Wall clock time and date at job start Tue Mar 31 2020 14:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47108 * 2 1 4 4 H 1.08995 * 109.47609 * 305.01995 * 3 2 1 5 5 C 1.53093 * 109.47567 * 184.99702 * 3 2 1 6 6 C 1.53179 * 109.16153 * 182.39485 * 5 3 2 7 7 H 1.09007 * 109.54266 * 297.11398 * 6 5 3 8 8 C 1.52996 * 109.54544 * 176.84822 * 6 5 3 9 9 C 1.50703 * 109.47409 * 174.99846 * 8 6 5 10 10 O 1.21292 * 119.99632 * 0.02562 * 9 8 6 11 11 N 1.34766 * 120.00377 * 180.02562 * 9 8 6 12 12 C 1.46506 * 120.00130 * 180.02562 * 11 9 8 13 13 C 1.53039 * 109.45758 * 275.02720 * 12 11 9 14 14 C 1.53197 * 109.30797 * 178.60096 * 13 12 11 15 15 N 1.46930 * 108.76505 * 54.65866 * 14 13 12 16 16 C 1.36935 * 120.63106 * 126.36618 * 15 14 13 17 17 H 1.07999 * 119.99809 * 331.85180 * 16 15 14 18 18 C 1.38804 * 120.00120 * 151.85974 * 16 15 14 19 19 N 1.31617 * 120.00403 * 343.06272 * 18 16 15 20 20 Si 1.86803 * 120.00215 * 163.06215 * 18 16 15 21 21 H 1.48495 * 109.47244 * 89.99786 * 20 18 16 22 22 H 1.48506 * 109.47353 * 209.99898 * 20 18 16 23 23 H 1.48507 * 109.47124 * 329.99816 * 20 18 16 24 24 C 1.46927 * 118.73740 * 306.38017 * 15 14 13 25 25 C 1.53045 * 109.45646 * 154.97239 * 12 11 9 26 26 C 1.53178 * 109.03581 * 56.97976 * 6 5 3 27 27 C 1.53092 * 109.16607 * 303.02221 * 26 6 5 28 28 O 1.42894 * 109.48870 * 65.05158 * 3 2 1 29 29 H 1.09005 * 109.46914 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47069 * 300.00426 * 1 2 3 31 31 H 1.08998 * 109.46771 * 60.00569 * 1 2 3 32 32 H 1.09002 * 109.47454 * 239.99198 * 2 1 3 33 33 H 1.09010 * 109.46609 * 119.99843 * 2 1 3 34 34 H 1.09007 * 109.52355 * 62.49276 * 5 3 2 35 35 H 1.08995 * 109.52522 * 302.30148 * 5 3 2 36 36 H 1.08991 * 109.47414 * 295.00142 * 8 6 5 37 37 H 1.09004 * 109.46899 * 55.00418 * 8 6 5 38 38 H 0.97003 * 119.99865 * 0.02562 * 11 9 8 39 39 H 1.08994 * 109.45830 * 35.00039 * 12 11 9 40 40 H 1.08994 * 109.50016 * 298.56137 * 13 12 11 41 41 H 1.08996 * 109.49831 * 58.66730 * 13 12 11 42 42 H 1.08995 * 109.59849 * 294.86849 * 14 13 12 43 43 H 1.08998 * 109.69988 * 174.50735 * 14 13 12 44 44 H 0.96997 * 120.00516 * 180.02562 * 19 18 16 45 45 H 1.09002 * 109.58732 * 293.82190 * 24 15 14 46 46 H 1.08998 * 109.70215 * 173.47098 * 24 15 14 47 47 H 1.08994 * 109.50127 * 301.33389 * 25 12 11 48 48 H 1.09002 * 109.49797 * 61.40846 * 25 12 11 49 49 H 1.08997 * 109.51821 * 62.92872 * 26 6 5 50 50 H 1.08999 * 109.52344 * 183.11755 * 26 6 5 51 51 H 1.09001 * 109.48047 * 297.62571 * 27 26 6 52 52 H 1.08996 * 109.48949 * 177.59599 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6052 1.9817 -0.8415 5 6 3.5658 1.4445 -0.1257 6 6 4.0735 2.8884 -0.0648 7 1 3.6793 3.4496 -0.9121 8 6 5.6027 2.8957 -0.1107 9 6 6.0967 4.3180 -0.1746 10 8 5.3035 5.2356 -0.1822 11 7 7.4196 4.5704 -0.2233 12 6 7.8998 5.9532 -0.2849 13 6 7.9039 6.4271 -1.7400 14 6 8.3731 7.8843 -1.7968 15 7 9.6758 7.9879 -1.1250 16 6 10.7483 8.5490 -1.7653 17 1 10.8170 8.5065 -2.8423 18 6 11.7473 9.1721 -1.0302 19 7 11.5242 9.5225 0.2187 20 14 13.4085 9.5136 -1.8134 21 1 13.3879 10.8532 -2.4537 22 1 14.4642 9.4801 -0.7695 23 1 13.6940 8.4788 -2.8396 24 6 9.8057 7.4778 0.2467 25 6 9.3200 6.0253 0.2807 26 6 3.5969 3.5308 1.2416 27 6 2.0700 3.4482 1.3146 28 8 1.6633 2.0814 1.2214 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8900 32 1 1.8934 -0.5140 -0.8899 33 1 1.8933 -0.5139 0.8901 34 1 3.8535 0.9971 -1.0772 35 1 3.9996 0.8710 0.6934 36 1 5.9954 2.4146 0.7850 37 1 5.9423 2.3532 -0.9931 38 1 8.0539 3.8365 -0.2176 39 1 7.2417 6.5926 0.3035 40 1 8.5810 5.8037 -2.3238 41 1 6.8964 6.3534 -2.1495 42 1 7.6488 8.5217 -1.2898 43 1 8.4719 8.1983 -2.8359 44 1 12.2222 9.9582 0.7323 45 1 9.1982 8.0821 0.9204 46 1 10.8495 7.5216 0.5577 47 1 9.3207 5.6655 1.3096 48 1 9.9836 5.4052 -0.3221 49 1 4.0314 2.9995 2.0883 50 1 3.9068 4.5755 1.2680 51 1 1.6356 4.0137 0.4902 52 1 1.7281 3.8655 2.2616 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611614905.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:21 Heat of formation + Delta-G solvation = -111.789215 kcal Electronic energy + Delta-G solvation = -28231.042790 eV Core-core repulsion = 24421.915179 eV Total energy + Delta-G solvation = -3809.127611 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.27610 -40.26143 -38.94178 -36.12357 -35.46881 -34.84450 -33.93635 -31.90741 -31.37021 -30.71476 -29.62243 -26.92628 -25.24466 -24.46724 -23.94134 -23.51555 -22.04715 -21.35873 -21.08050 -20.63143 -18.86884 -17.84053 -17.34879 -17.21799 -16.83792 -16.66300 -16.43471 -15.78592 -15.52192 -15.39891 -15.27782 -14.97395 -14.81537 -14.53026 -14.31235 -14.18008 -13.99567 -13.96235 -13.54058 -13.18987 -13.01904 -12.78752 -12.66098 -12.60688 -12.52795 -12.45917 -12.22960 -12.04256 -12.02001 -11.95769 -11.87911 -11.70987 -11.56163 -11.41786 -11.34388 -11.14464 -10.70846 -10.57056 -10.30056 -9.93138 -8.72087 -7.89197 -5.35069 1.47536 1.48596 1.58738 1.74618 2.26904 2.50942 2.88370 3.26856 3.61407 3.67046 3.70219 3.81940 3.89440 4.03608 4.03853 4.14110 4.24987 4.30046 4.32769 4.42154 4.44674 4.46131 4.54378 4.58000 4.63386 4.71572 4.77410 4.80966 4.83752 4.85832 4.92602 4.98956 5.03893 5.04402 5.07138 5.13768 5.14379 5.19318 5.24564 5.27769 5.31653 5.45538 5.45644 5.48151 5.61870 5.63303 5.69641 6.35313 6.37433 6.68924 7.12983 7.38721 7.82435 8.35511 9.17935 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.042256 B = 0.002005 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.466144 B =13965.133447 C =14078.900727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C 0.082 3.918 4 H 0.051 0.949 5 C -0.137 4.137 6 C -0.071 4.071 7 H 0.060 0.940 8 C -0.126 4.126 9 C 0.505 3.495 10 O -0.582 6.582 11 N -0.715 5.715 12 C 0.163 3.837 13 C -0.122 4.122 14 C 0.144 3.856 15 N -0.608 5.608 16 C -0.264 4.264 17 H 0.067 0.933 18 C -0.050 4.050 19 N -0.936 5.936 20 Si 0.970 3.030 21 H -0.287 1.287 22 H -0.291 1.291 23 H -0.268 1.268 24 C 0.178 3.822 25 C -0.128 4.128 26 C -0.152 4.152 27 C 0.064 3.936 28 O -0.394 6.394 29 H 0.064 0.936 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.094 0.906 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.079 0.921 36 H 0.115 0.885 37 H 0.121 0.879 38 H 0.413 0.587 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.005 0.995 43 H 0.057 0.943 44 H 0.251 0.749 45 H -0.008 1.008 46 H 0.063 0.937 47 H 0.075 0.925 48 H 0.070 0.930 49 H 0.068 0.932 50 H 0.067 0.933 51 H 0.043 0.957 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.280 -22.911 -0.083 28.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.150 4.150 3 C 0.025 3.975 4 H 0.069 0.931 5 C -0.175 4.175 6 C -0.090 4.090 7 H 0.079 0.921 8 C -0.165 4.165 9 C 0.293 3.707 10 O -0.462 6.462 11 N -0.366 5.366 12 C 0.058 3.942 13 C -0.162 4.162 14 C 0.018 3.982 15 N -0.332 5.332 16 C -0.394 4.394 17 H 0.085 0.915 18 C -0.246 4.246 19 N -0.582 5.582 20 Si 0.797 3.203 21 H -0.214 1.214 22 H -0.217 1.217 23 H -0.193 1.193 24 C 0.051 3.949 25 C -0.168 4.168 26 C -0.190 4.190 27 C -0.013 4.013 28 O -0.313 6.313 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.112 0.888 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.098 0.902 36 H 0.133 0.867 37 H 0.139 0.861 38 H 0.250 0.750 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.023 0.977 43 H 0.075 0.925 44 H 0.060 0.940 45 H 0.010 0.990 46 H 0.081 0.919 47 H 0.094 0.906 48 H 0.089 0.911 49 H 0.087 0.913 50 H 0.086 0.914 51 H 0.062 0.938 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.834 -22.285 0.154 27.929 hybrid contribution 1.303 1.036 -0.250 1.684 sum -15.531 -21.249 -0.096 26.320 Atomic orbital electron populations 1.21717 0.95533 1.01955 1.01558 1.21574 0.96513 0.93461 1.03498 1.22306 0.94156 0.94573 0.86459 0.93055 1.22250 0.95529 0.95516 1.04180 1.20903 0.93749 0.96556 0.97839 0.92134 1.21758 0.96384 0.91741 1.06616 1.21403 0.81895 0.92754 0.74603 1.90666 1.55634 1.48569 1.51303 1.46132 1.07466 1.08523 1.74511 1.20576 0.94798 0.82905 0.95963 1.22146 1.00143 0.97331 0.96582 1.20970 0.86631 0.94245 0.96402 1.44338 1.06345 1.68949 1.13579 1.19508 0.98942 1.29230 0.91763 0.91507 1.25831 1.03273 0.98180 0.97271 1.70183 1.33388 1.43880 1.10724 0.85255 0.79568 0.77989 0.77470 1.21361 1.21729 1.19319 1.20566 0.99645 0.89774 0.84870 1.22245 0.94726 0.98938 1.00872 1.22279 0.96569 1.02108 0.98006 1.22531 0.93986 0.82682 1.02054 1.87885 1.79017 1.24982 1.39460 0.91679 0.93512 0.92903 0.88788 0.91238 0.88835 0.90206 0.86727 0.86135 0.75009 0.92814 0.91516 0.92301 0.97749 0.92485 0.94000 0.98972 0.91885 0.90616 0.91115 0.91288 0.91423 0.93837 0.88532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.81 71.98 0.71 -1.14 16 2 C -0.11 -1.32 5.64 30.60 0.17 -1.15 16 3 C 0.08 1.26 2.64 30.63 0.08 1.34 16 4 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 5 C -0.14 -1.74 4.70 30.68 0.14 -1.60 16 6 C -0.07 -1.25 1.91 -10.68 -0.02 -1.27 16 7 H 0.06 1.30 7.95 -2.38 -0.02 1.28 16 8 C -0.13 -1.89 5.18 29.85 0.15 -1.74 16 9 C 0.51 12.55 7.53 87.66 0.66 13.21 16 10 O -0.58 -19.72 13.67 -3.07 -0.04 -19.76 16 11 N -0.72 -17.31 5.08 -442.39 -2.25 -19.55 16 12 C 0.16 5.40 2.42 45.02 0.11 5.51 16 13 C -0.12 -4.30 5.65 30.67 0.17 -4.13 16 14 C 0.14 6.26 6.52 86.36 0.56 6.82 16 15 N -0.61 -30.80 2.99 -699.09 -2.09 -32.89 16 16 C -0.26 -14.53 9.58 84.03 0.81 -13.72 16 17 H 0.07 3.57 7.88 -2.91 -0.02 3.55 16 18 C -0.05 -2.79 4.92 84.86 0.42 -2.37 16 19 N -0.94 -55.24 11.19 21.65 0.24 -54.99 16 20 Si 0.97 44.38 29.59 68.60 2.03 46.41 16 21 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 22 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 24 C 0.18 8.50 5.30 86.36 0.46 8.95 16 25 C -0.13 -4.49 5.55 30.67 0.17 -4.32 16 26 C -0.15 -3.13 5.13 30.68 0.16 -2.97 16 27 C 0.06 1.27 6.84 72.01 0.49 1.76 16 28 O -0.39 -7.90 9.94 -148.98 -1.48 -9.38 16 29 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.05 0.72 7.83 -2.39 -0.02 0.70 16 31 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 34 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.12 1.21 8.14 -2.38 -0.02 1.19 16 38 H 0.41 7.18 8.60 -92.71 -0.80 6.38 16 39 H 0.05 2.11 7.58 -2.39 -0.02 2.09 16 40 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 43 H 0.06 2.42 7.93 -2.39 -0.02 2.40 16 44 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 45 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 46 H 0.06 3.36 6.06 -2.39 -0.01 3.35 16 47 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 48 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 49 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 50 H 0.07 1.79 6.07 -2.39 -0.01 1.77 16 51 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 52 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -69.26 397.89 1.73 -67.53 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 0.08 Total: 19.45 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: 5.24 Total: 3.18 kcal Atomic # 7 Polarization: -103.34 SS G_CDS: -4.10 Total: -107.44 kcal Atomic # 8 Polarization: -27.61 SS G_CDS: -1.52 Total: -29.14 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -69.26 1.73 -67.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611614905.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.256 kcal (2) G-P(sol) polarization free energy of solvation -69.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds