Wall clock time and date at job start Tue Mar 31 2020 14:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47161 * 2 1 4 4 H 1.09002 * 109.47085 * 54.47853 * 3 2 1 5 5 N 1.46901 * 109.47049 * 294.48155 * 3 2 1 6 6 C 1.46907 * 111.00328 * 94.82239 * 5 3 2 7 7 C 1.53070 * 109.43965 * 87.35806 * 6 5 3 8 8 C 1.53199 * 109.29099 * 181.23933 * 7 6 5 9 9 N 1.46924 * 108.89084 * 305.57853 * 8 7 6 10 10 C 1.36939 * 120.63030 * 233.51167 * 9 8 7 11 11 H 1.08000 * 119.99807 * 147.73542 * 10 9 8 12 12 C 1.38809 * 120.00372 * 327.73743 * 10 9 8 13 13 N 1.31610 * 120.00225 * 167.69792 * 12 10 9 14 14 Si 1.86806 * 119.99571 * 347.69944 * 12 10 9 15 15 H 1.48492 * 109.47168 * 86.77054 * 14 12 10 16 16 H 1.48499 * 109.46852 * 206.76772 * 14 12 10 17 17 H 1.48493 * 109.47020 * 326.76446 * 14 12 10 18 18 C 1.46928 * 118.74024 * 53.54096 * 9 8 7 19 19 C 1.53033 * 109.46184 * 207.56860 * 6 5 3 20 20 C 1.52996 * 109.47185 * 174.48458 * 3 2 1 21 21 C 1.50704 * 112.84939 * 175.07753 * 20 3 2 22 22 O 1.20817 * 120.00212 * 5.96049 * 21 20 3 23 23 O 1.34231 * 119.99703 * 185.96479 * 21 20 3 24 24 C 1.45203 * 116.99964 * 180.02562 * 23 21 20 25 25 C 1.53780 * 113.61997 * 43.76886 * 20 3 2 26 26 C 1.53778 * 87.08217 * 220.02396 * 25 20 3 27 27 C 1.53780 * 87.08307 * 25.43077 * 26 25 20 28 28 H 1.09002 * 109.47053 * 306.32498 * 1 2 3 29 29 H 1.09006 * 109.47132 * 66.32038 * 1 2 3 30 30 H 1.09001 * 109.47417 * 186.32549 * 1 2 3 31 31 H 1.09003 * 109.47101 * 239.99955 * 2 1 3 32 32 H 1.09003 * 109.47019 * 119.99713 * 2 1 3 33 33 H 1.00898 * 111.00099 * 218.77696 * 5 3 2 34 34 H 1.09001 * 109.45108 * 327.53859 * 6 5 3 35 35 H 1.09003 * 109.38575 * 61.37030 * 7 6 5 36 36 H 1.08997 * 109.62785 * 301.25291 * 7 6 5 37 37 H 1.09002 * 109.58447 * 185.72335 * 8 7 6 38 38 H 1.08993 * 109.58360 * 65.43975 * 8 7 6 39 39 H 0.97005 * 120.00437 * 179.97438 * 13 12 10 40 40 H 1.09004 * 109.58844 * 66.17347 * 18 9 8 41 41 H 1.09002 * 109.58897 * 186.45350 * 18 9 8 42 42 H 1.09006 * 109.49901 * 58.66842 * 19 6 5 43 43 H 1.09009 * 109.52528 * 298.59482 * 19 6 5 44 44 H 1.08998 * 109.46900 * 299.99703 * 24 23 21 45 45 H 1.09003 * 109.47320 * 59.99256 * 24 23 21 46 46 H 1.08994 * 109.47490 * 179.97438 * 24 23 21 47 47 H 1.09007 * 113.61059 * 334.57030 * 25 20 3 48 48 H 1.08998 * 113.61645 * 105.46715 * 25 20 3 49 49 H 1.09000 * 113.61292 * 270.88081 * 26 25 20 50 50 H 1.09002 * 113.69339 * 139.99081 * 26 25 20 51 51 H 1.08998 * 113.61008 * 220.02358 * 27 26 25 52 52 H 1.08994 * 113.61796 * 89.12243 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5982 1.9841 0.8364 5 7 1.6621 2.0955 -1.2605 6 6 0.4053 2.8413 -1.1110 7 6 0.7086 4.2554 -0.6098 8 6 -0.6061 5.0200 -0.4256 9 7 -1.3644 4.9721 -1.6831 10 6 -1.8126 6.1244 -2.2718 11 1 -1.8844 6.1886 -3.3475 12 6 -2.1745 7.2100 -1.4861 13 7 -2.3714 8.3872 -2.0407 14 14 -2.3821 6.9999 0.3584 15 1 -1.0693 7.1820 1.0281 16 1 -3.3418 8.0126 0.8670 17 1 -2.9002 5.6385 0.6464 18 6 -1.6334 3.6644 -2.2966 19 6 -0.3072 2.9160 -2.4633 20 6 3.5637 1.4447 0.1386 21 6 4.1593 2.8247 0.0287 22 8 3.4369 3.7906 -0.0422 23 8 5.4923 2.9807 0.0095 24 6 5.9957 4.3385 -0.0976 25 6 4.2641 0.3975 -0.7431 26 6 5.2069 0.1429 0.4448 27 6 4.0729 0.6488 1.3520 28 1 -0.3633 0.6088 0.8280 29 1 -0.3634 0.4128 -0.9412 30 1 -0.3634 -1.0214 0.1132 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 2.4017 2.6961 -1.5925 34 1 -0.2353 2.3324 -0.3906 35 1 1.3308 4.7725 -1.3403 36 1 1.2344 4.2011 0.3434 37 1 -0.3925 6.0571 -0.1669 38 1 -1.1892 4.5574 0.3707 39 1 -2.6247 9.1458 -1.4917 40 1 -2.2993 3.0890 -1.6535 41 1 -2.1000 3.8071 -3.2713 42 1 -0.5019 1.9074 -2.8282 43 1 0.3224 3.4461 -3.1780 44 1 5.6349 4.7877 -1.0228 45 1 5.6443 4.9243 0.7518 46 1 7.0855 4.3228 -0.1018 47 1 3.6337 -0.4566 -0.9910 48 1 4.7634 0.8230 -1.6135 49 1 6.0880 0.7845 0.4482 50 1 5.4490 -0.9094 0.5942 51 1 4.4180 1.2774 2.1728 52 1 3.3903 -0.1363 1.6769 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611522805.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:57 Heat of formation + Delta-G solvation = -58.168716 kcal Electronic energy + Delta-G solvation = -30464.477486 eV Core-core repulsion = 26657.675035 eV Total energy + Delta-G solvation = -3806.802451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.40134 -40.15698 -39.41763 -37.72180 -36.70639 -34.56863 -33.19305 -31.95973 -31.19216 -29.19687 -28.35898 -26.77567 -26.14303 -25.27063 -24.29033 -23.19702 -22.48708 -22.01554 -21.10712 -19.80452 -18.85931 -18.43372 -17.57977 -17.36902 -17.34724 -16.73584 -16.36890 -15.94587 -15.60285 -15.40549 -15.15122 -14.90065 -14.71988 -14.61125 -14.44313 -14.18829 -14.05646 -13.84782 -13.74950 -13.34395 -13.28828 -13.13614 -12.77176 -12.64571 -12.55800 -12.48190 -12.30739 -12.07434 -11.89521 -11.84572 -11.74958 -11.64692 -11.50948 -11.44489 -11.36754 -11.17591 -11.12003 -10.88051 -10.76182 -9.28122 -8.87869 -8.20495 -5.59349 1.06097 1.23904 1.32274 1.42833 1.65326 2.36194 3.04471 3.06783 3.32292 3.37459 3.57341 3.73325 3.83385 3.90598 3.95178 4.08994 4.24499 4.25831 4.26280 4.33817 4.35668 4.38944 4.43890 4.51221 4.63267 4.65543 4.70384 4.74965 4.77241 4.84206 4.88112 4.91752 4.96311 5.05252 5.08631 5.13661 5.17459 5.18492 5.21649 5.24052 5.25459 5.36620 5.42695 5.48481 5.57395 5.63278 5.86974 6.09777 6.17687 6.42125 6.68867 6.89454 7.57705 8.01332 8.99732 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.015447 B = 0.004079 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.177810 B = 6862.119919 C = 7806.546204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.103 4.103 3 C 0.112 3.888 4 H 0.034 0.966 5 N -0.665 5.665 6 C 0.105 3.895 7 C -0.131 4.131 8 C 0.121 3.879 9 N -0.621 5.621 10 C -0.248 4.248 11 H 0.050 0.950 12 C -0.035 4.035 13 N -0.963 5.963 14 Si 0.957 3.043 15 H -0.282 1.282 16 H -0.307 1.307 17 H -0.259 1.259 18 C 0.144 3.856 19 C -0.105 4.105 20 C -0.102 4.102 21 C 0.473 3.527 22 O -0.528 6.528 23 O -0.350 6.350 24 C 0.029 3.971 25 C -0.108 4.108 26 C -0.131 4.131 27 C -0.113 4.113 28 H 0.038 0.962 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.332 0.668 34 H 0.081 0.919 35 H 0.036 0.964 36 H 0.060 0.940 37 H 0.040 0.960 38 H 0.030 0.970 39 H 0.262 0.738 40 H 0.037 0.963 41 H 0.056 0.944 42 H 0.088 0.912 43 H 0.040 0.960 44 H 0.053 0.947 45 H 0.055 0.945 46 H 0.135 0.865 47 H 0.118 0.882 48 H 0.064 0.936 49 H 0.084 0.916 50 H 0.095 0.905 51 H 0.065 0.935 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.758 -23.453 8.050 31.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.140 4.140 3 C 0.002 3.998 4 H 0.052 0.948 5 N -0.295 5.295 6 C -0.005 4.005 7 C -0.171 4.171 8 C -0.004 4.004 9 N -0.346 5.346 10 C -0.378 4.378 11 H 0.068 0.932 12 C -0.229 4.229 13 N -0.609 5.609 14 Si 0.786 3.214 15 H -0.210 1.210 16 H -0.236 1.236 17 H -0.184 1.184 18 C 0.019 3.981 19 C -0.145 4.145 20 C -0.104 4.104 21 C 0.318 3.682 22 O -0.417 6.417 23 O -0.266 6.266 24 C -0.064 4.064 25 C -0.145 4.145 26 C -0.168 4.168 27 C -0.151 4.151 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.150 0.850 34 H 0.099 0.901 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.048 0.952 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.107 0.893 43 H 0.058 0.942 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.153 0.847 47 H 0.136 0.864 48 H 0.083 0.917 49 H 0.103 0.897 50 H 0.113 0.887 51 H 0.084 0.916 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 18.231 -23.569 7.774 30.794 hybrid contribution -0.077 2.502 1.045 2.713 sum 18.154 -21.066 8.819 29.174 Atomic orbital electron populations 1.21829 0.96219 1.01710 1.01310 1.21689 0.95678 0.93294 1.03379 1.21412 0.90348 0.97062 0.90987 0.94821 1.60877 1.05253 1.34979 1.28360 1.21464 0.91587 0.90409 0.97011 1.22406 0.96157 0.98028 1.00526 1.21386 0.92444 0.98220 0.88359 1.44462 1.61941 1.02743 1.25444 1.18889 1.36554 0.90974 0.91399 0.93228 1.26023 0.99007 0.95542 1.02322 1.69899 1.53261 1.00594 1.37152 0.85814 0.76618 0.77330 0.81590 1.20962 1.23555 1.18354 1.21142 0.95465 0.84605 0.96903 1.21818 0.96003 1.00226 0.96437 1.22136 0.95053 0.88768 1.04396 1.23707 0.81058 0.92065 0.71419 1.90765 1.61773 1.43120 1.46003 1.86494 1.23335 1.33545 1.83259 1.23484 1.01538 0.79596 1.01825 1.23013 0.97583 0.97108 0.96794 1.22891 0.96714 1.02964 0.94235 1.23084 0.98895 0.98959 0.94172 0.94334 0.92897 0.91408 0.89767 0.89474 0.84961 0.90057 0.94504 0.92125 0.94136 0.95218 0.92918 0.94515 0.92531 0.89331 0.94152 0.92809 0.92657 0.84709 0.86426 0.91706 0.89740 0.88658 0.91595 0.86158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.82 8.49 71.98 0.61 -2.21 16 2 C -0.10 -1.60 4.71 30.59 0.14 -1.45 16 3 C 0.11 2.41 1.49 44.91 0.07 2.48 16 4 H 0.03 0.89 7.29 -2.39 -0.02 0.87 16 5 N -0.66 -17.83 5.77 -469.28 -2.71 -20.54 16 6 C 0.11 3.43 1.33 44.95 0.06 3.49 16 7 C -0.13 -5.26 4.12 30.68 0.13 -5.13 16 8 C 0.12 5.75 4.15 86.37 0.36 6.11 16 9 N -0.62 -31.58 2.74 -699.09 -1.92 -33.49 16 10 C -0.25 -15.07 10.06 84.03 0.85 -14.22 16 11 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16 12 C -0.03 -2.14 5.35 84.86 0.45 -1.69 16 13 N -0.96 -63.55 13.97 21.65 0.30 -63.25 16 14 Si 0.96 50.20 24.24 68.60 1.66 51.86 16 15 H -0.28 -14.38 6.46 99.48 0.64 -13.74 16 16 H -0.31 -16.01 7.11 99.48 0.71 -15.30 16 17 H -0.26 -12.92 6.52 99.48 0.65 -12.28 16 18 C 0.14 5.92 6.52 86.36 0.56 6.48 16 19 C -0.11 -3.62 5.69 30.67 0.17 -3.44 16 20 C -0.10 -1.85 0.94 -52.40 -0.05 -1.90 16 21 C 0.47 11.43 6.42 71.24 0.46 11.89 16 22 O -0.53 -16.88 11.88 21.99 0.26 -16.62 16 23 O -0.35 -7.08 8.67 -51.43 -0.45 -7.52 16 24 C 0.03 0.50 10.56 113.37 1.20 1.69 16 25 C -0.11 -1.44 6.88 31.12 0.21 -1.22 16 26 C -0.13 -1.36 7.63 31.12 0.24 -1.12 16 27 C -0.11 -1.41 7.02 31.12 0.22 -1.20 16 28 H 0.04 0.78 7.75 -2.39 -0.02 0.76 16 29 H 0.05 1.15 6.76 -2.38 -0.02 1.13 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 1.18 6.38 -2.39 -0.02 1.17 16 32 H 0.09 0.94 5.97 -2.39 -0.01 0.93 16 33 H 0.33 10.06 5.92 -89.70 -0.53 9.53 16 34 H 0.08 2.57 5.48 -2.39 -0.01 2.55 16 35 H 0.04 1.65 8.11 -2.39 -0.02 1.63 16 36 H 0.06 2.39 6.43 -2.39 -0.02 2.38 16 37 H 0.04 2.14 4.43 -2.39 -0.01 2.13 16 38 H 0.03 1.36 6.87 -2.39 -0.02 1.35 16 39 H 0.26 16.39 8.31 -92.70 -0.77 15.62 16 40 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.06 2.36 7.93 -2.39 -0.02 2.34 16 42 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 43 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 44 H 0.05 1.05 8.13 -2.39 -0.02 1.03 16 45 H 0.05 1.04 8.13 -2.39 -0.02 1.02 16 46 H 0.13 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.12 1.24 5.74 -2.38 -0.01 1.23 16 48 H 0.06 0.99 8.10 -2.39 -0.02 0.97 16 49 H 0.08 1.03 6.86 -2.39 -0.02 1.01 16 50 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.07 0.91 8.09 -2.39 -0.02 0.89 16 52 H 0.12 1.04 5.96 -2.39 -0.01 1.03 16 Total: -1.00 -74.30 374.26 3.09 -71.21 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 0.26 Total: 19.80 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 5.68 Total: -1.45 kcal Atomic # 7 Polarization: -112.96 SS G_CDS: -4.32 Total: -117.28 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.18 Total: -24.14 kcal Atomic # 14 Polarization: 50.20 SS G_CDS: 1.66 Total: 51.86 kcal Total: -74.30 3.09 -71.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611522805.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.044 kcal (2) G-P(sol) polarization free energy of solvation -74.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds