Wall clock time and date at job start Tue Mar 31 2020 15:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46980 * 2 1 4 4 H 1.09003 * 109.46772 * 305.00053 * 3 2 1 5 5 N 1.46499 * 109.47469 * 65.00049 * 3 2 1 6 6 C 1.34775 * 119.99882 * 275.00062 * 5 3 2 7 7 O 1.21585 * 120.00237 * 0.02562 * 6 5 3 8 8 N 1.34779 * 119.99657 * 179.97438 * 6 5 3 9 9 C 1.46505 * 119.99750 * 180.02562 * 8 6 5 10 10 H 1.09003 * 110.53509 * 327.61542 * 9 8 6 11 11 C 1.54463 * 110.65957 * 90.24214 * 9 8 6 12 12 C 1.53877 * 106.68421 * 142.05289 * 11 9 8 13 13 C 1.54265 * 106.59605 * 0.15594 * 12 11 9 14 14 H 1.09006 * 110.48556 * 95.06998 * 13 12 11 15 15 C 1.50701 * 110.48496 * 217.70899 * 13 12 11 16 16 H 1.08007 * 119.99597 * 114.77641 * 15 13 12 17 17 C 1.37869 * 120.00267 * 294.77624 * 15 13 12 18 18 N 1.31511 * 120.00107 * 0.02562 * 17 15 13 19 19 Si 1.86806 * 120.00208 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46627 * 60.00028 * 19 17 15 21 21 H 1.48498 * 109.47465 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47046 * 300.00861 * 19 17 15 23 23 C 1.54887 * 104.20056 * 336.39127 * 13 12 11 24 24 C 1.52998 * 109.47160 * 185.00475 * 3 2 1 25 25 H 1.09001 * 109.52783 * 59.99328 * 24 3 2 26 26 C 1.53180 * 109.52614 * 180.12413 * 24 3 2 27 27 C 1.53182 * 109.03460 * 176.82264 * 26 24 3 28 28 C 1.53102 * 109.21195 * 303.11240 * 27 26 24 29 29 O 1.42900 * 109.41185 * 57.57640 * 28 27 26 30 30 C 1.42899 * 114.10094 * 298.83886 * 29 28 27 31 31 H 1.09000 * 109.46856 * 300.00034 * 1 2 3 32 32 H 1.08997 * 109.47189 * 59.99790 * 1 2 3 33 33 H 1.08998 * 109.46924 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.46856 * 239.99966 * 2 1 3 35 35 H 1.08998 * 109.47750 * 119.99697 * 2 1 3 36 36 H 0.97001 * 119.99540 * 94.99909 * 5 3 2 37 37 H 0.97002 * 120.00353 * 0.02562 * 8 6 5 38 38 H 1.08999 * 109.85715 * 22.81084 * 11 9 8 39 39 H 1.09003 * 110.15968 * 261.45715 * 11 9 8 40 40 H 1.08995 * 110.02951 * 240.87549 * 12 11 9 41 41 H 1.08993 * 110.03177 * 119.44086 * 12 11 9 42 42 H 0.97007 * 120.00152 * 180.02562 * 18 17 15 43 43 H 1.09002 * 110.75856 * 156.25785 * 23 13 12 44 44 H 1.09006 * 110.75640 * 279.44771 * 23 13 12 45 45 H 1.08997 * 109.53914 * 296.75254 * 26 24 3 46 46 H 1.09004 * 109.54315 * 57.01192 * 26 24 3 47 47 H 1.08999 * 109.52380 * 183.17836 * 27 26 24 48 48 H 1.09000 * 109.52304 * 63.04816 * 27 26 24 49 49 H 1.09000 * 109.47726 * 297.59218 * 28 27 26 50 50 H 1.08997 * 109.47680 * 177.55799 * 28 27 26 51 51 H 1.08999 * 109.48205 * 301.17969 * 30 29 28 52 52 H 1.08995 * 109.49357 * 181.15172 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 7 1.6524 2.0976 1.2518 6 6 0.4351 2.6645 1.3669 7 8 -0.3416 2.6318 0.4321 8 7 0.0784 3.2666 2.5187 9 6 -1.2450 3.8824 2.6441 10 1 -1.5739 4.2806 1.6842 11 6 -2.2716 2.8625 3.1844 12 6 -3.1990 3.6333 4.1403 13 6 -2.7082 5.0958 4.1463 14 1 -3.2752 5.6914 3.4307 15 6 -2.8199 5.6838 5.5294 16 1 -1.9284 5.9692 6.0683 17 6 -4.0598 5.8576 6.1066 18 7 -5.1451 5.5097 5.4506 19 14 -4.1980 6.5858 7.8213 20 1 -3.6042 7.9469 7.8303 21 1 -5.6287 6.6668 8.2109 22 1 -3.4708 5.7222 8.7860 23 6 -1.2234 5.0002 3.7161 24 6 3.5648 1.4444 -0.1258 25 1 3.8541 0.9572 -1.0570 26 6 4.0769 2.8880 -0.1229 27 6 5.6080 2.8750 -0.1691 28 6 6.1410 2.0656 1.0162 29 8 5.6019 0.7430 0.9688 30 6 4.1767 0.6903 1.0577 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.2720 2.1232 1.9977 37 1 0.6980 3.2923 3.2647 38 1 -1.7557 2.0684 3.7241 39 1 -2.8500 2.4404 2.3625 40 1 -3.1331 3.2133 5.1439 41 1 -4.2272 3.5859 3.7819 42 1 -6.0176 5.6322 5.8566 43 1 -0.8846 5.9423 3.2851 44 1 -0.5945 4.7146 4.5593 45 1 3.6893 3.4142 -0.9952 46 1 3.7446 3.3910 0.7854 47 1 5.9829 3.8968 -0.1104 48 1 5.9404 2.4180 -1.1012 49 1 5.8432 2.5465 1.9479 50 1 7.2286 2.0170 0.9633 51 1 3.8532 1.1531 1.9900 52 1 3.8491 -0.3491 1.0350 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883673672.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:42 Heat of formation + Delta-G solvation = -106.908506 kcal Electronic energy + Delta-G solvation = -28834.159960 eV Core-core repulsion = 25025.243993 eV Total energy + Delta-G solvation = -3808.915967 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.65325 -39.41834 -37.47542 -36.15757 -33.73148 -33.55443 -32.49338 -31.47212 -31.20758 -28.11628 -27.12197 -26.11522 -25.46288 -23.79593 -23.17201 -21.47718 -20.96666 -19.99416 -19.73374 -19.07623 -18.14331 -16.93164 -16.46422 -16.39055 -15.86947 -15.45269 -15.11524 -14.88574 -14.71262 -14.62922 -14.25044 -13.98604 -13.77341 -13.44725 -13.28961 -13.01090 -12.52809 -12.46708 -12.33761 -11.95403 -11.79133 -11.69326 -11.49376 -11.40328 -11.17119 -11.00097 -10.91560 -10.84303 -10.68981 -10.59061 -10.57331 -10.27473 -9.97366 -9.79384 -9.78453 -9.56017 -9.22242 -9.01105 -8.74243 -8.43474 -8.37515 -6.00453 -4.03731 2.87025 3.31297 3.36732 3.38371 3.43662 3.49791 4.25564 4.32607 4.38471 4.43482 4.46639 4.55697 4.74640 4.85765 4.96886 5.04087 5.14111 5.24140 5.31390 5.32954 5.36172 5.46792 5.53887 5.56230 5.60814 5.68854 5.70942 5.72117 5.87697 5.88329 5.93089 5.98603 6.15052 6.33104 6.39165 6.51724 6.54431 6.56935 6.69464 6.74773 6.80499 6.92363 7.00356 7.08105 7.32670 7.36141 7.71549 7.88727 8.02264 8.23471 8.44574 8.85624 8.98902 9.60229 11.09295 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.019338 B = 0.002515 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.610881 B =11128.936632 C =11975.774337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.172 3.828 4 H 0.092 0.908 5 N -0.747 5.747 6 C 0.702 3.298 7 O -0.586 6.586 8 N -0.735 5.735 9 C 0.154 3.846 10 H 0.086 0.914 11 C -0.133 4.133 12 C -0.097 4.097 13 C 0.052 3.948 14 H 0.033 0.967 15 C -0.515 4.515 16 H 0.054 0.946 17 C 0.063 3.937 18 N -0.888 5.888 19 Si 0.889 3.111 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.120 4.120 24 C -0.130 4.130 25 H 0.093 0.907 26 C -0.117 4.117 27 C -0.156 4.156 28 C 0.058 3.942 29 O -0.382 6.382 30 C 0.064 3.936 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.041 0.959 34 H 0.067 0.933 35 H 0.061 0.939 36 H 0.390 0.610 37 H 0.391 0.609 38 H 0.049 0.951 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.055 0.945 42 H 0.260 0.740 43 H 0.051 0.949 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.073 0.927 48 H 0.071 0.929 49 H 0.050 0.950 50 H 0.092 0.908 51 H 0.049 0.951 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.970 -9.469 -10.553 25.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.066 3.934 4 H 0.110 0.890 5 N -0.404 5.404 6 C 0.402 3.598 7 O -0.464 6.464 8 N -0.388 5.388 9 C 0.050 3.950 10 H 0.104 0.896 11 C -0.172 4.172 12 C -0.135 4.135 13 C 0.033 3.967 14 H 0.051 0.949 15 C -0.553 4.553 16 H 0.073 0.927 17 C -0.139 4.139 18 N -0.526 5.526 19 Si 0.717 3.283 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.204 1.204 23 C -0.158 4.158 24 C -0.149 4.149 25 H 0.111 0.889 26 C -0.155 4.155 27 C -0.194 4.194 28 C -0.019 4.019 29 O -0.300 6.300 30 C -0.013 4.013 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.224 0.776 37 H 0.224 0.776 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.092 0.908 48 H 0.089 0.911 49 H 0.069 0.931 50 H 0.110 0.890 51 H 0.067 0.933 52 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 20.129 -9.653 -11.433 25.081 hybrid contribution 0.214 0.620 1.727 1.847 sum 20.343 -9.033 -9.706 24.282 Atomic orbital electron populations 1.21777 0.94366 1.00244 1.03684 1.22028 0.97647 0.95987 1.01783 1.20782 0.92113 0.93213 0.87284 0.89040 1.45289 1.16295 1.61955 1.16881 1.15989 0.81821 0.78335 0.83679 1.90917 1.51729 1.64723 1.39041 1.45441 1.18771 1.60480 1.14150 1.21959 0.79851 0.93265 0.99905 0.89632 1.22661 0.97581 0.97824 0.99177 1.22085 0.97495 0.97167 0.96791 1.19385 0.88223 0.92664 0.96413 0.94881 1.21079 0.92208 1.41561 1.00489 0.92740 1.24980 0.95986 0.95445 0.97522 1.69961 0.97690 1.47547 1.37431 0.86715 0.76905 0.79718 0.84958 1.20329 1.21356 1.20351 1.22861 1.01602 0.95420 0.95902 1.22129 0.94579 0.97294 1.00878 0.88898 1.21626 0.94857 0.95821 1.03163 1.22202 0.96343 1.00998 0.99845 1.22606 0.98727 0.83418 0.97130 1.87952 1.20369 1.27198 1.94499 1.22704 0.80739 1.01434 0.96396 0.91874 0.92200 0.94010 0.91401 0.91994 0.77583 0.77614 0.93258 0.93086 0.93027 0.92654 0.92990 0.92981 0.92235 0.91134 0.91407 0.90793 0.91055 0.93125 0.88951 0.93323 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 8.51 37.16 0.32 -1.44 16 2 C -0.14 -1.25 5.11 -26.73 -0.14 -1.39 16 3 C 0.17 1.60 2.01 -67.93 -0.14 1.46 16 4 H 0.09 1.05 7.58 -51.93 -0.39 0.66 16 5 N -0.75 -7.63 4.22 -58.68 -0.25 -7.87 16 6 C 0.70 10.12 7.13 -86.92 -0.62 9.50 16 7 O -0.59 -10.61 13.12 5.29 0.07 -10.54 16 8 N -0.74 -10.56 5.11 -56.95 -0.29 -10.85 16 9 C 0.15 2.77 3.23 -66.16 -0.21 2.56 16 10 H 0.09 1.68 7.56 -51.93 -0.39 1.29 16 11 C -0.13 -2.58 6.55 -25.51 -0.17 -2.74 16 12 C -0.10 -2.23 5.60 -25.61 -0.14 -2.37 16 13 C 0.05 1.26 2.73 -90.11 -0.25 1.02 16 14 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 15 C -0.52 -13.79 8.36 -34.44 -0.29 -14.08 16 16 H 0.05 1.42 7.77 -52.48 -0.41 1.02 16 17 C 0.06 1.72 5.35 -17.82 -0.10 1.62 16 18 N -0.89 -25.43 12.63 55.43 0.70 -24.73 16 19 Si 0.89 21.03 29.54 -169.99 -5.02 16.00 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 C -0.12 -2.33 5.89 -24.74 -0.15 -2.47 16 24 C -0.13 -0.95 2.24 -90.48 -0.20 -1.15 16 25 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 26 C -0.12 -0.86 5.20 -26.54 -0.14 -1.00 16 27 C -0.16 -0.99 6.13 -26.58 -0.16 -1.16 16 28 C 0.06 0.39 6.84 37.21 0.25 0.65 16 29 O -0.38 -3.36 10.76 -35.23 -0.38 -3.74 16 30 C 0.06 0.47 5.57 37.21 0.21 0.68 16 31 H 0.06 0.94 5.64 -51.93 -0.29 0.64 16 32 H 0.06 0.81 7.84 -51.93 -0.41 0.41 16 33 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.52 6.77 -51.93 -0.35 0.17 16 36 H 0.39 3.15 6.63 -40.82 -0.27 2.88 16 37 H 0.39 4.63 8.58 -40.82 -0.35 4.28 16 38 H 0.05 0.90 8.04 -51.93 -0.42 0.48 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.05 1.25 7.83 -51.93 -0.41 0.85 16 41 H 0.05 1.37 8.06 -51.93 -0.42 0.96 16 42 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 43 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.06 1.11 7.92 -51.93 -0.41 0.70 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.53 7.37 -51.93 -0.38 0.15 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 50 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.05 0.33 6.43 -51.93 -0.33 0.00 16 52 H 0.10 0.68 6.69 -51.93 -0.35 0.33 16 LS Contribution 391.73 15.07 5.90 5.90 Total: -1.00 -30.44 391.73 -10.55 -40.99 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -9.37 Total: 5.17 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: -1.92 Total: -10.33 kcal Atomic # 7 Polarization: -43.62 SS G_CDS: 0.16 Total: -43.46 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.31 Total: -14.28 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -30.44 -10.55 -40.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883673672.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.921 kcal (2) G-P(sol) polarization free energy of solvation -30.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds