Wall clock time and date at job start Tue Mar 31 2020 15:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.46984 * 2 1 4 4 H 1.08992 * 109.46996 * 55.00219 * 3 2 1 5 5 N 1.46496 * 109.47229 * 294.99647 * 3 2 1 6 6 C 1.34777 * 119.99835 * 85.00325 * 5 3 2 7 7 O 1.21592 * 120.00031 * 359.97438 * 6 5 3 8 8 N 1.34778 * 119.99896 * 180.02562 * 6 5 3 9 9 C 1.46503 * 119.99894 * 180.02562 * 8 6 5 10 10 H 1.09003 * 110.01830 * 325.06338 * 9 8 6 11 11 C 1.54266 * 110.03172 * 86.45201 * 9 8 6 12 12 C 1.54887 * 104.19888 * 95.67328 * 11 9 8 13 13 C 1.54893 * 102.74533 * 37.94403 * 12 11 9 14 14 H 1.09001 * 110.49013 * 80.73631 * 13 12 11 15 15 C 1.50700 * 110.59699 * 203.32375 * 13 12 11 16 16 H 1.08003 * 120.00028 * 114.83683 * 15 13 12 17 17 C 1.37871 * 120.00181 * 294.84048 * 15 13 12 18 18 N 1.31517 * 120.00096 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 120.00196 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.46864 * 89.99855 * 19 17 15 21 21 H 1.48498 * 109.47105 * 209.99707 * 19 17 15 22 22 H 1.48495 * 109.46881 * 330.00091 * 19 17 15 23 23 C 1.53872 * 110.03419 * 203.61680 * 9 8 6 24 24 C 1.53000 * 109.46590 * 175.00234 * 3 2 1 25 25 H 1.09006 * 109.52129 * 304.86692 * 24 3 2 26 26 C 1.53184 * 109.52148 * 184.69010 * 24 3 2 27 27 C 1.53170 * 109.03742 * 183.11242 * 26 24 3 28 28 C 1.53095 * 109.16690 * 56.97595 * 27 26 24 29 29 O 1.42901 * 109.41400 * 302.39244 * 28 27 26 30 30 C 1.42909 * 114.09763 * 61.15280 * 29 28 27 31 31 H 1.09000 * 109.47598 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47610 * 300.00094 * 1 2 3 33 33 H 1.09009 * 109.46861 * 59.99981 * 1 2 3 34 34 H 1.09004 * 109.46963 * 239.99613 * 2 1 3 35 35 H 1.08996 * 109.46643 * 120.00128 * 2 1 3 36 36 H 0.97001 * 120.00172 * 265.00617 * 5 3 2 37 37 H 0.96999 * 120.00275 * 359.97438 * 8 6 5 38 38 H 1.09001 * 110.48620 * 214.35535 * 11 9 8 39 39 H 1.09004 * 110.48798 * 336.99369 * 11 9 8 40 40 H 1.09001 * 110.75744 * 156.25305 * 12 11 9 41 41 H 1.09000 * 110.75698 * 279.63123 * 12 11 9 42 42 H 0.96998 * 119.99977 * 180.02562 * 18 17 15 43 43 H 1.09002 * 110.03208 * 359.97438 * 23 9 8 44 44 H 1.08996 * 110.03362 * 121.42732 * 23 9 8 45 45 H 1.09006 * 109.53726 * 302.97354 * 26 24 3 46 46 H 1.08996 * 109.54647 * 63.23442 * 26 24 3 47 47 H 1.09005 * 109.52305 * 297.06915 * 27 26 24 48 48 H 1.09006 * 109.52408 * 176.87981 * 27 26 24 49 49 H 1.08994 * 109.48229 * 182.41126 * 28 27 26 50 50 H 1.09003 * 109.47865 * 62.37161 * 28 27 26 51 51 H 1.08997 * 109.47977 * 178.85843 * 30 29 28 52 52 H 1.08999 * 109.47671 * 58.83234 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 7 1.6525 2.0975 -1.2518 6 6 0.4352 2.6644 -1.3670 7 8 -0.3416 2.6318 -0.4320 8 7 0.0785 3.2665 -2.5188 9 6 -1.2445 3.8833 -2.6438 10 1 -1.9805 3.3039 -2.0862 11 6 -1.2038 5.3326 -2.1170 12 6 -0.9817 6.1921 -3.3863 13 6 -1.8413 5.4620 -4.4480 14 1 -2.8899 5.7425 -4.3486 15 6 -1.3435 5.7705 -5.8366 16 1 -0.9258 4.9840 -6.4477 17 6 -1.4213 7.0567 -6.3269 18 7 -1.9304 8.0144 -5.5831 19 14 -0.8036 7.4392 -8.0479 20 1 -1.9118 7.2664 -9.0213 21 1 -0.3146 8.8405 -8.0982 22 1 0.3064 6.5149 -8.3922 23 6 -1.6499 3.9655 -4.1259 24 6 3.5648 1.4442 0.1257 25 1 3.8578 0.8820 1.0124 26 6 4.0671 2.8866 0.2435 27 6 5.5980 2.8802 0.2903 28 6 6.1362 2.1778 -0.9591 29 8 5.6064 0.8523 -1.0241 30 6 4.1814 0.7973 -1.1172 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5139 -0.8901 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5138 0.8900 36 1 2.2720 2.1231 -1.9978 37 1 0.6980 3.2922 -3.2648 38 1 -2.1494 5.5923 -1.6411 39 1 -0.3763 5.4619 -1.4193 40 1 -1.3410 7.2095 -3.2316 41 1 0.0697 6.1919 -3.6739 42 1 -1.9855 8.9192 -5.9282 43 1 -0.8620 3.5470 -4.7522 44 1 -2.5830 3.4263 -4.2883 45 1 3.7310 3.4613 -0.6196 46 1 3.6761 3.3354 1.1566 47 1 5.9331 2.3476 1.1804 48 1 5.9659 3.9060 0.3184 49 1 7.2241 2.1325 -0.9104 50 1 5.8346 2.7337 -1.8469 51 1 3.8612 -0.2425 -1.1826 52 1 3.8543 1.3351 -2.0071 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883673671.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:36 Heat of formation + Delta-G solvation = -123.239260 kcal Electronic energy + Delta-G solvation = -29102.121901 eV Core-core repulsion = 25292.497779 eV Total energy + Delta-G solvation = -3809.624122 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.58140 -40.34308 -38.92245 -37.14988 -35.16879 -34.22884 -33.98673 -32.67196 -31.88558 -29.92804 -28.68713 -27.07044 -26.06409 -25.70685 -23.82427 -22.76234 -21.64876 -21.15938 -20.86702 -20.56069 -19.29934 -18.49718 -17.57035 -17.04643 -16.96632 -16.65461 -16.52136 -16.00423 -15.81868 -15.62194 -15.32387 -15.09710 -14.74085 -14.48502 -14.28268 -14.12436 -13.95278 -13.58332 -13.53561 -13.23998 -12.92982 -12.77446 -12.64647 -12.46941 -12.37893 -12.35214 -12.18615 -12.10375 -12.05314 -11.74151 -11.63402 -11.42735 -11.38453 -11.20515 -11.04944 -11.02097 -10.79288 -10.43455 -10.37671 -10.08029 -9.63756 -8.08605 -6.18154 1.43345 1.44650 1.53789 1.83237 2.30644 2.45892 2.93857 3.22721 3.38620 3.61279 3.72932 3.82410 3.99190 4.02325 4.07265 4.16817 4.23798 4.25905 4.27983 4.35700 4.54434 4.60258 4.70276 4.73117 4.76014 4.79754 4.85113 4.89430 4.96858 4.99470 5.03840 5.04748 5.10161 5.11430 5.14165 5.19903 5.21180 5.26587 5.29914 5.36829 5.45590 5.53900 5.68070 5.68625 5.78845 5.93521 6.01145 6.12504 6.25858 6.40209 6.93295 7.20208 7.49471 7.73857 9.00276 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.013556 B = 0.003009 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.054075 B = 9302.462724 C =10457.613546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.130 4.130 3 C 0.174 3.826 4 H 0.069 0.931 5 N -0.730 5.730 6 C 0.702 3.298 7 O -0.622 6.622 8 N -0.728 5.728 9 C 0.174 3.826 10 H 0.072 0.928 11 C -0.124 4.124 12 C -0.087 4.087 13 C 0.039 3.961 14 H -0.001 1.001 15 C -0.526 4.526 16 H 0.059 0.941 17 C 0.010 3.990 18 N -0.921 5.921 19 Si 0.952 3.048 20 H -0.279 1.279 21 H -0.289 1.289 22 H -0.264 1.264 23 C -0.109 4.109 24 C -0.117 4.117 25 H 0.102 0.898 26 C -0.120 4.120 27 C -0.151 4.151 28 C 0.053 3.947 29 O -0.396 6.396 30 C 0.063 3.937 31 H 0.052 0.948 32 H 0.039 0.961 33 H 0.036 0.964 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.403 0.597 37 H 0.403 0.597 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.033 0.967 41 H 0.039 0.961 42 H 0.258 0.742 43 H 0.071 0.929 44 H 0.061 0.939 45 H 0.059 0.941 46 H 0.064 0.936 47 H 0.073 0.927 48 H 0.081 0.919 49 H 0.104 0.896 50 H 0.052 0.948 51 H 0.108 0.892 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.622 -15.402 11.135 24.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.069 3.931 4 H 0.087 0.913 5 N -0.388 5.388 6 C 0.402 3.598 7 O -0.503 6.503 8 N -0.383 5.383 9 C 0.069 3.931 10 H 0.091 0.909 11 C -0.163 4.163 12 C -0.125 4.125 13 C 0.021 3.979 14 H 0.017 0.983 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.188 4.188 18 N -0.561 5.561 19 Si 0.778 3.222 20 H -0.205 1.205 21 H -0.215 1.215 22 H -0.188 1.188 23 C -0.147 4.147 24 C -0.136 4.136 25 H 0.120 0.880 26 C -0.158 4.158 27 C -0.188 4.188 28 C -0.023 4.023 29 O -0.315 6.315 30 C -0.014 4.014 31 H 0.071 0.929 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.240 0.760 37 H 0.239 0.761 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.082 0.918 47 H 0.092 0.908 48 H 0.099 0.901 49 H 0.123 0.877 50 H 0.071 0.929 51 H 0.126 0.874 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 14.996 -15.418 11.984 24.621 hybrid contribution 0.119 1.240 -1.509 1.956 sum 15.114 -14.178 10.475 23.221 Atomic orbital electron populations 1.21698 0.96467 1.00110 1.01311 1.22001 0.95559 0.95811 1.03477 1.20813 0.93354 0.93065 0.85851 0.91251 1.45191 1.15004 1.60854 1.17762 1.16064 0.82660 0.78105 0.82968 1.90889 1.53009 1.66540 1.39895 1.45289 1.18098 1.59891 1.14977 1.21232 0.83218 0.92303 0.96377 0.90946 1.22727 1.00456 0.95727 0.97417 1.22195 0.98581 0.97649 0.94062 1.19438 0.94156 0.90673 0.93669 0.98310 1.21559 1.40282 0.94148 1.00387 0.92271 1.25770 0.95580 0.96594 1.00879 1.70103 1.46433 1.01395 1.38143 0.85653 0.78769 0.77224 0.80578 1.20494 1.21452 1.18786 1.22415 1.00848 0.98175 0.93299 1.22020 0.92796 0.97685 1.01086 0.87988 1.21641 0.95844 0.95837 1.02431 1.22159 0.95334 1.01949 0.99391 1.22741 0.99555 0.83074 0.96966 1.87933 1.20981 1.28046 1.94577 1.22749 0.80414 1.02352 0.95869 0.92903 0.94212 0.94495 0.90531 0.89439 0.76028 0.76105 0.92366 0.92814 0.94797 0.94241 0.93290 0.91069 0.92012 0.92268 0.91770 0.90805 0.90055 0.87747 0.92933 0.87434 0.92932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.51 71.98 0.61 -2.56 16 2 C -0.13 -2.13 5.24 30.59 0.16 -1.97 16 3 C 0.17 3.12 1.95 44.99 0.09 3.21 16 4 H 0.07 1.61 7.58 -2.39 -0.02 1.59 16 5 N -0.73 -14.75 4.34 -457.82 -1.99 -16.73 16 6 C 0.70 20.16 7.12 179.05 1.28 21.44 16 7 O -0.62 -22.38 13.15 -4.01 -0.05 -22.44 16 8 N -0.73 -21.13 5.05 -454.33 -2.29 -23.43 16 9 C 0.17 6.11 3.23 45.71 0.15 6.25 16 10 H 0.07 2.63 7.60 -2.39 -0.02 2.61 16 11 C -0.12 -4.83 6.53 31.67 0.21 -4.62 16 12 C -0.09 -3.99 5.75 31.89 0.18 -3.81 16 13 C 0.04 1.90 2.71 -10.46 -0.03 1.87 16 14 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 15 C -0.53 -27.72 8.47 25.60 0.22 -27.50 16 16 H 0.06 3.00 7.54 -2.91 -0.02 2.97 16 17 C 0.01 0.56 5.35 84.65 0.45 1.01 16 18 N -0.92 -53.20 12.29 21.45 0.26 -52.94 16 19 Si 0.95 42.57 29.54 68.60 2.03 44.60 16 20 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 21 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 22 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 23 C -0.11 -4.16 6.13 31.32 0.19 -3.97 16 24 C -0.12 -1.60 2.20 -10.71 -0.02 -1.62 16 25 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 26 C -0.12 -1.79 5.23 30.71 0.16 -1.63 16 27 C -0.15 -1.88 6.14 30.68 0.19 -1.69 16 28 C 0.05 0.69 6.84 72.01 0.49 1.19 16 29 O -0.40 -6.51 10.77 -148.98 -1.60 -8.11 16 30 C 0.06 0.83 5.63 72.01 0.41 1.24 16 31 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.04 1.05 7.84 -2.39 -0.02 1.03 16 33 H 0.04 1.03 5.64 -2.38 -0.01 1.01 16 34 H 0.08 1.07 6.88 -2.38 -0.02 1.05 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.40 6.39 6.56 -92.71 -0.61 5.78 16 37 H 0.40 10.13 8.31 -92.71 -0.77 9.36 16 38 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.05 2.04 8.04 -2.38 -0.02 2.02 16 40 H 0.03 1.75 7.56 -2.39 -0.02 1.73 16 41 H 0.04 1.83 8.05 -2.39 -0.02 1.81 16 42 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 43 H 0.07 2.56 7.12 -2.39 -0.02 2.54 16 44 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.06 1.00 7.67 -2.38 -0.02 0.98 16 46 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 48 H 0.08 0.90 8.14 -2.38 -0.02 0.89 16 49 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 51 H 0.11 1.22 6.81 -2.39 -0.02 1.20 16 52 H 0.05 0.66 6.20 -2.39 -0.01 0.64 16 Total: -1.00 -64.94 390.79 0.61 -64.33 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: -0.47 Total: 27.87 kcal Atomic # 6 Polarization: -17.89 SS G_CDS: 4.73 Total: -13.16 kcal Atomic # 7 Polarization: -89.08 SS G_CDS: -4.02 Total: -93.10 kcal Atomic # 8 Polarization: -28.89 SS G_CDS: -1.66 Total: -30.55 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -64.94 0.61 -64.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883673671.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.907 kcal (2) G-P(sol) polarization free energy of solvation -64.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds