Wall clock time and date at job start Tue Mar 31 2020 14:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 109.47017 * 55.00082 * 3 2 1 5 5 N 1.46504 * 109.47349 * 295.00344 * 3 2 1 6 6 C 1.34776 * 120.00216 * 84.99451 * 5 3 2 7 7 O 1.21592 * 119.99825 * 0.02562 * 6 5 3 8 8 N 1.34771 * 120.00322 * 180.02562 * 6 5 3 9 9 C 1.47022 * 125.64732 * 359.68944 * 8 6 5 10 10 C 1.54336 * 107.26868 * 178.84997 * 9 8 6 11 11 C 1.55159 * 103.01784 * 338.14793 * 10 9 8 12 12 O 1.42898 * 110.99927 * 277.22680 * 11 10 9 13 13 C 1.50702 * 111.03704 * 153.39312 * 11 10 9 14 14 H 1.08000 * 119.99764 * 6.32724 * 13 11 10 15 15 C 1.37873 * 119.99978 * 186.32784 * 13 11 10 16 16 N 1.31514 * 120.00294 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 120.00093 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.46991 * 60.00187 * 17 15 13 19 19 H 1.48500 * 109.47341 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47119 * 300.00076 * 17 15 13 21 21 C 1.47423 * 125.65233 * 180.02562 * 8 6 5 22 22 C 1.52994 * 109.47404 * 175.00005 * 3 2 1 23 23 C 1.53001 * 109.47368 * 300.00470 * 22 3 2 24 24 C 1.53001 * 109.47242 * 180.02562 * 23 22 3 25 25 C 1.52997 * 109.47624 * 59.99472 * 24 23 22 26 26 C 1.53001 * 109.47049 * 300.00188 * 25 24 23 27 27 C 1.52997 * 109.47404 * 180.02562 * 22 3 2 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 33 33 H 0.97001 * 119.99585 * 265.00132 * 5 3 2 34 34 H 1.09002 * 109.88679 * 298.39749 * 9 8 6 35 35 H 1.09000 * 109.88014 * 59.56122 * 9 8 6 36 36 H 1.08995 * 110.85490 * 219.67636 * 10 9 8 37 37 H 1.09004 * 110.50994 * 96.45073 * 10 9 8 38 38 H 0.96703 * 113.99802 * 173.64973 * 12 11 10 39 39 H 0.96996 * 120.00491 * 180.02562 * 16 15 13 40 40 H 1.09002 * 110.36478 * 322.92675 * 21 8 6 41 41 H 1.09001 * 110.37033 * 85.13902 * 21 8 6 42 42 H 1.09008 * 109.46970 * 60.00049 * 22 3 2 43 43 H 1.09008 * 109.46711 * 299.99168 * 23 22 3 44 44 H 1.08996 * 109.47271 * 59.99107 * 23 22 3 45 45 H 1.09008 * 109.46876 * 299.99444 * 24 23 22 46 46 H 1.09000 * 109.46891 * 179.97438 * 24 23 22 47 47 H 1.08994 * 109.47445 * 180.02562 * 25 24 23 48 48 H 1.08996 * 109.47166 * 59.99711 * 25 24 23 49 49 H 1.08998 * 109.47252 * 299.99805 * 26 25 24 50 50 H 1.09004 * 109.47455 * 179.97438 * 26 25 24 51 51 H 1.09000 * 109.47325 * 300.00168 * 27 22 3 52 52 H 1.08995 * 109.47630 * 59.99990 * 27 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 7 1.6524 2.0975 -1.2518 6 6 0.4350 2.6644 -1.3669 7 8 -0.3414 2.6325 -0.4317 8 7 0.0782 3.2665 -2.5186 9 6 0.9172 3.3830 -3.7203 10 6 0.0847 4.1201 -4.7906 11 6 -1.3752 3.8860 -4.3203 12 8 -1.8552 2.6121 -4.7549 13 6 -2.2809 4.9924 -4.7964 14 1 -1.9025 5.7486 -5.4682 15 6 -3.5927 5.0392 -4.3744 16 7 -4.0537 4.1180 -3.5568 17 14 -4.7152 6.4109 -4.9640 18 1 -4.8162 6.3658 -6.4449 19 1 -6.0652 6.2353 -4.3707 20 1 -4.1568 7.7217 -4.5456 21 6 -1.2154 3.9237 -2.7798 22 6 3.5647 1.4444 0.1257 23 6 3.9696 0.7603 1.4330 24 6 5.4944 0.7628 1.5590 25 6 6.0039 2.2055 1.5592 26 6 5.5991 2.8895 0.2519 27 6 4.0747 2.8869 0.1264 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 2.2719 2.1232 -1.9978 34 1 1.8172 3.9532 -3.4903 35 1 1.1869 2.3906 -4.0817 36 1 0.2469 3.6843 -5.7764 37 1 0.3229 5.1838 -4.7940 38 1 -2.7259 2.3795 -4.4044 39 1 -4.9766 4.1507 -3.2601 40 1 -2.0245 3.3722 -2.3010 41 1 -1.1965 4.9536 -2.4236 42 1 3.9994 0.9054 -0.7162 43 1 3.5350 1.2994 2.2749 44 1 3.6063 -0.2673 1.4330 45 1 5.9294 0.2240 0.7171 46 1 5.7828 0.2758 2.4906 47 1 7.0902 2.2072 1.6485 48 1 5.5689 2.7442 2.4010 49 1 6.0340 2.3508 -0.5899 50 1 5.9616 3.9175 0.2522 51 1 3.7863 3.3747 -0.8048 52 1 3.6401 3.4256 0.9683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591941251.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:21 Heat of formation + Delta-G solvation = -108.994830 kcal Electronic energy + Delta-G solvation = -29578.481399 eV Core-core repulsion = 25769.474962 eV Total energy + Delta-G solvation = -3809.006437 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.12361 -38.84440 -37.35574 -35.27199 -34.18061 -32.19927 -32.13835 -30.93222 -30.74104 -29.76488 -27.72600 -25.88586 -24.70793 -23.10965 -22.42153 -21.95126 -20.46337 -20.11463 -19.59936 -19.22450 -17.47481 -16.97067 -16.13279 -15.60106 -15.31928 -15.03790 -14.56286 -14.38938 -14.29457 -14.25415 -13.98226 -13.85140 -13.07823 -12.91611 -12.85093 -12.79198 -12.46674 -12.31489 -12.18780 -11.97076 -11.63240 -11.43644 -11.36811 -11.29722 -11.25041 -11.01425 -10.97552 -10.78831 -10.61871 -10.56118 -10.52321 -10.46674 -10.23514 -10.16330 -10.11282 -9.46791 -9.31251 -8.66633 -8.60973 -8.31819 -7.61908 -6.24350 -4.34236 3.20053 3.25492 3.29847 3.31849 3.84616 4.28066 4.39609 4.47086 4.54864 4.63852 4.89690 5.02497 5.05178 5.10241 5.23003 5.28891 5.33217 5.34084 5.44654 5.45104 5.50257 5.58100 5.68132 5.72032 5.78388 5.82148 5.87459 5.95662 5.96284 5.97278 6.01769 6.05325 6.13497 6.16867 6.21298 6.24660 6.32535 6.45368 6.54470 6.74044 6.80714 6.92716 6.95028 7.04422 7.28286 7.37156 7.73741 7.77610 8.07267 8.62172 8.70894 9.24854 9.33329 9.41425 10.82506 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.022331 B = 0.002956 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.553319 B = 9469.047468 C = 9967.261864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.134 4.134 3 C 0.169 3.831 4 H 0.085 0.915 5 N -0.745 5.745 6 C 0.717 3.283 7 O -0.592 6.592 8 N -0.630 5.630 9 C 0.106 3.894 10 C -0.116 4.116 11 C 0.249 3.751 12 O -0.583 6.583 13 C -0.538 4.538 14 H 0.065 0.935 15 C 0.072 3.928 16 N -0.891 5.891 17 Si 0.903 3.097 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.275 1.275 21 C 0.115 3.885 22 C -0.092 4.092 23 C -0.113 4.113 24 C -0.118 4.118 25 C -0.120 4.120 26 C -0.119 4.119 27 C -0.113 4.113 28 H 0.038 0.962 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.390 0.610 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.076 0.924 38 H 0.381 0.619 39 H 0.270 0.730 40 H 0.084 0.916 41 H 0.055 0.945 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.060 0.940 46 H 0.060 0.940 47 H 0.058 0.942 48 H 0.061 0.939 49 H 0.060 0.940 50 H 0.060 0.940 51 H 0.064 0.936 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.246 -5.947 7.471 20.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C 0.064 3.936 4 H 0.103 0.897 5 N -0.401 5.401 6 C 0.419 3.581 7 O -0.471 6.471 8 N -0.367 5.367 9 C -0.017 4.017 10 C -0.154 4.154 11 C 0.208 3.792 12 O -0.391 6.391 13 C -0.577 4.577 14 H 0.083 0.917 15 C -0.132 4.132 16 N -0.530 5.530 17 Si 0.730 3.270 18 H -0.200 1.200 19 H -0.211 1.211 20 H -0.201 1.201 21 C -0.007 4.007 22 C -0.111 4.111 23 C -0.151 4.151 24 C -0.155 4.155 25 C -0.158 4.158 26 C -0.156 4.156 27 C -0.151 4.151 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.223 0.777 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.230 0.770 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.079 0.921 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.080 0.920 49 H 0.079 0.921 50 H 0.078 0.922 51 H 0.083 0.917 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 18.071 -6.054 8.024 20.679 hybrid contribution -0.867 0.766 -0.368 1.214 sum 17.204 -5.288 7.656 19.559 Atomic orbital electron populations 1.21775 0.94579 0.99935 1.03760 1.22034 0.97423 0.96383 1.01445 1.20820 0.92829 0.92845 0.87156 0.89682 1.45181 1.16258 1.61967 1.16658 1.15479 0.81851 0.78275 0.82477 1.90890 1.51989 1.65661 1.38524 1.47939 1.18949 1.58423 1.11349 1.21896 0.93677 0.99431 0.86732 1.22584 0.96057 0.99556 0.97176 1.19622 0.89066 0.82993 0.87517 1.86101 1.39773 1.37835 1.75408 1.21414 0.95612 1.10931 1.29727 0.91672 1.25072 0.98134 0.96108 0.93880 1.69710 1.16720 1.34010 1.32528 0.86477 0.79457 0.81960 0.79083 1.20044 1.21109 1.20052 1.23082 0.82089 0.95717 0.99767 1.21419 0.94320 0.96750 0.98642 1.21611 0.95630 1.00805 0.97076 1.21522 0.95741 0.96702 1.01567 1.21546 1.00117 0.96077 0.98046 1.21529 0.96111 1.00346 0.97652 1.21548 0.95026 0.96059 1.02438 0.94285 0.92384 0.91738 0.91481 0.92387 0.77671 0.93328 0.92837 0.90895 0.90541 0.76965 0.91979 0.89721 0.92705 0.90917 0.91693 0.91339 0.92079 0.92128 0.92367 0.92048 0.92125 0.92167 0.91745 0.91876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.51 37.16 0.32 -1.95 16 2 C -0.13 -1.67 5.39 -26.73 -0.14 -1.82 16 3 C 0.17 2.15 1.84 -67.93 -0.12 2.03 16 4 H 0.09 1.28 7.58 -51.92 -0.39 0.89 16 5 N -0.74 -10.97 4.30 -58.68 -0.25 -11.23 16 6 C 0.72 14.18 7.06 -86.92 -0.61 13.57 16 7 O -0.59 -13.73 13.73 5.28 0.07 -13.66 16 8 N -0.63 -12.92 3.33 -176.22 -0.59 -13.51 16 9 C 0.11 1.84 6.15 -3.06 -0.02 1.82 16 10 C -0.12 -2.28 6.13 -24.89 -0.15 -2.43 16 11 C 0.25 5.99 0.87 -89.61 -0.08 5.92 16 12 O -0.58 -14.84 13.16 -35.23 -0.46 -15.30 16 13 C -0.54 -14.01 8.27 -34.44 -0.28 -14.29 16 14 H 0.07 1.66 7.79 -52.49 -0.41 1.25 16 15 C 0.07 1.87 5.29 -17.82 -0.09 1.78 16 16 N -0.89 -23.91 10.69 55.43 0.59 -23.32 16 17 Si 0.90 20.43 29.54 -169.99 -5.02 15.41 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 C 0.12 2.79 5.38 -2.52 -0.01 2.78 16 22 C -0.09 -0.88 1.83 -90.62 -0.17 -1.04 16 23 C -0.11 -0.94 4.86 -26.73 -0.13 -1.07 16 24 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16 25 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 26 C -0.12 -0.96 5.92 -26.75 -0.16 -1.12 16 27 C -0.11 -1.10 5.04 -26.75 -0.13 -1.23 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.98 7.84 -51.93 -0.41 0.57 16 30 H 0.06 1.25 5.64 -51.93 -0.29 0.95 16 31 H 0.07 0.70 6.17 -51.93 -0.32 0.38 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.39 4.98 7.37 -40.82 -0.30 4.67 16 34 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 37 H 0.08 1.42 8.03 -51.93 -0.42 1.01 16 38 H 0.38 10.00 7.56 45.56 0.34 10.34 16 39 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 40 H 0.08 2.32 7.33 -51.93 -0.38 1.94 16 41 H 0.05 1.38 8.03 -51.93 -0.42 0.97 16 42 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 43 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 44 H 0.07 0.54 6.32 -51.93 -0.33 0.21 16 45 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 51 H 0.06 0.68 7.45 -51.93 -0.39 0.29 16 52 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 389.88 15.07 5.88 5.88 Total: -1.00 -28.85 389.88 -10.66 -39.50 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -8.76 Total: 15.35 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: -2.11 Total: 0.88 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: -0.25 Total: -48.06 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.39 Total: -28.96 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -28.85 -10.66 -39.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591941251.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.491 kcal (2) G-P(sol) polarization free energy of solvation -28.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds