Wall clock time and date at job start Tue Mar 31 2020 14:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47108 * 2 1 4 4 H 1.08995 * 109.47609 * 305.01995 * 3 2 1 5 5 C 1.53093 * 109.47567 * 184.99702 * 3 2 1 6 6 C 1.53179 * 109.16153 * 182.39485 * 5 3 2 7 7 H 1.09007 * 109.54266 * 297.11398 * 6 5 3 8 8 C 1.52996 * 109.54544 * 176.84822 * 6 5 3 9 9 C 1.50703 * 109.47409 * 174.99846 * 8 6 5 10 10 O 1.21292 * 119.99632 * 0.02562 * 9 8 6 11 11 N 1.34766 * 120.00377 * 180.02562 * 9 8 6 12 12 C 1.46506 * 120.00130 * 180.02562 * 11 9 8 13 13 C 1.53039 * 109.45758 * 275.02720 * 12 11 9 14 14 C 1.53197 * 109.30797 * 178.60096 * 13 12 11 15 15 N 1.46930 * 108.76505 * 54.65866 * 14 13 12 16 16 C 1.36935 * 120.63106 * 126.36618 * 15 14 13 17 17 H 1.07999 * 119.99809 * 331.85180 * 16 15 14 18 18 C 1.38804 * 120.00120 * 151.85974 * 16 15 14 19 19 N 1.31617 * 120.00403 * 343.06272 * 18 16 15 20 20 Si 1.86803 * 120.00215 * 163.06215 * 18 16 15 21 21 H 1.48495 * 109.47244 * 89.99786 * 20 18 16 22 22 H 1.48506 * 109.47353 * 209.99898 * 20 18 16 23 23 H 1.48507 * 109.47124 * 329.99816 * 20 18 16 24 24 C 1.46927 * 118.73740 * 306.38017 * 15 14 13 25 25 C 1.53045 * 109.45646 * 154.97239 * 12 11 9 26 26 C 1.53178 * 109.03581 * 56.97976 * 6 5 3 27 27 C 1.53092 * 109.16607 * 303.02221 * 26 6 5 28 28 O 1.42894 * 109.48870 * 65.05158 * 3 2 1 29 29 H 1.09005 * 109.46914 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47069 * 300.00426 * 1 2 3 31 31 H 1.08998 * 109.46771 * 60.00569 * 1 2 3 32 32 H 1.09002 * 109.47454 * 239.99198 * 2 1 3 33 33 H 1.09010 * 109.46609 * 119.99843 * 2 1 3 34 34 H 1.09007 * 109.52355 * 62.49276 * 5 3 2 35 35 H 1.08995 * 109.52522 * 302.30148 * 5 3 2 36 36 H 1.08991 * 109.47414 * 295.00142 * 8 6 5 37 37 H 1.09004 * 109.46899 * 55.00418 * 8 6 5 38 38 H 0.97003 * 119.99865 * 0.02562 * 11 9 8 39 39 H 1.08994 * 109.45830 * 35.00039 * 12 11 9 40 40 H 1.08994 * 109.50016 * 298.56137 * 13 12 11 41 41 H 1.08996 * 109.49831 * 58.66730 * 13 12 11 42 42 H 1.08995 * 109.59849 * 294.86849 * 14 13 12 43 43 H 1.08998 * 109.69988 * 174.50735 * 14 13 12 44 44 H 0.96997 * 120.00516 * 180.02562 * 19 18 16 45 45 H 1.09002 * 109.58732 * 293.82190 * 24 15 14 46 46 H 1.08998 * 109.70215 * 173.47098 * 24 15 14 47 47 H 1.08994 * 109.50127 * 301.33389 * 25 12 11 48 48 H 1.09002 * 109.49797 * 61.40846 * 25 12 11 49 49 H 1.08997 * 109.51821 * 62.92872 * 26 6 5 50 50 H 1.08999 * 109.52344 * 183.11755 * 26 6 5 51 51 H 1.09001 * 109.48047 * 297.62571 * 27 26 6 52 52 H 1.08996 * 109.48949 * 177.59599 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6052 1.9817 -0.8415 5 6 3.5658 1.4445 -0.1257 6 6 4.0735 2.8884 -0.0648 7 1 3.6793 3.4496 -0.9121 8 6 5.6027 2.8957 -0.1107 9 6 6.0967 4.3180 -0.1746 10 8 5.3035 5.2356 -0.1822 11 7 7.4196 4.5704 -0.2233 12 6 7.8998 5.9532 -0.2849 13 6 7.9039 6.4271 -1.7400 14 6 8.3731 7.8843 -1.7968 15 7 9.6758 7.9879 -1.1250 16 6 10.7483 8.5490 -1.7653 17 1 10.8170 8.5065 -2.8423 18 6 11.7473 9.1721 -1.0302 19 7 11.5242 9.5225 0.2187 20 14 13.4085 9.5136 -1.8134 21 1 13.3879 10.8532 -2.4537 22 1 14.4642 9.4801 -0.7695 23 1 13.6940 8.4788 -2.8396 24 6 9.8057 7.4778 0.2467 25 6 9.3200 6.0253 0.2807 26 6 3.5969 3.5308 1.2416 27 6 2.0700 3.4482 1.3146 28 8 1.6633 2.0814 1.2214 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5140 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 3.8535 0.9971 -1.0772 35 1 3.9996 0.8710 0.6934 36 1 5.9954 2.4146 0.7850 37 1 5.9423 2.3532 -0.9931 38 1 8.0539 3.8365 -0.2176 39 1 7.2417 6.5926 0.3035 40 1 8.5810 5.8037 -2.3238 41 1 6.8964 6.3534 -2.1495 42 1 7.6488 8.5217 -1.2898 43 1 8.4719 8.1983 -2.8359 44 1 12.2222 9.9582 0.7323 45 1 9.1982 8.0821 0.9204 46 1 10.8495 7.5216 0.5577 47 1 9.3207 5.6655 1.3096 48 1 9.9836 5.4052 -0.3221 49 1 4.0314 2.9995 2.0883 50 1 3.9068 4.5755 1.2680 51 1 1.6356 4.0137 0.4902 52 1 1.7281 3.8655 2.2616 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611614905.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:23 Heat of formation + Delta-G solvation = -93.276269 kcal Electronic energy + Delta-G solvation = -28230.240008 eV Core-core repulsion = 24421.915179 eV Total energy + Delta-G solvation = -3808.324829 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.31064 -39.28883 -37.40543 -34.91558 -34.31157 -34.21809 -32.18850 -30.32447 -30.03239 -29.71594 -28.58709 -25.22803 -24.34613 -23.62992 -22.31210 -22.01436 -21.26843 -20.38340 -19.97783 -19.21551 -17.18885 -16.69369 -16.51382 -16.13583 -15.77022 -15.50317 -14.86946 -14.78561 -14.50614 -14.06238 -13.92871 -13.81773 -13.56785 -13.42738 -13.19104 -12.98828 -12.90112 -12.58677 -12.33993 -12.06382 -12.02544 -11.74990 -11.47974 -11.39948 -11.29590 -11.13728 -11.05453 -10.88019 -10.72625 -10.68010 -10.50062 -10.40687 -10.29587 -10.04985 -9.87848 -9.75318 -9.62284 -9.33382 -8.70119 -8.47021 -6.69814 -5.81280 -3.23431 2.78664 3.34097 3.37612 3.42944 3.45074 3.57248 4.33557 4.46471 4.47939 4.57796 4.69341 4.83631 4.87432 5.02573 5.09214 5.11462 5.20886 5.26808 5.32525 5.35729 5.37334 5.41790 5.49332 5.56235 5.56890 5.60759 5.62940 5.69274 5.71922 5.81004 5.86301 5.88895 6.01687 6.05878 6.12737 6.19355 6.26474 6.34713 6.51485 6.54129 6.58481 6.78119 6.91634 6.97607 7.07353 7.29713 7.58001 7.72936 7.78546 8.41399 8.43116 9.19048 9.82312 10.39438 11.27704 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.042256 B = 0.002005 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.466144 B =13965.133447 C =14078.900727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C 0.091 3.909 4 H 0.056 0.944 5 C -0.146 4.146 6 C -0.072 4.072 7 H 0.079 0.921 8 C -0.137 4.137 9 C 0.509 3.491 10 O -0.541 6.541 11 N -0.726 5.726 12 C 0.151 3.849 13 C -0.138 4.138 14 C 0.147 3.853 15 N -0.592 5.592 16 C -0.252 4.252 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.902 3.098 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.174 3.826 25 C -0.147 4.147 26 C -0.155 4.155 27 C 0.064 3.936 28 O -0.381 6.381 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.395 0.605 39 H 0.081 0.919 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.020 0.980 43 H 0.056 0.944 44 H 0.254 0.746 45 H 0.020 0.980 46 H 0.091 0.909 47 H 0.053 0.947 48 H 0.059 0.941 49 H 0.064 0.936 50 H 0.095 0.905 51 H 0.049 0.951 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.596 -19.760 0.891 25.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C 0.033 3.967 4 H 0.074 0.926 5 C -0.184 4.184 6 C -0.091 4.091 7 H 0.097 0.903 8 C -0.177 4.177 9 C 0.295 3.705 10 O -0.419 6.419 11 N -0.376 5.376 12 C 0.047 3.953 13 C -0.178 4.178 14 C 0.020 3.980 15 N -0.315 5.315 16 C -0.382 4.382 17 H 0.083 0.917 18 C -0.197 4.197 19 N -0.548 5.548 20 Si 0.732 3.268 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.048 3.952 25 C -0.186 4.186 26 C -0.193 4.193 27 C -0.013 4.013 28 O -0.300 6.300 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.228 0.772 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.038 0.962 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.039 0.961 46 H 0.110 0.890 47 H 0.072 0.928 48 H 0.078 0.922 49 H 0.082 0.918 50 H 0.113 0.887 51 H 0.068 0.932 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.140 -19.083 1.142 25.676 hybrid contribution 1.505 -0.001 -0.553 1.603 sum -15.635 -19.084 0.589 24.678 Atomic orbital electron populations 1.21721 0.95318 1.01401 1.02309 1.21552 0.96685 0.94508 1.02605 1.22102 0.93374 0.93864 0.87357 0.92558 1.22304 0.96358 0.96977 1.02740 1.20921 0.93272 0.95540 0.99338 0.90256 1.21741 0.97056 0.94733 1.04155 1.20612 0.82585 0.91290 0.76023 1.90662 1.54667 1.46824 1.49709 1.46398 1.06788 1.09812 1.74555 1.21024 0.95978 0.80954 0.97310 1.22360 0.99985 0.99865 0.95619 1.20873 0.88191 0.91962 0.96937 1.44082 1.05637 1.68661 1.13141 1.19171 0.98121 1.29500 0.91397 0.91695 1.25053 0.99968 0.97942 0.96712 1.70021 1.32596 1.42788 1.09357 0.86306 0.84008 0.78175 0.78334 1.21369 1.21556 1.20519 1.20735 1.01706 0.86810 0.85983 1.22531 0.94215 1.02789 0.99106 1.22361 0.96224 1.03659 0.97042 1.22558 0.94240 0.82544 1.01955 1.87894 1.78732 1.25061 1.38355 0.92881 0.91919 0.92975 0.90754 0.91171 0.90950 0.90963 0.89087 0.89056 0.77178 0.90129 0.92424 0.92827 0.96234 0.92596 0.93592 0.96148 0.89050 0.92815 0.92232 0.91751 0.88688 0.93232 0.89011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.81 37.16 0.36 -0.67 16 2 C -0.12 -0.81 5.64 -26.73 -0.15 -0.96 16 3 C 0.09 0.77 2.64 -26.68 -0.07 0.70 16 4 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 5 C -0.15 -1.15 4.70 -26.59 -0.13 -1.28 16 6 C -0.07 -0.70 1.91 -90.44 -0.17 -0.87 16 7 H 0.08 0.89 7.95 -51.93 -0.41 0.48 16 8 C -0.14 -1.27 5.18 -27.88 -0.14 -1.41 16 9 C 0.51 6.81 7.53 -10.99 -0.08 6.73 16 10 O -0.54 -9.22 13.67 5.55 0.08 -9.15 16 11 N -0.73 -9.69 5.08 -53.76 -0.27 -9.96 16 12 C 0.15 2.57 2.42 -67.88 -0.16 2.41 16 13 C -0.14 -2.51 5.65 -26.61 -0.15 -2.66 16 14 C 0.15 3.17 6.52 -3.71 -0.02 3.15 16 15 N -0.59 -14.76 2.99 -172.32 -0.52 -15.27 16 16 C -0.25 -6.87 9.58 -15.06 -0.14 -7.02 16 17 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 18 C 0.00 0.05 4.92 -17.43 -0.09 -0.04 16 19 N -0.90 -25.99 11.19 55.49 0.62 -25.37 16 20 Si 0.90 21.45 29.59 -169.99 -5.03 16.42 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 C 0.17 4.07 5.30 -3.71 -0.02 4.05 16 25 C -0.15 -2.65 5.55 -26.61 -0.15 -2.80 16 26 C -0.16 -1.65 5.13 -26.59 -0.14 -1.78 16 27 C 0.06 0.63 6.84 37.20 0.25 0.89 16 28 O -0.38 -3.99 9.94 -35.23 -0.35 -4.34 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.50 7.83 -51.93 -0.41 0.09 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.51 8.14 -51.92 -0.42 0.08 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.39 4.19 8.60 -40.82 -0.35 3.84 16 39 H 0.08 1.56 7.58 -51.93 -0.39 1.17 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.06 1.18 7.93 -51.93 -0.41 0.76 16 44 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 45 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.09 2.37 6.06 -51.93 -0.31 2.06 16 47 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.09 1.23 6.07 -51.93 -0.32 0.91 16 51 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 52 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 397.89 15.07 6.00 6.00 Total: -1.00 -30.96 397.89 -10.24 -41.20 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -9.76 Total: 2.03 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -1.00 Total: -1.55 kcal Atomic # 7 Polarization: -50.43 SS G_CDS: -0.17 Total: -50.60 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.27 Total: -13.49 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.96 -10.24 -41.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611614905.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.079 kcal (2) G-P(sol) polarization free energy of solvation -30.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds