Wall clock time and date at job start Tue Mar 31 2020 15:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46984 * 2 1 4 4 H 1.08992 * 109.46996 * 55.00219 * 3 2 1 5 5 N 1.46496 * 109.47229 * 294.99647 * 3 2 1 6 6 C 1.34777 * 119.99835 * 85.00325 * 5 3 2 7 7 O 1.21592 * 120.00031 * 359.97438 * 6 5 3 8 8 N 1.34778 * 119.99896 * 180.02562 * 6 5 3 9 9 C 1.46503 * 119.99894 * 180.02562 * 8 6 5 10 10 H 1.09003 * 110.01830 * 325.06338 * 9 8 6 11 11 C 1.54266 * 110.03172 * 86.45201 * 9 8 6 12 12 C 1.54887 * 104.19888 * 95.67328 * 11 9 8 13 13 C 1.54893 * 102.74533 * 37.94403 * 12 11 9 14 14 H 1.09001 * 110.49013 * 80.73631 * 13 12 11 15 15 C 1.50700 * 110.59699 * 203.32375 * 13 12 11 16 16 H 1.08003 * 120.00028 * 114.83683 * 15 13 12 17 17 C 1.37871 * 120.00181 * 294.84048 * 15 13 12 18 18 N 1.31517 * 120.00096 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 120.00196 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46864 * 89.99855 * 19 17 15 21 21 H 1.48498 * 109.47105 * 209.99707 * 19 17 15 22 22 H 1.48495 * 109.46881 * 330.00091 * 19 17 15 23 23 C 1.53872 * 110.03419 * 203.61680 * 9 8 6 24 24 C 1.53000 * 109.46590 * 175.00234 * 3 2 1 25 25 H 1.09006 * 109.52129 * 304.86692 * 24 3 2 26 26 C 1.53184 * 109.52148 * 184.69010 * 24 3 2 27 27 C 1.53170 * 109.03742 * 183.11242 * 26 24 3 28 28 C 1.53095 * 109.16690 * 56.97595 * 27 26 24 29 29 O 1.42901 * 109.41400 * 302.39244 * 28 27 26 30 30 C 1.42909 * 114.09763 * 61.15280 * 29 28 27 31 31 H 1.09000 * 109.47598 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47610 * 300.00094 * 1 2 3 33 33 H 1.09009 * 109.46861 * 59.99981 * 1 2 3 34 34 H 1.09004 * 109.46963 * 239.99613 * 2 1 3 35 35 H 1.08996 * 109.46643 * 120.00128 * 2 1 3 36 36 H 0.97001 * 120.00172 * 265.00617 * 5 3 2 37 37 H 0.96999 * 120.00275 * 359.97438 * 8 6 5 38 38 H 1.09001 * 110.48620 * 214.35535 * 11 9 8 39 39 H 1.09004 * 110.48798 * 336.99369 * 11 9 8 40 40 H 1.09001 * 110.75744 * 156.25305 * 12 11 9 41 41 H 1.09000 * 110.75698 * 279.63123 * 12 11 9 42 42 H 0.96998 * 119.99977 * 180.02562 * 18 17 15 43 43 H 1.09002 * 110.03208 * 359.97438 * 23 9 8 44 44 H 1.08996 * 110.03362 * 121.42732 * 23 9 8 45 45 H 1.09006 * 109.53726 * 302.97354 * 26 24 3 46 46 H 1.08996 * 109.54647 * 63.23442 * 26 24 3 47 47 H 1.09005 * 109.52305 * 297.06915 * 27 26 24 48 48 H 1.09006 * 109.52408 * 176.87981 * 27 26 24 49 49 H 1.08994 * 109.48229 * 182.41126 * 28 27 26 50 50 H 1.09003 * 109.47865 * 62.37161 * 28 27 26 51 51 H 1.08997 * 109.47977 * 178.85843 * 30 29 28 52 52 H 1.08999 * 109.47671 * 58.83234 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6525 2.0975 -1.2518 6 6 0.4352 2.6644 -1.3670 7 8 -0.3416 2.6318 -0.4320 8 7 0.0785 3.2665 -2.5188 9 6 -1.2445 3.8833 -2.6438 10 1 -1.9805 3.3039 -2.0862 11 6 -1.2038 5.3326 -2.1170 12 6 -0.9817 6.1921 -3.3863 13 6 -1.8413 5.4620 -4.4480 14 1 -2.8899 5.7425 -4.3486 15 6 -1.3435 5.7705 -5.8366 16 1 -0.9258 4.9840 -6.4477 17 6 -1.4213 7.0567 -6.3269 18 7 -1.9304 8.0144 -5.5831 19 14 -0.8036 7.4392 -8.0479 20 1 -1.9118 7.2664 -9.0213 21 1 -0.3146 8.8405 -8.0982 22 1 0.3064 6.5149 -8.3922 23 6 -1.6499 3.9655 -4.1259 24 6 3.5648 1.4442 0.1257 25 1 3.8578 0.8820 1.0124 26 6 4.0671 2.8866 0.2435 27 6 5.5980 2.8802 0.2903 28 6 6.1362 2.1778 -0.9591 29 8 5.6064 0.8523 -1.0241 30 6 4.1814 0.7973 -1.1172 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8901 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5138 0.8900 36 1 2.2720 2.1231 -1.9978 37 1 0.6980 3.2922 -3.2648 38 1 -2.1494 5.5923 -1.6411 39 1 -0.3763 5.4619 -1.4193 40 1 -1.3410 7.2095 -3.2316 41 1 0.0697 6.1919 -3.6739 42 1 -1.9855 8.9192 -5.9282 43 1 -0.8620 3.5470 -4.7522 44 1 -2.5830 3.4263 -4.2883 45 1 3.7310 3.4613 -0.6196 46 1 3.6761 3.3354 1.1566 47 1 5.9331 2.3476 1.1804 48 1 5.9659 3.9060 0.3184 49 1 7.2241 2.1325 -0.9104 50 1 5.8346 2.7337 -1.8469 51 1 3.8612 -0.2425 -1.1826 52 1 3.8543 1.3351 -2.0071 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883673671.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:37 Heat of formation + Delta-G solvation = -105.335182 kcal Electronic energy + Delta-G solvation = -29101.345522 eV Core-core repulsion = 25292.497779 eV Total energy + Delta-G solvation = -3808.847743 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.61313 -39.39612 -37.51725 -36.09892 -33.59899 -33.50845 -32.47085 -31.41496 -31.13775 -28.14460 -27.14294 -26.12684 -25.42776 -23.82795 -23.12706 -21.59490 -20.87828 -19.87922 -19.38337 -19.30354 -18.07084 -16.83049 -16.49025 -16.34537 -15.85342 -15.66974 -14.95906 -14.81898 -14.69590 -14.52133 -14.13684 -14.08376 -13.70235 -13.40344 -13.20893 -12.95340 -12.77601 -12.46025 -12.29162 -11.88890 -11.69522 -11.65699 -11.44225 -11.39558 -11.02011 -10.98921 -10.90664 -10.83505 -10.65175 -10.58922 -10.53091 -10.38187 -9.94195 -9.74171 -9.72932 -9.56510 -9.21455 -8.97601 -8.81548 -8.44017 -8.34002 -6.02309 -4.05467 2.92967 3.28223 3.35572 3.37327 3.48487 3.54774 4.30462 4.37349 4.41393 4.45462 4.52276 4.61885 4.80427 4.90299 5.01109 5.06178 5.18199 5.29528 5.29789 5.37561 5.41105 5.51936 5.57214 5.60427 5.66048 5.70530 5.73283 5.76396 5.86220 5.90130 5.97187 5.99903 6.14926 6.35132 6.37127 6.50507 6.58762 6.62872 6.67655 6.77588 6.85498 6.94462 6.98860 7.14994 7.28956 7.40742 7.69836 7.85777 8.01647 8.29977 8.42273 8.90745 8.97261 9.58582 11.07090 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.013556 B = 0.003009 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.054075 B = 9302.462724 C =10457.613546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.172 3.828 4 H 0.091 0.909 5 N -0.747 5.747 6 C 0.702 3.298 7 O -0.590 6.590 8 N -0.731 5.731 9 C 0.160 3.840 10 H 0.074 0.926 11 C -0.136 4.136 12 C -0.098 4.098 13 C 0.048 3.952 14 H 0.032 0.968 15 C -0.514 4.514 16 H 0.054 0.946 17 C 0.063 3.937 18 N -0.888 5.888 19 Si 0.888 3.112 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.275 1.275 23 C -0.122 4.122 24 C -0.129 4.129 25 H 0.092 0.908 26 C -0.118 4.118 27 C -0.156 4.156 28 C 0.057 3.943 29 O -0.381 6.381 30 C 0.064 3.936 31 H 0.040 0.960 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.391 0.609 37 H 0.393 0.607 38 H 0.059 0.941 39 H 0.049 0.951 40 H 0.065 0.935 41 H 0.045 0.955 42 H 0.259 0.741 43 H 0.060 0.940 44 H 0.053 0.947 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.070 0.930 48 H 0.074 0.926 49 H 0.092 0.908 50 H 0.051 0.949 51 H 0.098 0.902 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.577 -13.612 11.479 22.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.066 3.934 4 H 0.109 0.891 5 N -0.405 5.405 6 C 0.402 3.598 7 O -0.468 6.468 8 N -0.385 5.385 9 C 0.055 3.945 10 H 0.092 0.908 11 C -0.175 4.175 12 C -0.137 4.137 13 C 0.029 3.971 14 H 0.051 0.949 15 C -0.552 4.552 16 H 0.072 0.928 17 C -0.139 4.139 18 N -0.526 5.526 19 Si 0.716 3.284 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.161 4.161 24 C -0.148 4.148 25 H 0.111 0.889 26 C -0.156 4.156 27 C -0.193 4.193 28 C -0.019 4.019 29 O -0.300 6.300 30 C -0.013 4.013 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.226 0.774 37 H 0.227 0.773 38 H 0.078 0.922 39 H 0.068 0.932 40 H 0.084 0.916 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.092 0.908 49 H 0.111 0.889 50 H 0.070 0.930 51 H 0.116 0.884 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 12.901 -13.597 12.341 22.441 hybrid contribution 0.769 0.679 -1.654 1.946 sum 13.669 -12.918 10.687 21.632 Atomic orbital electron populations 1.21773 0.94495 1.00109 1.03601 1.22018 0.97547 0.96055 1.01776 1.20774 0.92154 0.93116 0.87340 0.89065 1.45322 1.16295 1.62001 1.16884 1.15985 0.81925 0.78192 0.83700 1.90901 1.51710 1.65369 1.38856 1.45520 1.18848 1.59897 1.14267 1.21606 0.81789 0.93326 0.97744 0.90752 1.22847 1.00403 0.95257 0.98946 1.22438 0.99571 0.98962 0.92695 1.19462 0.96116 0.87451 0.94034 0.94949 1.21165 1.40797 0.93989 0.99272 0.92774 1.24981 0.95219 0.96551 0.97170 1.69961 1.45094 1.01163 1.36413 0.86664 0.79091 0.77503 0.85112 1.20747 1.21326 1.20023 1.22608 0.99904 1.01345 0.92196 1.22123 0.94575 0.97696 1.00435 0.88935 1.21640 0.94930 0.95825 1.03182 1.22196 0.96328 1.01451 0.99362 1.22613 0.98796 0.83652 0.96864 1.87948 1.20422 1.27106 1.94521 1.22682 0.80834 1.01713 0.96056 0.94082 0.92216 0.91970 0.92018 0.91437 0.77449 0.77298 0.92183 0.93239 0.91628 0.93653 0.93084 0.92128 0.92850 0.91293 0.91162 0.91094 0.90762 0.88947 0.93026 0.88426 0.93260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 8.51 37.16 0.32 -1.39 16 2 C -0.14 -1.26 5.24 -26.73 -0.14 -1.40 16 3 C 0.17 1.68 1.95 -67.93 -0.13 1.54 16 4 H 0.09 1.09 7.58 -51.93 -0.39 0.69 16 5 N -0.75 -8.13 4.34 -58.68 -0.25 -8.39 16 6 C 0.70 10.44 7.12 -86.92 -0.62 9.82 16 7 O -0.59 -10.69 13.15 5.28 0.07 -10.62 16 8 N -0.73 -11.10 5.05 -57.58 -0.29 -11.39 16 9 C 0.16 2.86 3.23 -66.81 -0.22 2.64 16 10 H 0.07 1.38 7.60 -51.93 -0.39 0.98 16 11 C -0.14 -2.63 6.53 -25.07 -0.16 -2.79 16 12 C -0.10 -2.22 5.75 -24.74 -0.14 -2.37 16 13 C 0.05 1.14 2.71 -90.11 -0.24 0.90 16 14 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 15 C -0.51 -13.55 8.47 -34.44 -0.29 -13.84 16 16 H 0.05 1.40 7.54 -52.48 -0.40 1.00 16 17 C 0.06 1.69 5.35 -17.82 -0.10 1.60 16 18 N -0.89 -25.08 12.29 55.43 0.68 -24.40 16 19 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 C -0.12 -2.38 6.13 -25.61 -0.16 -2.54 16 24 C -0.13 -1.02 2.20 -90.48 -0.20 -1.22 16 25 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 26 C -0.12 -0.98 5.23 -26.55 -0.14 -1.11 16 27 C -0.16 -1.12 6.14 -26.59 -0.16 -1.29 16 28 C 0.06 0.44 6.84 37.21 0.25 0.69 16 29 O -0.38 -3.60 10.77 -35.23 -0.38 -3.98 16 30 C 0.06 0.51 5.63 37.20 0.21 0.72 16 31 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.79 7.84 -51.93 -0.41 0.39 16 33 H 0.06 0.89 5.64 -51.92 -0.29 0.60 16 34 H 0.06 0.53 6.88 -51.93 -0.36 0.17 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.39 3.54 6.56 -40.82 -0.27 3.27 16 37 H 0.39 5.33 8.31 -40.82 -0.34 4.99 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.05 0.95 8.04 -51.93 -0.42 0.53 16 40 H 0.06 1.64 7.56 -51.93 -0.39 1.24 16 41 H 0.04 1.04 8.05 -51.93 -0.42 0.62 16 42 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 43 H 0.06 1.14 7.12 -51.93 -0.37 0.77 16 44 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.07 0.63 7.67 -51.93 -0.40 0.23 16 46 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.10 0.71 6.81 -51.93 -0.35 0.36 16 52 H 0.05 0.37 6.20 -51.93 -0.32 0.05 16 LS Contribution 390.79 15.07 5.89 5.89 Total: -1.00 -29.84 390.79 -10.53 -40.38 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -9.31 Total: 6.78 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: -1.92 Total: -10.03 kcal Atomic # 7 Polarization: -44.32 SS G_CDS: 0.14 Total: -44.18 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.31 Total: -14.60 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.84 -10.53 -40.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883673671.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.958 kcal (2) G-P(sol) polarization free energy of solvation -29.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds