Wall clock time and date at job start Tue Mar 31 2020 14:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46957 * 2 1 4 4 H 1.08992 * 109.47165 * 305.00368 * 3 2 1 5 5 N 1.46495 * 109.46896 * 65.00522 * 3 2 1 6 6 C 1.34783 * 119.99966 * 274.99398 * 5 3 2 7 7 O 1.21590 * 119.99686 * 4.39794 * 6 5 3 8 8 N 1.34771 * 119.99965 * 184.39084 * 6 5 3 9 9 C 1.46922 * 120.63514 * 354.94382 * 8 6 5 10 10 C 1.53193 * 108.77822 * 126.40834 * 9 8 6 11 11 C 1.53046 * 109.30825 * 54.63859 * 10 9 8 12 12 C 1.53037 * 109.53901 * 298.63715 * 11 10 9 13 13 H 1.09002 * 109.49490 * 301.41247 * 12 11 10 14 14 C 1.50698 * 109.49931 * 181.31983 * 12 11 10 15 15 H 1.08002 * 119.99944 * 0.15841 * 14 12 11 16 16 C 1.37876 * 120.00206 * 180.16053 * 14 12 11 17 17 N 1.31511 * 119.99728 * 359.97438 * 16 14 12 18 18 Si 1.86801 * 120.00023 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47049 * 59.99855 * 18 16 14 20 20 H 1.48502 * 109.46950 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46876 * 299.99628 * 18 16 14 22 22 C 1.46924 * 120.63037 * 174.96842 * 8 6 5 23 23 C 1.53001 * 109.46750 * 185.00175 * 3 2 1 24 24 C 1.53177 * 109.54404 * 299.82100 * 23 3 2 25 25 C 1.53113 * 109.15610 * 183.24323 * 24 23 3 26 26 O 1.42897 * 109.48256 * 57.47580 * 25 24 23 27 27 C 1.42899 * 114.10135 * 298.88389 * 26 25 24 28 28 C 1.53095 * 109.41099 * 61.16555 * 27 26 25 29 29 H 1.08998 * 109.46883 * 299.99407 * 1 2 3 30 30 H 1.08998 * 109.47490 * 59.99879 * 1 2 3 31 31 H 1.09005 * 109.46926 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47258 * 240.00369 * 2 1 3 33 33 H 1.08998 * 109.47490 * 120.00121 * 2 1 3 34 34 H 0.97008 * 120.00311 * 94.99678 * 5 3 2 35 35 H 1.09003 * 109.59145 * 246.20013 * 9 8 6 36 36 H 1.09000 * 109.58492 * 6.62824 * 9 8 6 37 37 H 1.09002 * 109.49898 * 174.58623 * 10 9 8 38 38 H 1.08994 * 109.50114 * 294.69161 * 10 9 8 39 39 H 1.09001 * 109.45801 * 58.65275 * 11 10 9 40 40 H 1.08994 * 109.45878 * 178.61453 * 11 10 9 41 41 H 0.97005 * 119.99758 * 180.02562 * 17 16 14 42 42 H 1.09007 * 109.58692 * 353.36966 * 22 8 6 43 43 H 1.09000 * 109.59312 * 113.79800 * 22 8 6 44 44 H 1.08997 * 109.54360 * 60.00697 * 23 3 2 45 45 H 1.08994 * 109.52709 * 303.06050 * 24 23 3 46 46 H 1.09004 * 109.52012 * 63.25038 * 24 23 3 47 47 H 1.09002 * 109.40012 * 297.49750 * 25 24 23 48 48 H 1.08997 * 109.49188 * 177.51398 * 25 24 23 49 49 H 1.08996 * 109.48690 * 301.17899 * 27 26 25 50 50 H 1.09007 * 109.48868 * 181.14711 * 27 26 25 51 51 H 1.09003 * 109.52327 * 182.48282 * 28 27 26 52 52 H 1.09000 * 109.57702 * 62.32468 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8417 5 7 1.6525 2.0974 1.2518 6 6 0.4352 2.6644 1.3671 7 8 -0.3706 2.5633 0.4621 8 7 0.1111 3.3432 2.4853 9 6 1.0301 3.3810 3.6310 10 6 1.2829 4.8431 4.0123 11 6 -0.0568 5.5409 4.2580 12 6 -0.8910 5.5135 2.9753 13 1 -0.3425 6.0087 2.1740 14 6 -2.1965 6.2291 3.2088 15 1 -2.4093 6.6628 4.1748 16 6 -3.1193 6.3302 2.1894 17 7 -2.8600 5.8025 1.0131 18 14 -4.7379 7.2167 2.4792 19 1 -4.4687 8.6264 2.8606 20 1 -5.5487 7.1859 1.2355 21 1 -5.4831 6.5417 3.5721 22 6 -1.1683 4.0590 2.5822 23 6 3.5648 1.4443 -0.1258 24 6 4.1776 0.6910 1.0589 25 6 5.7041 0.7675 0.9676 26 8 6.1121 2.1368 0.9449 27 6 5.6078 2.8776 -0.1682 28 6 4.0776 2.8877 -0.1214 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.2720 2.1230 1.9979 35 1 0.5839 2.8552 4.4751 36 1 1.9728 2.9062 3.3590 37 1 1.8859 4.8834 4.9195 38 1 1.8109 5.3445 3.2013 39 1 -0.5952 5.0239 5.0523 40 1 0.1211 6.5748 4.5534 41 1 -3.5091 5.8739 0.2958 42 1 -1.6763 4.0316 1.6181 43 1 -1.7939 3.5885 3.3407 44 1 3.8544 0.9573 -1.0569 45 1 3.8464 1.1474 1.9915 46 1 3.8614 -0.3518 1.0302 47 1 6.0374 0.2736 0.0549 48 1 6.1454 0.2709 1.8317 49 1 5.9400 2.4114 -1.0958 50 1 5.9796 3.9012 -0.1224 51 1 3.6900 3.4146 -0.9934 52 1 3.7433 3.3903 0.7862 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596444331.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:53 Heat of formation + Delta-G solvation = -89.297219 kcal Electronic energy + Delta-G solvation = -30079.239892 eV Core-core repulsion = 26271.087608 eV Total energy + Delta-G solvation = -3808.152285 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.41272 -39.23539 -37.29358 -35.90545 -33.49339 -32.66344 -32.13033 -31.38841 -31.09960 -29.64997 -27.19338 -25.03107 -24.33322 -23.98541 -23.30584 -21.78565 -21.05140 -20.51079 -19.37886 -18.80182 -17.49410 -16.53517 -16.21630 -16.10186 -15.82066 -15.22614 -14.92693 -14.55790 -14.42924 -14.12153 -14.01882 -13.67612 -13.62836 -13.42293 -13.14339 -12.66698 -12.57904 -12.49332 -12.20274 -11.95335 -11.85232 -11.59560 -11.52808 -11.33986 -11.02961 -10.95004 -10.89035 -10.79523 -10.50094 -10.46367 -10.36498 -10.30888 -10.18432 -9.83756 -9.67325 -9.31534 -9.06573 -8.91397 -8.55059 -8.38536 -7.57637 -5.95722 -4.04522 3.28570 3.35656 3.40101 3.41485 3.67529 3.92591 4.39431 4.43443 4.48948 4.51654 4.61052 4.78765 4.97909 5.10430 5.23484 5.27625 5.31588 5.33611 5.34405 5.39925 5.46878 5.50296 5.53498 5.63693 5.66044 5.74147 5.79609 5.89813 5.97884 6.02022 6.13192 6.16594 6.19212 6.21205 6.34540 6.42305 6.62979 6.70462 6.81470 6.85187 6.96610 6.98570 7.02874 7.11499 7.39609 7.56651 7.78912 7.97132 8.10470 8.44561 8.66972 8.98681 9.34896 9.60802 11.09227 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.016959 B = 0.003511 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.687673 B = 7972.649931 C = 8696.497922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.131 4.131 3 C 0.171 3.829 4 H 0.087 0.913 5 N -0.749 5.749 6 C 0.701 3.299 7 O -0.578 6.578 8 N -0.624 5.624 9 C 0.116 3.884 10 C -0.133 4.133 11 C -0.109 4.109 12 C 0.040 3.960 13 H 0.027 0.973 14 C -0.522 4.522 15 H 0.057 0.943 16 C 0.064 3.936 17 N -0.879 5.879 18 Si 0.891 3.109 19 H -0.278 1.278 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.131 3.869 23 C -0.096 4.096 24 C -0.152 4.152 25 C 0.061 3.939 26 O -0.384 6.384 27 C 0.062 3.938 28 C -0.151 4.151 29 H 0.066 0.934 30 H 0.059 0.941 31 H 0.035 0.965 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.388 0.612 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.049 0.951 40 H 0.050 0.950 41 H 0.263 0.737 42 H 0.123 0.877 43 H 0.037 0.963 44 H 0.082 0.918 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.048 0.952 48 H 0.092 0.908 49 H 0.048 0.952 50 H 0.093 0.907 51 H 0.076 0.924 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.041 -11.586 -0.472 20.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C 0.065 3.935 4 H 0.105 0.895 5 N -0.409 5.409 6 C 0.402 3.598 7 O -0.455 6.455 8 N -0.360 5.360 9 C -0.008 4.008 10 C -0.171 4.171 11 C -0.147 4.147 12 C 0.021 3.979 13 H 0.046 0.954 14 C -0.561 4.561 15 H 0.075 0.925 16 C -0.139 4.139 17 N -0.516 5.516 18 Si 0.719 3.281 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C 0.010 3.990 23 C -0.115 4.115 24 C -0.190 4.190 25 C -0.016 4.016 26 O -0.303 6.303 27 C -0.015 4.015 28 C -0.189 4.189 29 H 0.085 0.915 30 H 0.078 0.922 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.225 0.775 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.073 0.927 42 H 0.141 0.859 43 H 0.055 0.945 44 H 0.101 0.899 45 H 0.088 0.912 46 H 0.097 0.903 47 H 0.067 0.933 48 H 0.110 0.890 49 H 0.066 0.934 50 H 0.111 0.889 51 H 0.094 0.906 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 16.448 -11.579 -1.202 20.151 hybrid contribution -0.777 0.369 0.350 0.929 sum 15.670 -11.210 -0.852 19.286 Atomic orbital electron populations 1.21808 0.94405 0.99621 1.04160 1.21987 0.97580 0.96256 1.01180 1.20745 0.92131 0.92991 0.87657 0.89492 1.45462 1.16525 1.62383 1.16571 1.15911 0.81959 0.78643 0.83251 1.90923 1.49524 1.64965 1.40078 1.47781 1.21717 1.53313 1.13220 1.21467 0.92384 0.97313 0.89640 1.21941 0.99273 0.95523 1.00375 1.21610 0.94040 0.98689 1.00375 1.18975 0.94783 0.92182 0.91963 0.95447 1.21041 1.01473 1.35746 0.97814 0.92505 1.25040 0.98388 0.95369 0.95139 1.69884 1.35491 1.43959 1.02283 0.86673 0.83739 0.80196 0.77467 1.20334 1.21283 1.20276 1.22143 0.80517 0.91584 1.04739 1.21512 0.94724 0.96225 0.99021 1.22301 0.96127 1.01458 0.99138 1.22570 0.94012 0.83250 1.01733 1.87936 1.72872 1.22160 1.47300 1.22596 0.93358 0.96681 0.88876 1.22237 0.95894 0.96754 1.04021 0.91538 0.92176 0.94585 0.92006 0.92268 0.77462 0.92300 0.92370 0.92438 0.92235 0.93262 0.93149 0.92661 0.85937 0.94510 0.89920 0.91169 0.90304 0.93328 0.89019 0.93358 0.88887 0.90554 0.90503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.46 37.16 0.31 -1.85 16 2 C -0.13 -1.55 5.11 -26.73 -0.14 -1.68 16 3 C 0.17 2.15 2.01 -67.93 -0.14 2.01 16 4 H 0.09 1.33 7.64 -51.93 -0.40 0.93 16 5 N -0.75 -10.84 4.13 -58.68 -0.24 -11.08 16 6 C 0.70 13.80 7.03 -86.92 -0.61 13.19 16 7 O -0.58 -13.67 12.58 5.29 0.07 -13.60 16 8 N -0.62 -12.46 2.97 -178.50 -0.53 -12.99 16 9 C 0.12 1.82 6.43 -3.71 -0.02 1.80 16 10 C -0.13 -2.15 6.08 -26.61 -0.16 -2.31 16 11 C -0.11 -2.19 5.11 -26.69 -0.14 -2.33 16 12 C 0.04 1.00 2.25 -91.65 -0.21 0.79 16 13 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 14 C -0.52 -14.22 8.56 -34.44 -0.29 -14.52 16 15 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.77 5.30 -17.82 -0.09 1.67 16 17 N -0.88 -25.73 11.39 55.43 0.63 -25.10 16 18 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 22 C 0.13 3.19 5.39 -3.71 -0.02 3.17 16 23 C -0.10 -0.91 2.13 -90.43 -0.19 -1.10 16 24 C -0.15 -1.27 4.85 -26.58 -0.13 -1.39 16 25 C 0.06 0.49 6.84 37.22 0.25 0.75 16 26 O -0.38 -4.02 10.77 -35.23 -0.38 -4.40 16 27 C 0.06 0.56 6.84 37.21 0.25 0.82 16 28 C -0.15 -1.54 5.31 -26.59 -0.14 -1.69 16 29 H 0.07 1.21 5.54 -51.93 -0.29 0.92 16 30 H 0.06 1.01 7.80 -51.93 -0.40 0.61 16 31 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.64 6.79 -51.93 -0.35 0.29 16 34 H 0.39 4.87 4.06 -40.82 -0.17 4.71 16 35 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.06 0.74 5.56 -51.93 -0.29 0.45 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 42 H 0.12 3.50 5.15 -51.93 -0.27 3.23 16 43 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.64 6.41 -51.93 -0.33 0.30 16 46 H 0.08 0.58 6.74 -51.93 -0.35 0.23 16 47 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 49 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.09 0.79 8.14 -51.92 -0.42 0.36 16 51 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 52 H 0.08 0.92 7.36 -51.93 -0.38 0.53 16 LS Contribution 381.65 15.07 5.75 5.75 Total: -1.00 -31.16 381.65 -10.30 -41.46 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -9.11 Total: 6.27 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -1.46 Total: -2.68 kcal Atomic # 7 Polarization: -49.03 SS G_CDS: -0.14 Total: -49.17 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.31 Total: -18.00 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.16 -10.30 -41.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596444331.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.837 kcal (2) G-P(sol) polarization free energy of solvation -31.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds