.985
23 C 0.068 3.932
24 O -0.400 6.400
25 C 0.059 3.941
26 C 0.009 3.991
27 H 0.062 0.938
28 H 0.087 0.913
29 H 0.050 0.950
30 H 0.097 0.903
31 H 0.068 0.932
32 H 0.064 0.936
33 H 0.144 0.856
34 H 0.059 0.941
35 H 0.061 0.939
36 H 0.053 0.947
37 H 0.054 0.946
38 H 0.013 0.987
39 H 0.011 0.989
40 H 0.263 0.737
41 H 0.077 0.923
42 H 0.056 0.944
43 H 0.074 0.926
44 H 0.080 0.920
45 H 0.049 0.951
46 H 0.072 0.928
47 H 0.059 0.941
48 H 0.109 0.891
49 H 0.059 0.941
50 H 0.118 0.882
51 H 0.110 0.890
52 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -21.687 -1.335 5.491 22.411
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.003 3.997
3 C -0.202 4.202
4 C 0.313 3.687
5 O -0.466 6.466
6 N -0.321 5.321
7 C -0.019 4.019
8 C -0.153 4.153
9 C -0.088 4.088
10 C -0.044 4.044
11 C -0.551 4.551
12 H 0.060 0.940
13 C -0.190 4.190
14 N -0.593 5.593
15 Si 0.765 3.235
16 H -0.195 1.195
17 H -0.214 1.214
18 H -0.175 1.175
19 C -0.158 4.158
20 C -0.010 4.010
21 N -0.245 5.245
22 C -0.113 4.113
23 C -0.009 4.009
24 O -0.319 6.319
25 C -0.017 4.017
26 C -0.118 4.118
27 H 0.081 0.919
28 H 0.106 0.894
29 H 0.069 0.931
30 H 0.115 0.885
31 H 0.087 0.913
32 H 0.083 0.917
33 H 0.161 0.839
34 H 0.077 0.923
35 H 0.080 0.920
36 H 0.071 0.929
37 H 0.072 0.928
38 H 0.031 0.969
39 H 0.029 0.971
40 H 0.072 0.928
41 H 0.096 0.904
42 H 0.074 0.926
43 H 0.092 0.908
44 H 0.099 0.901
45 H 0.067 0.933
46 H 0.090 0.910
47 H 0.077 0.923
48 H 0.127 0.873
49 H 0.078 0.922
50 H 0.136 0.864
51 H 0.128 0.872
52 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges -21.493 -1.493 5.191 22.161
hybrid contribution 0.314 0.348 -1.048 1.148
sum -21.179 -1.145 4.143 21.611
Atomic orbital electron populations
1.22171 0.93510 1.02477 1.03478 1.21248 0.95018 0.95771 0.87671
1.22027 1.02468 0.91626 1.04065 1.20755 0.81592 0.77838 0.88562
1.90652 1.56428 1.57374 1.42139 1.48171 1.08869 1.58763 1.16303
1.22400 0.89557 1.01112 0.88789 1.21759 0.96701 0.98555 0.98288
1.20921 0.93949 0.98769 0.95149 1.19578 0.93789 0.95542 0.95480
1.21434 0.98944 1.33260 1.01429 0.94000 1.25888 0.96127 0.97104
0.99909 1.70062 1.07233 1.46336 1.35628 0.85807 0.77175 0.79495
0.81050 1.19518 1.21381 1.17508 1.21914 0.95094 1.00402 0.98418
1.21596 0.95755 0.96458 0.87193 1.62743 1.57600 1.02377 1.01732
1.22815 0.99361 0.89111 0.99971 1.22666 0.99049 0.96349 0.82807
1.87966 1.78832 1.23737 1.41388 1.22849 1.00010 0.80763 0.98089
1.23059 0.99435 1.00415 0.88865 0.91861 0.89429 0.93052 0.88478
0.91307 0.91745 0.83900 0.92250 0.92000 0.92873 0.92751 0.96908
0.97064 0.92791 0.90433 0.92568 0.90804 0.90125 0.93317 0.90993
0.92254 0.87336 0.92217 0.86396 0.87158 0.92572
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.92 7.16 71.98 0.52 -2.41 16
2 C 0.10 1.91 0.29 2.78 0.00 1.91 16
3 C -0.14 -2.54 7.97 71.98 0.57 -1.97 16
4 C 0.52 14.24 5.04 87.65 0.44 14.68 16
5 O -0.59 -19.65 15.41 -3.04 -0.05 -19.70 16
6 N -0.59 -15.89 2.69 -819.75 -2.21 -18.10 16
7 C 0.10 2.71 4.64 86.22 0.40 3.11 16
8 C -0.11 -3.82 5.12 30.53 0.16 -3.66 16
9 C -0.07 -2.52 2.10 -10.77 -0.02 -2.55 16
10 C -0.01 -0.29 3.52 29.85 0.10 -0.19 16
11 C -0.51 -28.28 8.94 25.60 0.23 -28.05 16
12 H 0.04 2.51 7.30 -2.91 -0.02 2.49 16
13 C 0.01 0.35 5.47 84.65 0.46 0.81 16
14 N -0.95 -58.63 13.96 21.45 0.30 -58.33 16
15 Si 0.94 44.04 27.47 68.60 1.88 45.92 16
16 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16
17 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16
18 H -0.25 -11.06 6.54 99.48 0.65 -10.41 16
19 C -0.12 -3.65 5.36 30.67 0.16 -3.49 16
20 C 0.11 3.11 6.43 86.36 0.56 3.66 16
21 N -0.52 -9.15 1.55 -849.93 -1.32 -10.47 16
22 C 0.02 0.29 4.65 86.31 0.40 0.69 16
23 C 0.07 1.19 7.01 72.01 0.50 1.69 16
24 O -0.40 -7.59 10.83 -148.98 -1.61 -9.20 16
25 C 0.06 0.85 7.01 72.02 0.50 1.35 16
26 C 0.01 0.12 4.87 86.31 0.42 0.54 16
27 H 0.06 1.31 7.95 -2.39 -0.02 1.29 16
28 H 0.09 1.20 6.46 -2.39 -0.02 1.18 16
29 H 0.05 1.06 6.54 -2.39 -0.02 1.05 16
30 H 0.10 1.17 6.35 -2.39 -0.02 1.16 16
31 H 0.07 1.38 6.04 -2.39 -0.01 1.37 16
32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16
33 H 0.14 3.31 3.53 -2.39 -0.01 3.30 16
34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16
35 H 0.06 2.38 6.91 -2.38 -0.02 2.36 16
36 H 0.05 1.76 7.84 -2.39 -0.02 1.74 16
37 H 0.05 2.07 8.14 -2.38 -0.02 2.05 16
38 H 0.01 0.58 7.20 -2.39 -0.02 0.56 16
39 H 0.01 0.50 7.57 -2.39 -0.02 0.48 16
40 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16
41 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16
42 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16
43 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16
44 H 0.08 2.31 7.02 -2.39 -0.02 2.29 16
45 H 0.05 0.93 6.52 -2.39 -0.02 0.92 16
46 H 0.07 1.57 6.62 -2.39 -0.02 1.56 16
47 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16
48 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16
49 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16
50 H 0.12 1.19 8.14 -2.38 -0.02 1.17 16
51 H 0.11 1.13 6.19 -2.39 -0.01 1.11 16
52 H 0.06 0.72 6.44 -2.39 -0.02 0.70 16
Total: -1.00 -68.16 374.46 3.26 -64.90
By element:
Atomic # 1 Polarization: 17.98 SS G_CDS: 0.84 Total: 18.82 kcal
Atomic # 6 Polarization: -19.27 SS G_CDS: 5.41 Total: -13.85 kcal
Atomic # 7 Polarization: -83.67 SS G_CDS: -3.22 Total: -86.89 kcal
Atomic # 8 Polarization: -27.24 SS G_CDS: -1.66 Total: -28.90 kcal
Atomic # 14 Polarization: 44.04 SS G_CDS: 1.88 Total: 45.92 kcal
Total: -68.16 3.26 -64.90 kcal
The number of atoms in the molecule is 52
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000582361865.mol2 52
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.507 kcal
(2) G-P(sol) polarization free energy of solvation -68.156 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.662 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.255 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.900 kcal
(6) G-S(sol) free energy of system = (1) + (5) -88.407 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.13 seconds