Wall clock time and date at job start Tue Mar 31 2020 14:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46957 * 2 1 4 4 H 1.08992 * 109.47165 * 305.00368 * 3 2 1 5 5 N 1.46495 * 109.46896 * 65.00522 * 3 2 1 6 6 C 1.34783 * 119.99966 * 274.99398 * 5 3 2 7 7 O 1.21590 * 119.99686 * 4.39794 * 6 5 3 8 8 N 1.34771 * 119.99965 * 184.39084 * 6 5 3 9 9 C 1.46922 * 120.63514 * 354.94382 * 8 6 5 10 10 C 1.53193 * 108.77822 * 126.40834 * 9 8 6 11 11 C 1.53046 * 109.30825 * 54.63859 * 10 9 8 12 12 C 1.53037 * 109.53901 * 298.63715 * 11 10 9 13 13 H 1.09002 * 109.49490 * 301.41247 * 12 11 10 14 14 C 1.50698 * 109.49931 * 181.31983 * 12 11 10 15 15 H 1.08002 * 119.99944 * 0.15841 * 14 12 11 16 16 C 1.37876 * 120.00206 * 180.16053 * 14 12 11 17 17 N 1.31511 * 119.99728 * 359.97438 * 16 14 12 18 18 Si 1.86801 * 120.00023 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.47049 * 59.99855 * 18 16 14 20 20 H 1.48502 * 109.46950 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.46876 * 299.99628 * 18 16 14 22 22 C 1.46924 * 120.63037 * 174.96842 * 8 6 5 23 23 C 1.53001 * 109.46750 * 185.00175 * 3 2 1 24 24 C 1.53177 * 109.54404 * 299.82100 * 23 3 2 25 25 C 1.53113 * 109.15610 * 183.24323 * 24 23 3 26 26 O 1.42897 * 109.48256 * 57.47580 * 25 24 23 27 27 C 1.42899 * 114.10135 * 298.88389 * 26 25 24 28 28 C 1.53095 * 109.41099 * 61.16555 * 27 26 25 29 29 H 1.08998 * 109.46883 * 299.99407 * 1 2 3 30 30 H 1.08998 * 109.47490 * 59.99879 * 1 2 3 31 31 H 1.09005 * 109.46926 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47258 * 240.00369 * 2 1 3 33 33 H 1.08998 * 109.47490 * 120.00121 * 2 1 3 34 34 H 0.97008 * 120.00311 * 94.99678 * 5 3 2 35 35 H 1.09003 * 109.59145 * 246.20013 * 9 8 6 36 36 H 1.09000 * 109.58492 * 6.62824 * 9 8 6 37 37 H 1.09002 * 109.49898 * 174.58623 * 10 9 8 38 38 H 1.08994 * 109.50114 * 294.69161 * 10 9 8 39 39 H 1.09001 * 109.45801 * 58.65275 * 11 10 9 40 40 H 1.08994 * 109.45878 * 178.61453 * 11 10 9 41 41 H 0.97005 * 119.99758 * 180.02562 * 17 16 14 42 42 H 1.09007 * 109.58692 * 353.36966 * 22 8 6 43 43 H 1.09000 * 109.59312 * 113.79800 * 22 8 6 44 44 H 1.08997 * 109.54360 * 60.00697 * 23 3 2 45 45 H 1.08994 * 109.52709 * 303.06050 * 24 23 3 46 46 H 1.09004 * 109.52012 * 63.25038 * 24 23 3 47 47 H 1.09002 * 109.40012 * 297.49750 * 25 24 23 48 48 H 1.08997 * 109.49188 * 177.51398 * 25 24 23 49 49 H 1.08996 * 109.48690 * 301.17899 * 27 26 25 50 50 H 1.09007 * 109.48868 * 181.14711 * 27 26 25 51 51 H 1.09003 * 109.52327 * 182.48282 * 28 27 26 52 52 H 1.09000 * 109.57702 * 62.32468 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8417 5 7 1.6525 2.0974 1.2518 6 6 0.4352 2.6644 1.3671 7 8 -0.3706 2.5633 0.4621 8 7 0.1111 3.3432 2.4853 9 6 1.0301 3.3810 3.6310 10 6 1.2829 4.8431 4.0123 11 6 -0.0568 5.5409 4.2580 12 6 -0.8910 5.5135 2.9753 13 1 -0.3425 6.0087 2.1740 14 6 -2.1965 6.2291 3.2088 15 1 -2.4093 6.6628 4.1748 16 6 -3.1193 6.3302 2.1894 17 7 -2.8600 5.8025 1.0131 18 14 -4.7379 7.2167 2.4792 19 1 -4.4687 8.6264 2.8606 20 1 -5.5487 7.1859 1.2355 21 1 -5.4831 6.5417 3.5721 22 6 -1.1683 4.0590 2.5822 23 6 3.5648 1.4443 -0.1258 24 6 4.1776 0.6910 1.0589 25 6 5.7041 0.7675 0.9676 26 8 6.1121 2.1368 0.9449 27 6 5.6078 2.8776 -0.1682 28 6 4.0776 2.8877 -0.1214 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 2.2720 2.1230 1.9979 35 1 0.5839 2.8552 4.4751 36 1 1.9728 2.9062 3.3590 37 1 1.8859 4.8834 4.9195 38 1 1.8109 5.3445 3.2013 39 1 -0.5952 5.0239 5.0523 40 1 0.1211 6.5748 4.5534 41 1 -3.5091 5.8739 0.2958 42 1 -1.6763 4.0316 1.6181 43 1 -1.7939 3.5885 3.3407 44 1 3.8544 0.9573 -1.0569 45 1 3.8464 1.1474 1.9915 46 1 3.8614 -0.3518 1.0302 47 1 6.0374 0.2736 0.0549 48 1 6.1454 0.2709 1.8317 49 1 5.9400 2.4114 -1.0958 50 1 5.9796 3.9012 -0.1224 51 1 3.6900 3.4146 -0.9934 52 1 3.7433 3.3903 0.7862 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596444331.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:52 Heat of formation + Delta-G solvation = -108.544112 kcal Electronic energy + Delta-G solvation = -30080.074500 eV Core-core repulsion = 26271.087608 eV Total energy + Delta-G solvation = -3808.986893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.64606 -40.30270 -38.69284 -37.19061 -35.36477 -33.83708 -33.56001 -32.64619 -31.94627 -31.41987 -28.25753 -26.97168 -25.90586 -24.75809 -24.15310 -23.43303 -22.19805 -21.78106 -20.54609 -20.27431 -19.04057 -18.19324 -17.48519 -16.94849 -16.87298 -16.65233 -16.44546 -15.75381 -15.54265 -15.38048 -15.21685 -15.05247 -14.85225 -14.62164 -14.37238 -14.26273 -14.23235 -13.66265 -13.52126 -13.43012 -12.99778 -12.85418 -12.68981 -12.57009 -12.34960 -12.27413 -12.23835 -12.18638 -11.98377 -11.86651 -11.78503 -11.62283 -11.29979 -11.09675 -11.08817 -10.93355 -10.76756 -10.49927 -10.41828 -9.90007 -9.19983 -8.09419 -6.26662 1.40586 1.42306 1.50521 1.87407 2.38057 2.42342 3.03124 3.09266 3.21189 3.56606 3.73796 3.83822 4.03292 4.10497 4.15509 4.25462 4.26946 4.28621 4.37246 4.38073 4.49762 4.59745 4.65750 4.73166 4.76651 4.79787 4.81143 4.84939 4.86627 4.87922 4.91602 5.06267 5.06342 5.10255 5.17325 5.18731 5.26528 5.27454 5.30682 5.35702 5.41040 5.53770 5.57958 5.68854 5.75985 5.90895 6.00146 6.22193 6.34245 6.38439 6.85958 7.22152 7.43149 7.81297 8.93413 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.016959 B = 0.003511 C = 0.003219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1650.687673 B = 7972.649931 C = 8696.497922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.122 4.122 3 C 0.168 3.832 4 H 0.053 0.947 5 N -0.726 5.726 6 C 0.695 3.305 7 O -0.626 6.626 8 N -0.631 5.631 9 C 0.112 3.888 10 C -0.124 4.124 11 C -0.104 4.104 12 C 0.040 3.960 13 H -0.016 1.016 14 C -0.538 4.538 15 H 0.061 0.939 16 C 0.011 3.989 17 N -0.913 5.913 18 Si 0.957 3.043 19 H -0.268 1.268 20 H -0.289 1.289 21 H -0.267 1.267 22 C 0.148 3.852 23 C -0.085 4.085 24 C -0.148 4.148 25 C 0.058 3.942 26 O -0.403 6.403 27 C 0.065 3.935 28 C -0.152 4.152 29 H 0.031 0.969 30 H 0.030 0.970 31 H 0.053 0.947 32 H 0.090 0.910 33 H 0.081 0.919 34 H 0.401 0.599 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.259 0.741 42 H 0.075 0.925 43 H 0.028 0.972 44 H 0.104 0.896 45 H 0.063 0.937 46 H 0.097 0.903 47 H 0.063 0.937 48 H 0.106 0.894 49 H 0.065 0.935 50 H 0.094 0.906 51 H 0.065 0.935 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.576 -13.180 1.135 23.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.161 4.161 3 C 0.063 3.937 4 H 0.071 0.929 5 N -0.387 5.387 6 C 0.396 3.604 7 O -0.506 6.506 8 N -0.367 5.367 9 C -0.010 4.010 10 C -0.162 4.162 11 C -0.142 4.142 12 C 0.020 3.980 13 H 0.002 0.998 14 C -0.577 4.577 15 H 0.079 0.921 16 C -0.189 4.189 17 N -0.552 5.552 18 Si 0.782 3.218 19 H -0.193 1.193 20 H -0.215 1.215 21 H -0.192 1.192 22 C 0.025 3.975 23 C -0.104 4.104 24 C -0.186 4.186 25 C -0.018 4.018 26 O -0.323 6.323 27 C -0.012 4.012 28 C -0.189 4.189 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.241 0.759 35 H 0.094 0.906 36 H 0.112 0.888 37 H 0.120 0.880 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.046 0.954 44 H 0.122 0.878 45 H 0.082 0.918 46 H 0.115 0.885 47 H 0.082 0.918 48 H 0.124 0.876 49 H 0.083 0.917 50 H 0.113 0.887 51 H 0.084 0.916 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 19.052 -13.188 0.446 23.175 hybrid contribution -1.551 0.858 -0.176 1.781 sum 17.501 -12.330 0.270 21.410 Atomic orbital electron populations 1.21715 0.97224 0.99649 1.00999 1.21951 0.94780 0.95800 1.03554 1.20895 0.94440 0.92975 0.85417 0.92907 1.45256 1.14557 1.61109 1.17737 1.16132 0.82984 0.78716 0.82533 1.90895 1.51373 1.66629 1.41752 1.47664 1.21185 1.52979 1.14882 1.21781 0.93028 0.97659 0.88547 1.21890 0.97308 0.95004 1.02047 1.21495 0.95484 0.99573 0.97617 1.18897 0.94319 0.91630 0.93127 0.99758 1.21495 1.02587 1.35707 0.97882 0.92063 1.25883 1.01992 0.96157 0.94833 1.70093 1.36479 1.45438 1.03166 0.85634 0.79477 0.79354 0.77350 1.19294 1.21488 1.19233 1.21492 0.82353 0.91976 1.01699 1.21463 0.91772 0.96232 1.00957 1.22298 0.96465 1.02068 0.97769 1.22741 0.93550 0.82299 1.03238 1.87917 1.73119 1.23466 1.47760 1.22590 0.92021 0.97132 0.89411 1.22214 0.97138 0.97043 1.02553 0.95015 0.95098 0.92798 0.89195 0.90074 0.75930 0.90568 0.88831 0.88012 0.93314 0.92532 0.93098 0.93238 0.90625 0.95389 0.87806 0.91849 0.88480 0.91829 0.87580 0.91706 0.88742 0.91589 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.26 8.46 71.98 0.61 -3.65 16 2 C -0.12 -2.65 5.11 30.60 0.16 -2.50 16 3 C 0.17 4.12 2.01 44.99 0.09 4.21 16 4 H 0.05 1.69 7.64 -2.39 -0.02 1.67 16 5 N -0.73 -20.76 4.13 -457.82 -1.89 -22.65 16 6 C 0.69 28.43 7.03 179.05 1.26 29.68 16 7 O -0.63 -31.82 12.58 -4.00 -0.05 -31.87 16 8 N -0.63 -25.79 2.97 -836.90 -2.49 -28.28 16 9 C 0.11 3.29 6.43 86.36 0.56 3.84 16 10 C -0.12 -3.76 6.08 30.67 0.19 -3.58 16 11 C -0.10 -4.10 5.11 30.62 0.16 -3.94 16 12 C 0.04 2.04 2.25 -11.46 -0.03 2.02 16 13 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 14 C -0.54 -30.22 8.56 25.60 0.22 -30.00 16 15 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 16 C 0.01 0.62 5.30 84.65 0.45 1.07 16 17 N -0.91 -56.55 11.39 21.45 0.24 -56.30 16 18 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 19 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 20 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 21 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 22 C 0.15 7.58 5.39 86.36 0.47 8.04 16 23 C -0.09 -1.42 2.13 -10.67 -0.02 -1.44 16 24 C -0.15 -1.91 4.85 30.69 0.15 -1.76 16 25 C 0.06 0.71 6.84 72.02 0.49 1.20 16 26 O -0.40 -7.29 10.77 -148.98 -1.60 -8.89 16 27 C 0.06 1.05 6.84 72.01 0.49 1.54 16 28 C -0.15 -2.92 5.31 30.69 0.16 -2.76 16 29 H 0.03 1.18 5.54 -2.39 -0.01 1.17 16 30 H 0.03 1.09 7.80 -2.39 -0.02 1.08 16 31 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 32 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 1.45 6.79 -2.39 -0.02 1.43 16 34 H 0.40 9.29 4.06 -92.70 -0.38 8.91 16 35 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.09 2.07 5.56 -2.39 -0.01 2.06 16 37 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 38 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.26 15.50 8.31 -92.70 -0.77 14.73 16 42 H 0.08 4.64 5.15 -2.38 -0.01 4.63 16 43 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.06 0.91 6.41 -2.39 -0.02 0.90 16 46 H 0.10 0.94 6.74 -2.38 -0.02 0.93 16 47 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 48 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 51 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 52 H 0.06 1.31 7.36 -2.39 -0.02 1.29 16 Total: -1.00 -74.90 381.65 2.15 -72.74 By element: Atomic # 1 Polarization: 25.74 SS G_CDS: 0.52 Total: 26.26 kcal Atomic # 6 Polarization: -3.42 SS G_CDS: 5.39 Total: 1.98 kcal Atomic # 7 Polarization: -103.09 SS G_CDS: -4.13 Total: -107.22 kcal Atomic # 8 Polarization: -39.11 SS G_CDS: -1.65 Total: -40.76 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -74.90 2.15 -72.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596444331.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.801 kcal (2) G-P(sol) polarization free energy of solvation -74.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds