Wall clock time and date at job start Tue Mar 31 2020 14:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47350 * 2 1 4 4 H 1.09000 * 109.47474 * 54.99465 * 3 2 1 5 5 C 1.53004 * 109.46587 * 295.00117 * 3 2 1 6 6 C 1.53001 * 109.46932 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47408 * 59.99743 * 6 5 3 8 8 C 1.53002 * 109.46928 * 299.99974 * 7 6 5 9 9 C 1.52997 * 109.47457 * 175.00041 * 3 2 1 10 10 H 1.09003 * 109.47147 * 299.99565 * 9 3 2 11 11 C 1.53004 * 109.47193 * 59.99748 * 9 3 2 12 12 N 1.46496 * 109.46696 * 184.99974 * 11 9 3 13 13 C 1.34780 * 119.99693 * 179.97438 * 12 11 9 14 14 O 1.21588 * 119.99974 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00189 * 179.97438 * 13 12 11 16 16 C 1.47014 * 125.64849 * 359.96261 * 15 13 12 17 17 C 1.54320 * 107.27380 * 181.09352 * 16 15 13 18 18 C 1.55152 * 102.94118 * 22.18831 * 17 16 15 19 19 O 1.42903 * 111.00434 * 82.57714 * 18 17 16 20 20 C 1.50704 * 111.04128 * 206.40570 * 18 17 16 21 21 H 1.08003 * 119.99340 * 356.80762 * 20 18 17 22 22 C 1.37871 * 120.00138 * 176.79441 * 20 18 17 23 23 N 1.31511 * 120.00128 * 0.02562 * 22 20 18 24 24 Si 1.86801 * 119.99837 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47040 * 60.00367 * 24 22 20 26 26 H 1.48498 * 109.47230 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47197 * 300.00419 * 24 22 20 28 28 C 1.47430 * 125.64838 * 179.97438 * 15 13 12 29 29 H 1.08998 * 109.46933 * 60.00232 * 1 2 3 30 30 H 1.09000 * 109.46883 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46841 * 300.00126 * 1 2 3 32 32 H 1.08997 * 109.47501 * 239.99582 * 2 1 3 33 33 H 1.09001 * 109.47423 * 119.99841 * 2 1 3 34 34 H 1.09000 * 109.47425 * 60.00028 * 5 3 2 35 35 H 1.09004 * 109.47343 * 299.99540 * 5 3 2 36 36 H 1.09000 * 109.47177 * 299.99378 * 6 5 3 37 37 H 1.09007 * 109.47388 * 179.97438 * 6 5 3 38 38 H 1.09000 * 109.46975 * 180.02562 * 7 6 5 39 39 H 1.08996 * 109.47384 * 60.00171 * 7 6 5 40 40 H 1.09000 * 109.46915 * 299.99910 * 8 7 6 41 41 H 1.09001 * 109.46789 * 180.02562 * 8 7 6 42 42 H 1.08998 * 109.46868 * 64.99844 * 11 9 3 43 43 H 1.08993 * 109.46795 * 304.99986 * 11 9 3 44 44 H 0.96996 * 120.00918 * 359.97438 * 12 11 9 45 45 H 1.09000 * 109.88210 * 300.50877 * 16 15 13 46 46 H 1.09007 * 109.88418 * 61.51817 * 16 15 13 47 47 H 1.09007 * 110.72261 * 263.83054 * 17 16 15 48 48 H 1.09000 * 110.72226 * 140.55729 * 17 16 15 49 49 H 0.96700 * 114.00311 * 186.35133 * 19 18 17 50 50 H 0.97002 * 119.99909 * 179.97438 * 23 22 20 51 51 H 1.08997 * 110.36336 * 36.99910 * 28 15 13 52 52 H 1.08996 * 110.36616 * 274.67811 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 2.1458 3.5688 -1.3078 7 6 3.6706 3.5701 -1.1824 8 6 4.0753 2.8861 0.1251 9 6 3.5648 1.4444 0.1257 10 1 3.8532 0.9571 1.0571 11 6 4.1749 0.6877 -1.0559 12 7 5.6251 0.5861 -0.8743 13 6 6.3773 -0.0447 -1.7978 14 8 5.8523 -0.5291 -2.7818 15 7 7.7114 -0.1377 -1.6311 16 6 8.4726 0.4019 -0.4950 17 6 9.9610 0.0813 -0.7471 18 6 10.0170 -0.1231 -2.2841 19 8 10.1164 1.1297 -2.9642 20 6 11.1545 -1.0342 -2.6676 21 1 11.8287 -1.4047 -1.9096 22 6 11.3343 -1.3949 -3.9861 23 7 10.5135 -0.9436 -4.9092 24 14 12.7439 -2.5248 -4.4614 25 1 12.6002 -3.8211 -3.7512 26 1 12.7188 -2.7578 -5.9277 27 1 14.0336 -1.8934 -4.0830 28 6 8.6492 -0.7972 -2.5580 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 0.5489 2.1252 -1.3970 35 1 2.0699 1.5874 -2.1493 36 1 1.7115 4.1082 -0.4660 37 1 1.8578 4.0560 -2.2394 38 1 4.0342 4.5976 -1.1822 39 1 4.1049 3.0308 -2.0241 40 1 3.6411 3.4255 0.9668 41 1 5.1617 2.8875 0.2146 42 1 3.9611 1.2242 -1.9803 43 1 3.7444 -0.3123 -1.1083 44 1 6.0440 0.9728 -0.0896 45 1 8.3312 1.4809 -0.4331 46 1 8.1412 -0.0690 0.4305 47 1 10.2528 -0.8305 -0.2259 48 1 10.5920 0.9176 -0.4460 49 1 10.0567 1.0605 -3.9269 50 1 10.6403 -1.1971 -5.8369 51 1 8.3433 -0.6289 -3.5906 52 1 8.7033 -1.8652 -2.3468 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592028020.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:30 Heat of formation + Delta-G solvation = -109.494656 kcal Electronic energy + Delta-G solvation = -29227.468496 eV Core-core repulsion = 25418.440385 eV Total energy + Delta-G solvation = -3809.028111 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.22763 -39.17202 -37.24471 -34.42608 -34.16544 -33.94945 -32.16179 -31.08919 -29.89419 -29.27998 -27.78337 -26.07361 -24.53146 -24.09655 -22.50823 -22.22170 -20.87306 -19.63706 -19.44080 -18.80505 -17.37636 -16.96983 -16.14106 -15.76118 -15.23937 -15.04826 -14.85058 -14.69754 -14.37187 -14.18176 -13.95424 -13.51825 -13.49382 -13.06741 -12.96232 -12.78590 -12.76725 -12.63900 -12.03555 -11.90354 -11.81995 -11.61405 -11.58640 -11.42163 -11.27600 -11.16473 -11.00106 -10.81918 -10.75891 -10.57958 -10.45810 -10.29806 -10.16549 -10.12253 -10.07199 -9.55556 -9.35256 -8.69522 -8.64568 -8.31802 -7.62857 -6.24738 -4.34107 3.20524 3.25876 3.29986 3.32061 3.82650 4.28181 4.40582 4.43206 4.49139 4.61748 4.89240 4.94416 5.02313 5.03905 5.08875 5.15695 5.24493 5.29098 5.38709 5.44386 5.48019 5.54670 5.59690 5.67408 5.69317 5.75943 5.79899 5.82199 5.85828 5.94488 5.96031 6.01877 6.05108 6.09923 6.12022 6.16659 6.20143 6.26411 6.39778 6.53854 6.73491 6.87914 6.91251 7.01869 7.26329 7.35907 7.70663 7.77678 8.06744 8.59983 8.70094 9.21111 9.34448 9.44441 10.82653 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.023331 B = 0.002704 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.828777 B =10353.494289 C =10623.370140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.126 4.126 3 C -0.074 4.074 4 H 0.072 0.928 5 C -0.121 4.121 6 C -0.117 4.117 7 C -0.125 4.125 8 C -0.113 4.113 9 C -0.095 4.095 10 H 0.074 0.926 11 C 0.140 3.860 12 N -0.750 5.750 13 C 0.715 3.285 14 O -0.599 6.599 15 N -0.629 5.629 16 C 0.107 3.893 17 C -0.116 4.116 18 C 0.249 3.751 19 O -0.583 6.583 20 C -0.538 4.538 21 H 0.066 0.934 22 C 0.071 3.929 23 N -0.893 5.893 24 Si 0.904 3.096 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.275 1.275 28 C 0.113 3.887 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.058 0.942 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.391 0.609 45 H 0.054 0.946 46 H 0.049 0.951 47 H 0.077 0.923 48 H 0.073 0.927 49 H 0.383 0.617 50 H 0.271 0.729 51 H 0.082 0.918 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.494 6.693 11.731 21.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.093 4.093 4 H 0.091 0.909 5 C -0.159 4.159 6 C -0.155 4.155 7 C -0.162 4.162 8 C -0.150 4.150 9 C -0.114 4.114 10 H 0.093 0.907 11 C 0.016 3.984 12 N -0.407 5.407 13 C 0.417 3.583 14 O -0.478 6.478 15 N -0.366 5.366 16 C -0.017 4.017 17 C -0.154 4.154 18 C 0.208 3.792 19 O -0.392 6.392 20 C -0.576 4.576 21 H 0.084 0.916 22 C -0.132 4.132 23 N -0.531 5.531 24 Si 0.731 3.269 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.200 1.200 28 C -0.009 4.009 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.081 0.919 44 H 0.225 0.775 45 H 0.072 0.928 46 H 0.067 0.933 47 H 0.095 0.905 48 H 0.092 0.908 49 H 0.233 0.767 50 H 0.081 0.919 51 H 0.101 0.899 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.950 6.543 11.383 21.440 hybrid contribution 0.871 -0.671 -0.459 1.192 sum -16.078 5.873 10.924 20.306 Atomic orbital electron populations 1.21811 0.95987 1.01472 1.01693 1.21680 0.95798 0.96399 1.02511 1.21101 0.93839 0.96030 0.98375 0.90948 1.21714 1.00568 0.95811 0.97758 1.21517 0.95835 0.96679 1.01449 1.21590 0.95810 1.00477 0.98339 1.21531 1.00688 0.94903 0.97928 1.21398 0.95314 0.96138 0.98510 0.90720 1.21338 0.79001 1.00005 0.98051 1.45143 1.07423 1.62452 1.25701 1.15535 0.80427 0.79456 0.82872 1.90878 1.71664 1.54349 1.30883 1.47910 1.04107 1.59122 1.25417 1.21901 0.93741 0.97499 0.88572 1.22587 0.92768 1.01567 0.98473 1.19617 0.90368 0.82332 0.86845 1.86084 1.96322 1.32000 1.24792 1.21426 1.13066 1.29584 0.93538 0.91623 1.25072 0.96182 0.95538 0.96405 1.69654 1.36837 1.44762 1.01881 0.86463 0.82176 0.80835 0.77407 1.20046 1.21102 1.20034 1.23133 0.88749 0.95624 0.93439 0.92482 0.92938 0.93011 0.91311 0.91970 0.91818 0.91366 0.92296 0.92178 0.92165 0.91251 0.91956 0.91860 0.91345 0.91906 0.77546 0.92789 0.93288 0.90488 0.90824 0.76681 0.91931 0.89933 0.92572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.67 37.16 0.36 -0.76 16 2 C -0.13 -1.06 4.91 -26.73 -0.13 -1.20 16 3 C -0.07 -0.61 1.96 -90.62 -0.18 -0.79 16 4 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 5 C -0.12 -1.04 4.69 -26.73 -0.13 -1.16 16 6 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 7 C -0.12 -1.22 5.65 -26.73 -0.15 -1.37 16 8 C -0.11 -1.03 5.32 -26.76 -0.14 -1.17 16 9 C -0.09 -0.89 2.23 -90.65 -0.20 -1.09 16 10 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 11 C 0.14 1.83 4.14 -4.04 -0.02 1.81 16 12 N -0.75 -11.44 5.24 -65.23 -0.34 -11.78 16 13 C 0.72 14.81 8.49 -86.92 -0.74 14.07 16 14 O -0.60 -14.80 16.60 5.29 0.09 -14.71 16 15 N -0.63 -13.21 3.33 -176.23 -0.59 -13.79 16 16 C 0.11 1.86 6.15 -3.07 -0.02 1.85 16 17 C -0.12 -2.29 6.13 -24.90 -0.15 -2.45 16 18 C 0.25 6.06 0.87 -89.62 -0.08 5.98 16 19 O -0.58 -15.00 13.15 -35.23 -0.46 -15.47 16 20 C -0.54 -14.04 8.26 -34.44 -0.28 -14.32 16 21 H 0.07 1.67 7.78 -52.48 -0.41 1.26 16 22 C 0.07 1.87 5.30 -17.82 -0.09 1.78 16 23 N -0.89 -24.07 10.72 55.43 0.59 -23.47 16 24 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 26 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 28 C 0.11 2.76 5.50 -2.52 -0.01 2.74 16 29 H 0.06 0.41 6.56 -51.93 -0.34 0.07 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.67 6.60 -51.93 -0.34 0.33 16 33 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.49 6.56 -51.93 -0.34 0.15 16 35 H 0.07 0.69 6.54 -51.93 -0.34 0.35 16 36 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.50 8.14 -51.92 -0.42 0.08 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.07 0.83 6.32 -51.93 -0.33 0.50 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.61 7.18 -51.93 -0.37 0.24 16 42 H 0.07 0.99 4.82 -51.93 -0.25 0.73 16 43 H 0.06 0.88 6.29 -51.93 -0.33 0.55 16 44 H 0.39 5.06 6.64 -40.82 -0.27 4.78 16 45 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 47 H 0.08 1.43 8.03 -51.93 -0.42 1.02 16 48 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 49 H 0.38 10.19 7.32 45.56 0.33 10.52 16 50 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 51 H 0.08 2.29 7.47 -51.93 -0.39 1.90 16 52 H 0.06 1.42 8.03 -51.93 -0.42 1.00 16 LS Contribution 387.23 15.07 5.84 5.84 Total: -1.00 -29.88 387.23 -10.44 -40.32 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -8.42 Total: 14.85 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -2.13 Total: 2.77 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: -0.33 Total: -49.05 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -0.38 Total: -30.18 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.88 -10.44 -40.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592028020.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.179 kcal (2) G-P(sol) polarization free energy of solvation -29.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds