Wall clock time and date at job start Tue Mar 31 2020 14:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47350 * 2 1 4 4 H 1.09000 * 109.47474 * 54.99465 * 3 2 1 5 5 C 1.53004 * 109.46587 * 295.00117 * 3 2 1 6 6 C 1.53001 * 109.46932 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47408 * 59.99743 * 6 5 3 8 8 C 1.53002 * 109.46928 * 299.99974 * 7 6 5 9 9 C 1.52997 * 109.47457 * 175.00041 * 3 2 1 10 10 H 1.09003 * 109.47147 * 299.99565 * 9 3 2 11 11 C 1.53004 * 109.47193 * 59.99748 * 9 3 2 12 12 N 1.46496 * 109.46696 * 184.99974 * 11 9 3 13 13 C 1.34780 * 119.99693 * 179.97438 * 12 11 9 14 14 O 1.21588 * 119.99974 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00189 * 179.97438 * 13 12 11 16 16 C 1.47014 * 125.64849 * 359.96261 * 15 13 12 17 17 C 1.54320 * 107.27380 * 181.09352 * 16 15 13 18 18 C 1.55152 * 102.94118 * 22.18831 * 17 16 15 19 19 O 1.42903 * 111.00434 * 82.57714 * 18 17 16 20 20 C 1.50704 * 111.04128 * 206.40570 * 18 17 16 21 21 H 1.08003 * 119.99340 * 356.80762 * 20 18 17 22 22 C 1.37871 * 120.00138 * 176.79441 * 20 18 17 23 23 N 1.31511 * 120.00128 * 0.02562 * 22 20 18 24 24 Si 1.86801 * 119.99837 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47040 * 60.00367 * 24 22 20 26 26 H 1.48498 * 109.47230 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47197 * 300.00419 * 24 22 20 28 28 C 1.47430 * 125.64838 * 179.97438 * 15 13 12 29 29 H 1.08998 * 109.46933 * 60.00232 * 1 2 3 30 30 H 1.09000 * 109.46883 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46841 * 300.00126 * 1 2 3 32 32 H 1.08997 * 109.47501 * 239.99582 * 2 1 3 33 33 H 1.09001 * 109.47423 * 119.99841 * 2 1 3 34 34 H 1.09000 * 109.47425 * 60.00028 * 5 3 2 35 35 H 1.09004 * 109.47343 * 299.99540 * 5 3 2 36 36 H 1.09000 * 109.47177 * 299.99378 * 6 5 3 37 37 H 1.09007 * 109.47388 * 179.97438 * 6 5 3 38 38 H 1.09000 * 109.46975 * 180.02562 * 7 6 5 39 39 H 1.08996 * 109.47384 * 60.00171 * 7 6 5 40 40 H 1.09000 * 109.46915 * 299.99910 * 8 7 6 41 41 H 1.09001 * 109.46789 * 180.02562 * 8 7 6 42 42 H 1.08998 * 109.46868 * 64.99844 * 11 9 3 43 43 H 1.08993 * 109.46795 * 304.99986 * 11 9 3 44 44 H 0.96996 * 120.00918 * 359.97438 * 12 11 9 45 45 H 1.09000 * 109.88210 * 300.50877 * 16 15 13 46 46 H 1.09007 * 109.88418 * 61.51817 * 16 15 13 47 47 H 1.09007 * 110.72261 * 263.83054 * 17 16 15 48 48 H 1.09000 * 110.72226 * 140.55729 * 17 16 15 49 49 H 0.96700 * 114.00311 * 186.35133 * 19 18 17 50 50 H 0.97002 * 119.99909 * 179.97438 * 23 22 20 51 51 H 1.08997 * 110.36336 * 36.99910 * 28 15 13 52 52 H 1.08996 * 110.36616 * 274.67811 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6352 2.1265 -1.3074 6 6 2.1458 3.5688 -1.3078 7 6 3.6706 3.5701 -1.1824 8 6 4.0753 2.8861 0.1251 9 6 3.5648 1.4444 0.1257 10 1 3.8532 0.9571 1.0571 11 6 4.1749 0.6877 -1.0559 12 7 5.6251 0.5861 -0.8743 13 6 6.3773 -0.0447 -1.7978 14 8 5.8523 -0.5291 -2.7818 15 7 7.7114 -0.1377 -1.6311 16 6 8.4726 0.4019 -0.4950 17 6 9.9610 0.0813 -0.7471 18 6 10.0170 -0.1231 -2.2841 19 8 10.1164 1.1297 -2.9642 20 6 11.1545 -1.0342 -2.6676 21 1 11.8287 -1.4047 -1.9096 22 6 11.3343 -1.3949 -3.9861 23 7 10.5135 -0.9436 -4.9092 24 14 12.7439 -2.5248 -4.4614 25 1 12.6002 -3.8211 -3.7512 26 1 12.7188 -2.7578 -5.9277 27 1 14.0336 -1.8934 -4.0830 28 6 8.6492 -0.7972 -2.5580 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 0.5489 2.1252 -1.3970 35 1 2.0699 1.5874 -2.1493 36 1 1.7115 4.1082 -0.4660 37 1 1.8578 4.0560 -2.2394 38 1 4.0342 4.5976 -1.1822 39 1 4.1049 3.0308 -2.0241 40 1 3.6411 3.4255 0.9668 41 1 5.1617 2.8875 0.2146 42 1 3.9611 1.2242 -1.9803 43 1 3.7444 -0.3123 -1.1083 44 1 6.0440 0.9728 -0.0896 45 1 8.3312 1.4809 -0.4331 46 1 8.1412 -0.0690 0.4305 47 1 10.2528 -0.8305 -0.2259 48 1 10.5920 0.9176 -0.4460 49 1 10.0567 1.0605 -3.9269 50 1 10.6403 -1.1971 -5.8369 51 1 8.3433 -0.6289 -3.5906 52 1 8.7033 -1.8652 -2.3468 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592028020.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:28 Heat of formation + Delta-G solvation = -128.747280 kcal Electronic energy + Delta-G solvation = -29228.303352 eV Core-core repulsion = 25418.440385 eV Total energy + Delta-G solvation = -3809.862968 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.45324 -40.42766 -38.96684 -36.03547 -35.59861 -34.76553 -34.19142 -32.26212 -31.34020 -29.99791 -29.54184 -27.52288 -26.12635 -24.79345 -24.05795 -23.02227 -21.59482 -21.46842 -20.92204 -19.85652 -19.11528 -18.60819 -17.31191 -17.08848 -16.91246 -16.40052 -16.24780 -16.01373 -15.60690 -15.22171 -14.97720 -14.91714 -14.69092 -14.56400 -14.18754 -13.89198 -13.80413 -13.69103 -13.47988 -13.40064 -13.27991 -12.81248 -12.71996 -12.51955 -12.50327 -12.31445 -12.27597 -12.26445 -12.08634 -12.04782 -11.87557 -11.53531 -11.33708 -11.20247 -11.06733 -10.84585 -10.76840 -10.64311 -10.31998 -10.10066 -9.29679 -8.23990 -6.40974 1.43810 1.44063 1.52574 1.72441 2.17698 2.38905 3.02078 3.13000 3.64367 3.73875 3.78943 3.81747 4.09614 4.15456 4.19081 4.20539 4.32300 4.34488 4.35338 4.43657 4.54481 4.56723 4.62292 4.64423 4.76399 4.77208 4.80784 4.84186 4.90137 5.03214 5.06351 5.09676 5.13384 5.15035 5.21465 5.25576 5.31300 5.34148 5.35533 5.38497 5.40361 5.46485 5.46561 5.56614 5.59754 5.65849 5.76843 6.06065 6.20832 6.66024 7.09271 7.29724 7.36723 7.60114 8.81444 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.023331 B = 0.002704 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.828777 B =10353.494289 C =10623.370140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C -0.068 4.068 4 H 0.094 0.906 5 C -0.121 4.121 6 C -0.114 4.114 7 C -0.127 4.127 8 C -0.111 4.111 9 C -0.085 4.085 10 H 0.091 0.909 11 C 0.140 3.860 12 N -0.726 5.726 13 C 0.708 3.292 14 O -0.648 6.648 15 N -0.634 5.634 16 C 0.108 3.892 17 C -0.110 4.110 18 C 0.232 3.768 19 O -0.588 6.588 20 C -0.556 4.556 21 H 0.070 0.930 22 C 0.024 3.976 23 N -0.917 5.917 24 Si 0.965 3.035 25 H -0.270 1.270 26 H -0.287 1.287 27 H -0.268 1.268 28 C 0.127 3.873 29 H 0.056 0.944 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.046 0.954 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.043 0.957 36 H 0.077 0.923 37 H 0.057 0.943 38 H 0.064 0.936 39 H 0.037 0.963 40 H 0.086 0.914 41 H 0.058 0.942 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.407 0.593 45 H 0.072 0.928 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.085 0.915 49 H 0.373 0.627 50 H 0.269 0.731 51 H 0.039 0.961 52 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.029 7.549 14.898 23.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.087 4.087 4 H 0.112 0.888 5 C -0.158 4.158 6 C -0.151 4.151 7 C -0.164 4.164 8 C -0.148 4.148 9 C -0.103 4.103 10 H 0.109 0.891 11 C 0.017 3.983 12 N -0.383 5.383 13 C 0.410 3.590 14 O -0.531 6.531 15 N -0.370 5.370 16 C -0.014 4.014 17 C -0.148 4.148 18 C 0.192 3.808 19 O -0.396 6.396 20 C -0.594 4.594 21 H 0.089 0.911 22 C -0.177 4.177 23 N -0.557 5.557 24 Si 0.790 3.210 25 H -0.195 1.195 26 H -0.212 1.212 27 H -0.193 1.193 28 C 0.003 3.997 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.094 0.906 35 H 0.062 0.938 36 H 0.096 0.904 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.056 0.944 40 H 0.105 0.895 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.243 0.757 45 H 0.090 0.910 46 H 0.108 0.892 47 H 0.108 0.892 48 H 0.104 0.896 49 H 0.223 0.777 50 H 0.078 0.922 51 H 0.057 0.943 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -17.490 7.436 14.627 23.982 hybrid contribution 1.000 -0.924 -1.470 2.003 sum -16.490 6.511 13.157 22.078 Atomic orbital electron populations 1.21792 0.94987 1.01681 1.02282 1.21667 0.96705 0.96391 1.01659 1.21091 0.92826 0.96033 0.98751 0.88773 1.21704 1.01162 0.95754 0.97208 1.21498 0.94829 0.96627 1.02155 1.21585 0.96736 1.00351 0.97734 1.21542 1.00558 0.94538 0.98161 1.21381 0.95915 0.95980 0.97054 0.89125 1.21473 0.77561 0.99848 0.99434 1.44969 1.07951 1.60617 1.24747 1.15797 0.80488 0.79623 0.83137 1.90838 1.72607 1.56465 1.33199 1.47851 1.04176 1.59145 1.25864 1.22103 0.91854 0.98871 0.88586 1.22592 0.94675 1.02805 0.94709 1.19868 0.89522 0.81683 0.89727 1.86074 1.96344 1.32983 1.24170 1.21790 1.13703 1.29986 0.93895 0.91144 1.25856 0.98374 0.96893 0.96533 1.69786 1.38179 1.45752 1.01943 0.85498 0.79462 0.79152 0.76853 1.19455 1.21249 1.19336 1.22671 0.90063 0.95035 0.91926 0.92535 0.93021 0.91710 0.93499 0.91514 0.90630 0.93820 0.90416 0.92434 0.91716 0.94379 0.89547 0.92320 0.93119 0.93056 0.75663 0.91022 0.89181 0.89212 0.89600 0.77745 0.92188 0.94287 0.94258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.67 71.98 0.70 -1.23 16 2 C -0.13 -1.96 4.91 30.59 0.15 -1.81 16 3 C -0.07 -0.97 1.96 -10.79 -0.02 -0.99 16 4 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 5 C -0.12 -1.94 4.69 30.60 0.14 -1.80 16 6 C -0.11 -1.73 5.92 30.59 0.18 -1.55 16 7 C -0.13 -2.33 5.65 30.59 0.17 -2.16 16 8 C -0.11 -1.72 5.32 30.58 0.16 -1.55 16 9 C -0.08 -1.40 2.23 -10.81 -0.02 -1.43 16 10 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 11 C 0.14 3.65 4.14 86.38 0.36 4.01 16 12 N -0.73 -21.58 5.24 -478.54 -2.51 -24.09 16 13 C 0.71 29.76 8.49 179.05 1.52 31.28 16 14 O -0.65 -33.62 16.60 -3.99 -0.07 -33.69 16 15 N -0.63 -26.63 3.33 -829.74 -2.76 -29.39 16 16 C 0.11 3.50 6.15 86.73 0.53 4.04 16 17 C -0.11 -4.14 6.13 31.78 0.19 -3.94 16 18 C 0.23 11.38 0.87 -10.14 -0.01 11.37 16 19 O -0.59 -30.79 13.15 -148.98 -1.96 -32.75 16 20 C -0.56 -29.14 8.26 25.60 0.21 -28.93 16 21 H 0.07 3.54 7.78 -2.91 -0.02 3.51 16 22 C 0.02 1.28 5.30 84.65 0.45 1.73 16 23 N -0.92 -51.17 10.72 21.44 0.23 -50.94 16 24 Si 0.97 42.26 29.54 68.60 2.03 44.29 16 25 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 26 H -0.29 -12.52 7.11 99.48 0.71 -11.81 16 27 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 28 C 0.13 6.43 5.50 86.86 0.48 6.90 16 29 H 0.06 0.72 6.56 -2.39 -0.02 0.71 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.05 0.93 6.60 -2.39 -0.02 0.91 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.08 1.03 6.56 -2.39 -0.02 1.02 16 35 H 0.04 0.91 6.54 -2.39 -0.02 0.90 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.04 0.93 6.32 -2.39 -0.02 0.92 16 40 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.06 0.97 7.18 -2.39 -0.02 0.96 16 42 H 0.05 1.53 4.82 -2.39 -0.01 1.52 16 43 H 0.05 1.47 6.29 -2.39 -0.02 1.46 16 44 H 0.41 9.51 6.64 -92.71 -0.62 8.89 16 45 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.09 2.25 8.14 -2.38 -0.02 2.23 16 47 H 0.09 3.12 8.03 -2.38 -0.02 3.10 16 48 H 0.09 3.01 8.14 -2.39 -0.02 3.00 16 49 H 0.37 20.74 7.32 -74.06 -0.54 20.20 16 50 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 51 H 0.04 2.28 7.47 -2.39 -0.02 2.27 16 52 H 0.04 2.07 8.03 -2.39 -0.02 2.05 16 Total: -1.00 -68.01 387.23 -0.08 -68.09 By element: Atomic # 1 Polarization: 44.77 SS G_CDS: -0.24 Total: 44.53 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 5.20 Total: 13.95 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -5.04 Total: -104.42 kcal Atomic # 8 Polarization: -64.41 SS G_CDS: -2.03 Total: -66.44 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -68.01 -0.08 -68.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592028020.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.658 kcal (2) G-P(sol) polarization free energy of solvation -68.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds