Wall clock time and date at job start Tue Mar 31 2020 14:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47161 * 2 1 4 4 H 1.09002 * 109.47085 * 54.47853 * 3 2 1 5 5 N 1.46901 * 109.47049 * 294.48155 * 3 2 1 6 6 C 1.46907 * 111.00328 * 94.82239 * 5 3 2 7 7 C 1.53070 * 109.43965 * 87.35806 * 6 5 3 8 8 C 1.53199 * 109.29099 * 181.23933 * 7 6 5 9 9 N 1.46924 * 108.89084 * 305.57853 * 8 7 6 10 10 C 1.36939 * 120.63030 * 233.51167 * 9 8 7 11 11 H 1.08000 * 119.99807 * 147.73542 * 10 9 8 12 12 C 1.38809 * 120.00372 * 327.73743 * 10 9 8 13 13 N 1.31610 * 120.00225 * 167.69792 * 12 10 9 14 14 Si 1.86806 * 119.99571 * 347.69944 * 12 10 9 15 15 H 1.48492 * 109.47168 * 86.77054 * 14 12 10 16 16 H 1.48499 * 109.46852 * 206.76772 * 14 12 10 17 17 H 1.48493 * 109.47020 * 326.76446 * 14 12 10 18 18 C 1.46928 * 118.74024 * 53.54096 * 9 8 7 19 19 C 1.53033 * 109.46184 * 207.56860 * 6 5 3 20 20 C 1.52996 * 109.47185 * 174.48458 * 3 2 1 21 21 C 1.50704 * 112.84939 * 175.07753 * 20 3 2 22 22 O 1.20817 * 120.00212 * 5.96049 * 21 20 3 23 23 O 1.34231 * 119.99703 * 185.96479 * 21 20 3 24 24 C 1.45203 * 116.99964 * 180.02562 * 23 21 20 25 25 C 1.53780 * 113.61997 * 43.76886 * 20 3 2 26 26 C 1.53778 * 87.08217 * 220.02396 * 25 20 3 27 27 C 1.53780 * 87.08307 * 25.43077 * 26 25 20 28 28 H 1.09002 * 109.47053 * 306.32498 * 1 2 3 29 29 H 1.09006 * 109.47132 * 66.32038 * 1 2 3 30 30 H 1.09001 * 109.47417 * 186.32549 * 1 2 3 31 31 H 1.09003 * 109.47101 * 239.99955 * 2 1 3 32 32 H 1.09003 * 109.47019 * 119.99713 * 2 1 3 33 33 H 1.00898 * 111.00099 * 218.77696 * 5 3 2 34 34 H 1.09001 * 109.45108 * 327.53859 * 6 5 3 35 35 H 1.09003 * 109.38575 * 61.37030 * 7 6 5 36 36 H 1.08997 * 109.62785 * 301.25291 * 7 6 5 37 37 H 1.09002 * 109.58447 * 185.72335 * 8 7 6 38 38 H 1.08993 * 109.58360 * 65.43975 * 8 7 6 39 39 H 0.97005 * 120.00437 * 179.97438 * 13 12 10 40 40 H 1.09004 * 109.58844 * 66.17347 * 18 9 8 41 41 H 1.09002 * 109.58897 * 186.45350 * 18 9 8 42 42 H 1.09006 * 109.49901 * 58.66842 * 19 6 5 43 43 H 1.09009 * 109.52528 * 298.59482 * 19 6 5 44 44 H 1.08998 * 109.46900 * 299.99703 * 24 23 21 45 45 H 1.09003 * 109.47320 * 59.99256 * 24 23 21 46 46 H 1.08994 * 109.47490 * 179.97438 * 24 23 21 47 47 H 1.09007 * 113.61059 * 334.57030 * 25 20 3 48 48 H 1.08998 * 113.61645 * 105.46715 * 25 20 3 49 49 H 1.09000 * 113.61292 * 270.88081 * 26 25 20 50 50 H 1.09002 * 113.69339 * 139.99081 * 26 25 20 51 51 H 1.08998 * 113.61008 * 220.02358 * 27 26 25 52 52 H 1.08994 * 113.61796 * 89.12243 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5982 1.9841 0.8364 5 7 1.6621 2.0955 -1.2605 6 6 0.4053 2.8413 -1.1110 7 6 0.7086 4.2554 -0.6098 8 6 -0.6061 5.0200 -0.4256 9 7 -1.3644 4.9721 -1.6831 10 6 -1.8126 6.1244 -2.2718 11 1 -1.8844 6.1886 -3.3475 12 6 -2.1745 7.2100 -1.4861 13 7 -2.3714 8.3872 -2.0407 14 14 -2.3821 6.9999 0.3584 15 1 -1.0693 7.1820 1.0281 16 1 -3.3418 8.0126 0.8670 17 1 -2.9002 5.6385 0.6464 18 6 -1.6334 3.6644 -2.2966 19 6 -0.3072 2.9160 -2.4633 20 6 3.5637 1.4447 0.1386 21 6 4.1593 2.8247 0.0287 22 8 3.4369 3.7906 -0.0422 23 8 5.4923 2.9807 0.0095 24 6 5.9957 4.3385 -0.0976 25 6 4.2641 0.3975 -0.7431 26 6 5.2069 0.1429 0.4448 27 6 4.0729 0.6488 1.3520 28 1 -0.3633 0.6088 0.8280 29 1 -0.3634 0.4128 -0.9412 30 1 -0.3634 -1.0214 0.1132 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.4017 2.6961 -1.5925 34 1 -0.2353 2.3324 -0.3906 35 1 1.3308 4.7725 -1.3403 36 1 1.2344 4.2011 0.3434 37 1 -0.3925 6.0571 -0.1669 38 1 -1.1892 4.5574 0.3707 39 1 -2.6247 9.1458 -1.4917 40 1 -2.2993 3.0890 -1.6535 41 1 -2.1000 3.8071 -3.2713 42 1 -0.5019 1.9074 -2.8282 43 1 0.3224 3.4461 -3.1780 44 1 5.6349 4.7877 -1.0228 45 1 5.6443 4.9243 0.7518 46 1 7.0855 4.3228 -0.1018 47 1 3.6337 -0.4566 -0.9910 48 1 4.7634 0.8230 -1.6135 49 1 6.0880 0.7845 0.4482 50 1 5.4490 -0.9094 0.5942 51 1 4.4180 1.2774 2.1728 52 1 3.3903 -0.1363 1.6769 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611522805.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:58 Heat of formation + Delta-G solvation = -36.796642 kcal Electronic energy + Delta-G solvation = -30463.550723 eV Core-core repulsion = 26657.675035 eV Total energy + Delta-G solvation = -3805.875689 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.53413 -39.13164 -38.06033 -36.68416 -35.40925 -32.94009 -31.53589 -30.22411 -29.80797 -28.32334 -27.27709 -26.10311 -24.74275 -23.99126 -22.53974 -21.79707 -21.53279 -21.00787 -19.65930 -18.74637 -17.54364 -16.90637 -16.56478 -16.49874 -15.85186 -15.59611 -15.08609 -14.69481 -14.08223 -14.02449 -13.96637 -13.61311 -13.48072 -13.36582 -13.28556 -12.79818 -12.76201 -12.60724 -12.40161 -12.20297 -12.11250 -11.84445 -11.72367 -11.57067 -11.31159 -11.03204 -10.98626 -10.78511 -10.75853 -10.62703 -10.56150 -10.33477 -10.33251 -10.23149 -9.92303 -9.80156 -9.47407 -9.41775 -8.57600 -8.01991 -6.78203 -5.85485 -3.27503 1.98892 2.46088 3.37924 3.51696 3.55548 4.02144 4.11701 4.28983 4.49815 4.59971 4.66213 4.68719 4.92259 5.02147 5.04714 5.11286 5.13811 5.16242 5.34319 5.37221 5.43281 5.44815 5.46902 5.50761 5.61732 5.64632 5.71422 5.72572 5.76627 5.87588 5.95610 6.00133 6.04584 6.08323 6.17752 6.24541 6.27995 6.35914 6.38708 6.50904 6.52725 6.70760 6.79768 6.82593 6.92610 7.09478 7.41120 7.58305 7.70257 8.12172 8.43950 9.05255 9.81385 10.22653 11.31086 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.015447 B = 0.004079 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.177810 B = 6862.119919 C = 7806.546204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.110 4.110 3 C 0.114 3.886 4 H 0.055 0.945 5 N -0.675 5.675 6 C 0.093 3.907 7 C -0.148 4.148 8 C 0.124 3.876 9 N -0.608 5.608 10 C -0.255 4.255 11 H 0.083 0.917 12 C 0.022 3.978 13 N -0.918 5.918 14 Si 0.895 3.105 15 H -0.289 1.289 16 H -0.306 1.306 17 H -0.272 1.272 18 C 0.149 3.851 19 C -0.118 4.118 20 C -0.092 4.092 21 C 0.476 3.524 22 O -0.485 6.485 23 O -0.356 6.356 24 C 0.033 3.967 25 C -0.113 4.113 26 C -0.142 4.142 27 C -0.120 4.120 28 H 0.048 0.952 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.339 0.661 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.069 0.931 38 H 0.020 0.980 39 H 0.261 0.739 40 H 0.019 0.981 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.100 0.900 47 H 0.103 0.897 48 H 0.073 0.927 49 H 0.091 0.909 50 H 0.072 0.928 51 H 0.070 0.930 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.353 -19.595 6.423 26.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.147 4.147 3 C 0.003 3.997 4 H 0.073 0.927 5 N -0.306 5.306 6 C -0.016 4.016 7 C -0.188 4.188 8 C -0.002 4.002 9 N -0.332 5.332 10 C -0.384 4.384 11 H 0.101 0.899 12 C -0.176 4.176 13 N -0.561 5.561 14 Si 0.727 3.273 15 H -0.217 1.217 16 H -0.235 1.235 17 H -0.197 1.197 18 C 0.023 3.977 19 C -0.158 4.158 20 C -0.094 4.094 21 C 0.318 3.682 22 O -0.370 6.370 23 O -0.272 6.272 24 C -0.060 4.060 25 C -0.151 4.151 26 C -0.179 4.179 27 C -0.158 4.158 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.159 0.841 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.038 0.962 39 H 0.071 0.929 40 H 0.037 0.963 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.081 0.919 46 H 0.118 0.882 47 H 0.121 0.879 48 H 0.091 0.909 49 H 0.109 0.891 50 H 0.090 0.910 51 H 0.089 0.911 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 16.789 -19.643 6.140 26.560 hybrid contribution 0.278 1.306 1.628 2.106 sum 17.067 -18.337 7.769 26.228 Atomic orbital electron populations 1.21831 0.95447 1.00918 1.02751 1.21691 0.96463 0.94970 1.01615 1.21287 0.89028 0.96190 0.93183 0.92651 1.60852 1.06586 1.36292 1.26916 1.21640 0.90086 0.92189 0.97679 1.22587 0.98743 0.96605 1.00892 1.21378 0.90792 0.99204 0.88849 1.44336 1.61505 1.02406 1.24948 1.18942 1.37605 0.89330 0.92532 0.89908 1.25376 0.98511 0.95906 0.97829 1.69764 1.51228 0.99723 1.35431 0.86830 0.76588 0.77030 0.86865 1.21692 1.23461 1.19679 1.20938 0.93362 0.86193 0.97217 1.21971 0.98108 0.99459 0.96233 1.22012 0.96263 0.89370 1.01762 1.23138 0.80807 0.91525 0.72726 1.90785 1.60859 1.41587 1.43814 1.86486 1.24183 1.32752 1.83817 1.23287 0.99566 0.80381 1.02786 1.22964 0.97440 0.97718 0.96936 1.22952 0.97541 1.01740 0.95663 1.23012 0.98405 0.99185 0.95198 0.93270 0.91176 0.93222 0.90813 0.92063 0.84105 0.90930 0.91981 0.92516 0.91304 0.96217 0.92874 0.96280 0.91925 0.92394 0.92346 0.91619 0.91893 0.88201 0.87903 0.90870 0.89058 0.90961 0.91114 0.88081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.49 37.16 0.32 -1.33 16 2 C -0.11 -1.06 4.71 -26.73 -0.13 -1.19 16 3 C 0.11 1.35 1.49 -67.71 -0.10 1.25 16 4 H 0.06 0.77 7.29 -51.93 -0.38 0.40 16 5 N -0.68 -9.54 5.77 -99.68 -0.58 -10.12 16 6 C 0.09 1.57 1.33 -67.66 -0.09 1.48 16 7 C -0.15 -2.96 4.12 -26.59 -0.11 -3.07 16 8 C 0.12 2.93 4.15 -3.71 -0.02 2.92 16 9 N -0.61 -15.31 2.74 -172.32 -0.47 -15.78 16 10 C -0.26 -7.51 10.06 -15.06 -0.15 -7.66 16 11 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 12 C 0.02 0.67 5.35 -17.44 -0.09 0.58 16 13 N -0.92 -29.28 13.97 55.49 0.78 -28.51 16 14 Si 0.90 23.86 24.24 -169.99 -4.12 19.74 16 15 H -0.29 -7.52 6.46 56.52 0.37 -7.15 16 16 H -0.31 -8.20 7.11 56.52 0.40 -7.80 16 17 H -0.27 -7.10 6.52 56.52 0.37 -6.73 16 18 C 0.15 3.12 6.52 -3.71 -0.02 3.09 16 19 C -0.12 -2.09 5.69 -26.62 -0.15 -2.24 16 20 C -0.09 -0.94 0.94 -154.85 -0.15 -1.09 16 21 C 0.48 5.91 6.42 36.01 0.23 6.14 16 22 O -0.48 -7.64 11.88 -18.74 -0.22 -7.86 16 23 O -0.36 -3.78 8.67 -39.26 -0.34 -4.12 16 24 C 0.03 0.30 10.56 101.05 1.07 1.36 16 25 C -0.11 -0.94 6.88 -25.92 -0.18 -1.11 16 26 C -0.14 -1.00 7.63 -25.92 -0.20 -1.19 16 27 C -0.12 -0.95 7.02 -25.92 -0.18 -1.13 16 28 H 0.05 0.57 7.75 -51.93 -0.40 0.16 16 29 H 0.07 0.87 6.76 -51.93 -0.35 0.52 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.69 6.38 -51.93 -0.33 0.36 16 32 H 0.06 0.48 5.97 -51.93 -0.31 0.17 16 33 H 0.34 5.23 5.92 -39.29 -0.23 4.99 16 34 H 0.07 1.22 5.48 -51.93 -0.28 0.94 16 35 H 0.06 1.35 8.11 -51.93 -0.42 0.93 16 36 H 0.06 1.11 6.43 -51.93 -0.33 0.78 16 37 H 0.07 1.80 4.43 -51.93 -0.23 1.57 16 38 H 0.02 0.47 6.87 -51.93 -0.36 0.11 16 39 H 0.26 7.92 8.31 -40.82 -0.34 7.59 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 1.30 7.93 -51.93 -0.41 0.89 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 43 H 0.06 1.12 8.14 -51.92 -0.42 0.69 16 44 H 0.07 0.63 8.13 -51.93 -0.42 0.21 16 45 H 0.06 0.59 8.13 -51.93 -0.42 0.16 16 46 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.10 0.77 5.74 -51.93 -0.30 0.47 16 48 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 49 H 0.09 0.69 6.86 -51.93 -0.36 0.33 16 50 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 51 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 52 H 0.10 0.68 5.96 -51.93 -0.31 0.37 16 LS Contribution 374.26 15.07 5.64 5.64 Total: -1.00 -32.93 374.26 -8.13 -41.05 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -8.86 Total: 3.15 kcal Atomic # 6 Polarization: -3.24 SS G_CDS: 0.05 Total: -3.19 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -0.27 Total: -54.41 kcal Atomic # 8 Polarization: -11.42 SS G_CDS: -0.56 Total: -11.98 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -4.12 Total: 19.74 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.93 -8.13 -41.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611522805.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.255 kcal (2) G-P(sol) polarization free energy of solvation -32.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds