Wall clock time and date at job start Tue Mar 31 2020 14:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 H 1.09008 * 109.47017 * 55.00082 * 3 2 1 5 5 N 1.46504 * 109.47349 * 295.00344 * 3 2 1 6 6 C 1.34776 * 120.00216 * 84.99451 * 5 3 2 7 7 O 1.21592 * 119.99825 * 0.02562 * 6 5 3 8 8 N 1.34771 * 120.00322 * 180.02562 * 6 5 3 9 9 C 1.47022 * 125.64732 * 359.68944 * 8 6 5 10 10 C 1.54336 * 107.26868 * 178.84997 * 9 8 6 11 11 C 1.55159 * 103.01784 * 338.14793 * 10 9 8 12 12 O 1.42898 * 110.99927 * 277.22680 * 11 10 9 13 13 C 1.50702 * 111.03704 * 153.39312 * 11 10 9 14 14 H 1.08000 * 119.99764 * 6.32724 * 13 11 10 15 15 C 1.37873 * 119.99978 * 186.32784 * 13 11 10 16 16 N 1.31514 * 120.00294 * 359.97438 * 15 13 11 17 17 Si 1.86798 * 120.00093 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.46991 * 60.00187 * 17 15 13 19 19 H 1.48500 * 109.47341 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47119 * 300.00076 * 17 15 13 21 21 C 1.47423 * 125.65233 * 180.02562 * 8 6 5 22 22 C 1.52994 * 109.47404 * 175.00005 * 3 2 1 23 23 C 1.53001 * 109.47368 * 300.00470 * 22 3 2 24 24 C 1.53001 * 109.47242 * 180.02562 * 23 22 3 25 25 C 1.52997 * 109.47624 * 59.99472 * 24 23 22 26 26 C 1.53001 * 109.47049 * 300.00188 * 25 24 23 27 27 C 1.52997 * 109.47404 * 180.02562 * 22 3 2 28 28 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 30 30 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 33 33 H 0.97001 * 119.99585 * 265.00132 * 5 3 2 34 34 H 1.09002 * 109.88679 * 298.39749 * 9 8 6 35 35 H 1.09000 * 109.88014 * 59.56122 * 9 8 6 36 36 H 1.08995 * 110.85490 * 219.67636 * 10 9 8 37 37 H 1.09004 * 110.50994 * 96.45073 * 10 9 8 38 38 H 0.96703 * 113.99802 * 173.64973 * 12 11 10 39 39 H 0.96996 * 120.00491 * 180.02562 * 16 15 13 40 40 H 1.09002 * 110.36478 * 322.92675 * 21 8 6 41 41 H 1.09001 * 110.37033 * 85.13902 * 21 8 6 42 42 H 1.09008 * 109.46970 * 60.00049 * 22 3 2 43 43 H 1.09008 * 109.46711 * 299.99168 * 23 22 3 44 44 H 1.08996 * 109.47271 * 59.99107 * 23 22 3 45 45 H 1.09008 * 109.46876 * 299.99444 * 24 23 22 46 46 H 1.09000 * 109.46891 * 179.97438 * 24 23 22 47 47 H 1.08994 * 109.47445 * 180.02562 * 25 24 23 48 48 H 1.08996 * 109.47166 * 59.99711 * 25 24 23 49 49 H 1.08998 * 109.47252 * 299.99805 * 26 25 24 50 50 H 1.09004 * 109.47455 * 179.97438 * 26 25 24 51 51 H 1.09000 * 109.47325 * 300.00168 * 27 22 3 52 52 H 1.08995 * 109.47630 * 59.99990 * 27 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8419 5 7 1.6524 2.0975 -1.2518 6 6 0.4350 2.6644 -1.3669 7 8 -0.3414 2.6325 -0.4317 8 7 0.0782 3.2665 -2.5186 9 6 0.9172 3.3830 -3.7203 10 6 0.0847 4.1201 -4.7906 11 6 -1.3752 3.8860 -4.3203 12 8 -1.8552 2.6121 -4.7549 13 6 -2.2809 4.9924 -4.7964 14 1 -1.9025 5.7486 -5.4682 15 6 -3.5927 5.0392 -4.3744 16 7 -4.0537 4.1180 -3.5568 17 14 -4.7152 6.4109 -4.9640 18 1 -4.8162 6.3658 -6.4449 19 1 -6.0652 6.2353 -4.3707 20 1 -4.1568 7.7217 -4.5456 21 6 -1.2154 3.9237 -2.7798 22 6 3.5647 1.4444 0.1257 23 6 3.9696 0.7603 1.4330 24 6 5.4944 0.7628 1.5590 25 6 6.0039 2.2055 1.5592 26 6 5.5991 2.8895 0.2519 27 6 4.0747 2.8869 0.1264 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8934 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 2.2719 2.1232 -1.9978 34 1 1.8172 3.9532 -3.4903 35 1 1.1869 2.3906 -4.0817 36 1 0.2469 3.6843 -5.7764 37 1 0.3229 5.1838 -4.7940 38 1 -2.7259 2.3795 -4.4044 39 1 -4.9766 4.1507 -3.2601 40 1 -2.0245 3.3722 -2.3010 41 1 -1.1965 4.9536 -2.4236 42 1 3.9994 0.9054 -0.7162 43 1 3.5350 1.2994 2.2749 44 1 3.6063 -0.2673 1.4330 45 1 5.9294 0.2240 0.7171 46 1 5.7828 0.2758 2.4906 47 1 7.0902 2.2072 1.6485 48 1 5.5689 2.7442 2.4010 49 1 6.0340 2.3508 -0.5899 50 1 5.9616 3.9175 0.2522 51 1 3.7863 3.3747 -0.8048 52 1 3.6401 3.4256 0.9683 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591941251.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:20 Heat of formation + Delta-G solvation = -127.126147 kcal Electronic energy + Delta-G solvation = -29579.267632 eV Core-core repulsion = 25769.474962 eV Total energy + Delta-G solvation = -3809.792670 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.48149 -39.99378 -38.87970 -36.46168 -35.97822 -34.22340 -33.44496 -31.87475 -31.54071 -31.24355 -29.49710 -27.31613 -26.26347 -24.32523 -23.55717 -22.76116 -21.60907 -21.33875 -21.11947 -20.38948 -19.19479 -18.70278 -17.46617 -17.01933 -16.82066 -16.41599 -16.15680 -15.78584 -15.40991 -15.09003 -14.99087 -14.89473 -14.74301 -14.60086 -14.20329 -13.83221 -13.67228 -13.51195 -13.45911 -13.24031 -13.08148 -12.97854 -12.81059 -12.51958 -12.42169 -12.32321 -12.26242 -12.21727 -12.07429 -11.95981 -11.76884 -11.71085 -11.28643 -11.21886 -11.10861 -10.93025 -10.84796 -10.64870 -10.29524 -9.95288 -9.26308 -8.23375 -6.40874 1.43311 1.43528 1.51951 1.77402 2.28346 2.38725 3.02454 3.15905 3.56985 3.81270 3.84061 3.88405 4.10190 4.13349 4.20482 4.23378 4.29508 4.36467 4.38752 4.45221 4.57352 4.63581 4.64305 4.68349 4.69573 4.76929 4.79185 4.84402 4.97330 5.04025 5.07854 5.08365 5.12386 5.17918 5.23945 5.30260 5.32008 5.33752 5.34868 5.42132 5.44678 5.48099 5.48691 5.51674 5.63123 5.74357 5.76878 6.07600 6.27245 6.66286 7.16759 7.28805 7.35842 7.71108 8.81338 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.022331 B = 0.002956 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.553319 B = 9469.047468 C = 9967.261864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C 0.168 3.832 4 H 0.057 0.943 5 N -0.723 5.723 6 C 0.712 3.288 7 O -0.634 6.634 8 N -0.637 5.637 9 C 0.109 3.891 10 C -0.110 4.110 11 C 0.232 3.768 12 O -0.587 6.587 13 C -0.557 4.557 14 H 0.068 0.932 15 C 0.025 3.975 16 N -0.915 5.915 17 Si 0.963 3.037 18 H -0.269 1.269 19 H -0.287 1.287 20 H -0.270 1.270 21 C 0.132 3.868 22 C -0.080 4.080 23 C -0.113 4.113 24 C -0.114 4.114 25 C -0.121 4.121 26 C -0.115 4.115 27 C -0.113 4.113 28 H 0.053 0.947 29 H 0.036 0.964 30 H 0.024 0.976 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.404 0.596 34 H 0.087 0.913 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.372 0.628 39 H 0.268 0.732 40 H 0.041 0.959 41 H 0.034 0.966 42 H 0.090 0.910 43 H 0.055 0.945 44 H 0.077 0.923 45 H 0.070 0.930 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.053 0.947 49 H 0.070 0.930 50 H 0.060 0.940 51 H 0.056 0.944 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.322 -6.511 6.828 23.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.165 4.165 3 C 0.063 3.937 4 H 0.075 0.925 5 N -0.379 5.379 6 C 0.414 3.586 7 O -0.516 6.516 8 N -0.374 5.374 9 C -0.013 4.013 10 C -0.148 4.148 11 C 0.192 3.808 12 O -0.394 6.394 13 C -0.595 4.595 14 H 0.087 0.913 15 C -0.176 4.176 16 N -0.554 5.554 17 Si 0.789 3.211 18 H -0.194 1.194 19 H -0.212 1.212 20 H -0.195 1.195 21 C 0.009 3.991 22 C -0.099 4.099 23 C -0.151 4.151 24 C -0.151 4.151 25 C -0.159 4.159 26 C -0.152 4.152 27 C -0.151 4.151 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.240 0.760 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.220 0.780 39 H 0.077 0.923 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.108 0.892 43 H 0.074 0.926 44 H 0.096 0.904 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.072 0.928 49 H 0.089 0.911 50 H 0.079 0.921 51 H 0.075 0.925 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 21.223 -6.631 7.359 23.421 hybrid contribution -1.836 0.928 -0.125 2.061 sum 19.387 -5.703 7.234 21.464 Atomic orbital electron populations 1.21692 0.97356 0.99850 1.00716 1.22015 0.94656 0.96408 1.03463 1.20979 0.95152 0.92436 0.85115 0.92502 1.45023 1.14442 1.60575 1.17879 1.15683 0.82888 0.78316 0.81687 1.90860 1.53652 1.67098 1.39989 1.47875 1.18205 1.58554 1.12718 1.22064 0.93816 1.00794 0.84658 1.22583 0.93015 1.00795 0.98413 1.19856 0.91488 0.81978 0.87470 1.86091 1.39206 1.38684 1.75441 1.21773 0.96329 1.11601 1.29786 0.91337 1.25837 0.99617 0.98136 0.93967 1.69846 1.16738 1.35437 1.33382 0.85526 0.77469 0.79426 0.78714 1.19389 1.21231 1.19481 1.22561 0.82861 0.94030 0.99694 1.21353 0.91313 0.97096 1.00136 1.21620 0.96718 1.00903 0.95815 1.21505 0.94516 0.96636 1.02488 1.21559 1.00832 0.96127 0.97345 1.21500 0.94514 1.00759 0.98449 1.21534 0.96432 0.95843 1.01275 0.92807 0.94514 0.95688 0.88713 0.90922 0.75984 0.89474 0.91128 0.89734 0.89452 0.77996 0.92265 0.94015 0.94774 0.89183 0.92636 0.90421 0.91165 0.91193 0.91199 0.92802 0.91091 0.92113 0.92538 0.93626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.46 8.51 71.98 0.61 -3.85 16 2 C -0.13 -2.96 5.39 30.59 0.16 -2.79 16 3 C 0.17 4.11 1.84 44.99 0.08 4.20 16 4 H 0.06 1.75 7.58 -2.38 -0.02 1.73 16 5 N -0.72 -20.64 4.30 -457.81 -1.97 -22.61 16 6 C 0.71 28.72 7.06 179.06 1.26 29.99 16 7 O -0.63 -31.03 13.73 -4.01 -0.06 -31.09 16 8 N -0.64 -26.34 3.33 -829.71 -2.76 -29.10 16 9 C 0.11 3.54 6.15 86.73 0.53 4.08 16 10 C -0.11 -4.17 6.13 31.79 0.19 -3.98 16 11 C 0.23 11.36 0.87 -10.14 -0.01 11.35 16 12 O -0.59 -30.52 13.16 -148.98 -1.96 -32.48 16 13 C -0.56 -29.27 8.27 25.60 0.21 -29.06 16 14 H 0.07 3.47 7.79 -2.91 -0.02 3.44 16 15 C 0.03 1.35 5.29 84.65 0.45 1.80 16 16 N -0.92 -50.98 10.69 21.45 0.23 -50.75 16 17 Si 0.96 42.33 29.54 68.60 2.03 44.36 16 18 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 19 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 21 C 0.13 6.67 5.38 86.86 0.47 7.13 16 22 C -0.08 -1.33 1.83 -10.80 -0.02 -1.35 16 23 C -0.11 -1.58 4.86 30.60 0.15 -1.43 16 24 C -0.11 -1.28 5.92 30.59 0.18 -1.10 16 25 C -0.12 -1.48 5.92 30.59 0.18 -1.30 16 26 C -0.11 -1.56 5.92 30.58 0.18 -1.37 16 27 C -0.11 -2.00 5.04 30.58 0.15 -1.85 16 28 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.04 1.30 7.84 -2.39 -0.02 1.28 16 30 H 0.02 0.98 5.64 -2.39 -0.01 0.97 16 31 H 0.09 1.72 6.17 -2.39 -0.01 1.71 16 32 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.40 9.29 7.37 -92.71 -0.68 8.61 16 34 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 37 H 0.09 3.09 8.03 -2.39 -0.02 3.07 16 38 H 0.37 20.43 7.56 -74.06 -0.56 19.87 16 39 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 40 H 0.04 2.43 7.33 -2.39 -0.02 2.41 16 41 H 0.03 1.81 8.03 -2.39 -0.02 1.79 16 42 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 43 H 0.05 0.90 8.14 -2.38 -0.02 0.88 16 44 H 0.08 0.96 6.32 -2.39 -0.02 0.95 16 45 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 46 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 48 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 49 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.06 0.82 8.14 -2.39 -0.02 0.81 16 51 H 0.06 1.08 7.45 -2.39 -0.02 1.06 16 52 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -66.40 389.88 -0.03 -66.44 By element: Atomic # 1 Polarization: 45.11 SS G_CDS: -0.34 Total: 44.77 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: 4.80 Total: 10.47 kcal Atomic # 7 Polarization: -97.96 SS G_CDS: -4.50 Total: -102.46 kcal Atomic # 8 Polarization: -61.55 SS G_CDS: -2.02 Total: -63.57 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -66.40 -0.03 -66.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591941251.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.690 kcal (2) G-P(sol) polarization free energy of solvation -66.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds