Wall clock time and date at job start Tue Mar 31 2020 15:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46980 * 2 1 4 4 H 1.09003 * 109.46772 * 305.00053 * 3 2 1 5 5 N 1.46499 * 109.47469 * 65.00049 * 3 2 1 6 6 C 1.34775 * 119.99882 * 275.00062 * 5 3 2 7 7 O 1.21585 * 120.00237 * 0.02562 * 6 5 3 8 8 N 1.34779 * 119.99657 * 179.97438 * 6 5 3 9 9 C 1.46505 * 119.99750 * 180.02562 * 8 6 5 10 10 H 1.09003 * 110.53509 * 327.61542 * 9 8 6 11 11 C 1.54463 * 110.65957 * 90.24214 * 9 8 6 12 12 C 1.53877 * 106.68421 * 142.05289 * 11 9 8 13 13 C 1.54265 * 106.59605 * 0.15594 * 12 11 9 14 14 H 1.09006 * 110.48556 * 95.06998 * 13 12 11 15 15 C 1.50701 * 110.48496 * 217.70899 * 13 12 11 16 16 H 1.08007 * 119.99597 * 114.77641 * 15 13 12 17 17 C 1.37869 * 120.00267 * 294.77624 * 15 13 12 18 18 N 1.31511 * 120.00107 * 0.02562 * 17 15 13 19 19 Si 1.86806 * 120.00208 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46627 * 60.00028 * 19 17 15 21 21 H 1.48498 * 109.47465 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47046 * 300.00861 * 19 17 15 23 23 C 1.54887 * 104.20056 * 336.39127 * 13 12 11 24 24 C 1.52998 * 109.47160 * 185.00475 * 3 2 1 25 25 H 1.09001 * 109.52783 * 59.99328 * 24 3 2 26 26 C 1.53180 * 109.52614 * 180.12413 * 24 3 2 27 27 C 1.53182 * 109.03460 * 176.82264 * 26 24 3 28 28 C 1.53102 * 109.21195 * 303.11240 * 27 26 24 29 29 O 1.42900 * 109.41185 * 57.57640 * 28 27 26 30 30 C 1.42899 * 114.10094 * 298.83886 * 29 28 27 31 31 H 1.09000 * 109.46856 * 300.00034 * 1 2 3 32 32 H 1.08997 * 109.47189 * 59.99790 * 1 2 3 33 33 H 1.08998 * 109.46924 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.46856 * 239.99966 * 2 1 3 35 35 H 1.08998 * 109.47750 * 119.99697 * 2 1 3 36 36 H 0.97001 * 119.99540 * 94.99909 * 5 3 2 37 37 H 0.97002 * 120.00353 * 0.02562 * 8 6 5 38 38 H 1.08999 * 109.85715 * 22.81084 * 11 9 8 39 39 H 1.09003 * 110.15968 * 261.45715 * 11 9 8 40 40 H 1.08995 * 110.02951 * 240.87549 * 12 11 9 41 41 H 1.08993 * 110.03177 * 119.44086 * 12 11 9 42 42 H 0.97007 * 120.00152 * 180.02562 * 18 17 15 43 43 H 1.09002 * 110.75856 * 156.25785 * 23 13 12 44 44 H 1.09006 * 110.75640 * 279.44771 * 23 13 12 45 45 H 1.08997 * 109.53914 * 296.75254 * 26 24 3 46 46 H 1.09004 * 109.54315 * 57.01192 * 26 24 3 47 47 H 1.08999 * 109.52380 * 183.17836 * 27 26 24 48 48 H 1.09000 * 109.52304 * 63.04816 * 27 26 24 49 49 H 1.09000 * 109.47726 * 297.59218 * 28 27 26 50 50 H 1.08997 * 109.47680 * 177.55799 * 28 27 26 51 51 H 1.08999 * 109.48205 * 301.17969 * 30 29 28 52 52 H 1.08995 * 109.49357 * 181.15172 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 7 1.6524 2.0976 1.2518 6 6 0.4351 2.6645 1.3669 7 8 -0.3416 2.6318 0.4321 8 7 0.0784 3.2666 2.5187 9 6 -1.2450 3.8824 2.6441 10 1 -1.5739 4.2806 1.6842 11 6 -2.2716 2.8625 3.1844 12 6 -3.1990 3.6333 4.1403 13 6 -2.7082 5.0958 4.1463 14 1 -3.2752 5.6914 3.4307 15 6 -2.8199 5.6838 5.5294 16 1 -1.9284 5.9692 6.0683 17 6 -4.0598 5.8576 6.1066 18 7 -5.1451 5.5097 5.4506 19 14 -4.1980 6.5858 7.8213 20 1 -3.6042 7.9469 7.8303 21 1 -5.6287 6.6668 8.2109 22 1 -3.4708 5.7222 8.7860 23 6 -1.2234 5.0002 3.7161 24 6 3.5648 1.4444 -0.1258 25 1 3.8541 0.9572 -1.0570 26 6 4.0769 2.8880 -0.1229 27 6 5.6080 2.8750 -0.1691 28 6 6.1410 2.0656 1.0162 29 8 5.6019 0.7430 0.9688 30 6 4.1767 0.6903 1.0577 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 2.2720 2.1232 1.9977 37 1 0.6980 3.2923 3.2647 38 1 -1.7557 2.0684 3.7241 39 1 -2.8500 2.4404 2.3625 40 1 -3.1331 3.2133 5.1439 41 1 -4.2272 3.5859 3.7819 42 1 -6.0176 5.6322 5.8566 43 1 -0.8846 5.9423 3.2851 44 1 -0.5945 4.7146 4.5593 45 1 3.6893 3.4142 -0.9952 46 1 3.7446 3.3910 0.7854 47 1 5.9829 3.8968 -0.1104 48 1 5.9404 2.4180 -1.1012 49 1 5.8432 2.5465 1.9479 50 1 7.2286 2.0170 0.9633 51 1 3.8532 1.1531 1.9900 52 1 3.8491 -0.3491 1.0350 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883673672.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:27:40 Heat of formation + Delta-G solvation = -125.652629 kcal Electronic energy + Delta-G solvation = -28834.972767 eV Core-core repulsion = 25025.243993 eV Total energy + Delta-G solvation = -3809.728773 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.57480 -40.31275 -38.90139 -37.18463 -35.26500 -34.21193 -34.05091 -32.75315 -31.87870 -29.92156 -28.64681 -27.05440 -26.04563 -25.67737 -23.83296 -22.60819 -21.69559 -21.45239 -20.84097 -20.56316 -19.32707 -18.43658 -17.60951 -17.06366 -16.77328 -16.63200 -16.45575 -16.34512 -15.86715 -15.56751 -15.37141 -15.03799 -14.68521 -14.39266 -14.25426 -14.14475 -13.98408 -13.65529 -13.57001 -13.26434 -13.05203 -12.77866 -12.66200 -12.50521 -12.42593 -12.37031 -12.12457 -12.08030 -12.04322 -11.74893 -11.66624 -11.43369 -11.36239 -11.20223 -11.10303 -11.00667 -10.75663 -10.46170 -10.36271 -10.11026 -9.65086 -8.09667 -6.19739 1.43960 1.45014 1.52489 1.79302 2.28756 2.45696 2.95552 3.21739 3.36076 3.61532 3.73564 3.83392 3.96258 4.03585 4.06085 4.17230 4.23681 4.24137 4.27345 4.36237 4.55701 4.59844 4.68683 4.72892 4.76478 4.82344 4.86113 4.88950 4.89967 5.00326 5.02917 5.04677 5.08783 5.10267 5.11727 5.16305 5.20823 5.26182 5.36856 5.38024 5.43158 5.52743 5.66944 5.67289 5.72846 5.93421 5.98677 6.11193 6.27981 6.39489 6.92015 7.20641 7.48085 7.73020 8.99642 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.019338 B = 0.002515 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1447.610881 B =11128.936632 C =11975.774337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.131 4.131 3 C 0.175 3.825 4 H 0.069 0.931 5 N -0.727 5.727 6 C 0.701 3.299 7 O -0.624 6.624 8 N -0.726 5.726 9 C 0.172 3.828 10 H 0.067 0.933 11 C -0.121 4.121 12 C -0.086 4.086 13 C 0.040 3.960 14 H -0.003 1.003 15 C -0.528 4.528 16 H 0.061 0.939 17 C 0.009 3.991 18 N -0.923 5.923 19 Si 0.954 3.046 20 H -0.270 1.270 21 H -0.289 1.289 22 H -0.268 1.268 23 C -0.104 4.104 24 C -0.117 4.117 25 H 0.099 0.901 26 C -0.118 4.118 27 C -0.151 4.151 28 C 0.053 3.947 29 O -0.398 6.398 30 C 0.063 3.937 31 H 0.036 0.964 32 H 0.038 0.962 33 H 0.050 0.950 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.404 0.596 37 H 0.407 0.593 38 H 0.066 0.934 39 H 0.045 0.955 40 H 0.036 0.964 41 H 0.024 0.976 42 H 0.259 0.741 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.062 0.938 46 H 0.064 0.936 47 H 0.083 0.917 48 H 0.070 0.930 49 H 0.056 0.944 50 H 0.103 0.897 51 H 0.056 0.944 52 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.915 -10.130 -9.770 27.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.169 4.169 3 C 0.069 3.931 4 H 0.087 0.913 5 N -0.385 5.385 6 C 0.401 3.599 7 O -0.505 6.505 8 N -0.381 5.381 9 C 0.066 3.934 10 H 0.085 0.915 11 C -0.160 4.160 12 C -0.125 4.125 13 C 0.021 3.979 14 H 0.016 0.984 15 C -0.566 4.566 16 H 0.079 0.921 17 C -0.190 4.190 18 N -0.562 5.562 19 Si 0.780 3.220 20 H -0.195 1.195 21 H -0.215 1.215 22 H -0.193 1.193 23 C -0.142 4.142 24 C -0.136 4.136 25 H 0.117 0.883 26 C -0.156 4.156 27 C -0.189 4.189 28 C -0.023 4.023 29 O -0.317 6.317 30 C -0.013 4.013 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.241 0.759 37 H 0.243 0.757 38 H 0.085 0.915 39 H 0.064 0.936 40 H 0.054 0.946 41 H 0.043 0.957 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.093 0.907 45 H 0.081 0.919 46 H 0.083 0.917 47 H 0.101 0.899 48 H 0.089 0.911 49 H 0.074 0.926 50 H 0.121 0.879 51 H 0.074 0.926 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 23.150 -10.325 -10.631 27.487 hybrid contribution -0.702 0.823 1.427 1.790 sum 22.448 -9.502 -9.204 26.056 Atomic orbital electron populations 1.21704 0.96682 1.00038 1.01285 1.22012 0.95319 0.96072 1.03496 1.20801 0.93453 0.92905 0.85896 0.91285 1.45108 1.14935 1.60670 1.17763 1.16087 0.82578 0.78260 0.82953 1.90907 1.53211 1.66044 1.40324 1.45084 1.17679 1.60341 1.14987 1.21457 0.81244 0.92378 0.98330 0.91456 1.22508 0.97258 0.98045 0.98172 1.21861 0.96729 0.97224 0.96659 1.19374 0.91219 0.92457 0.94810 0.98435 1.21495 0.92451 1.41163 1.01486 0.92103 1.25807 0.95774 0.96010 1.01392 1.70110 0.98077 1.48920 1.39139 0.85678 0.76743 0.79225 0.80404 1.19517 1.21528 1.19338 1.22645 0.98330 0.96464 0.96741 1.22019 0.92605 0.97550 1.01463 0.88284 1.21628 0.95713 0.95596 1.02658 1.22165 0.95391 1.01569 0.99765 1.22750 0.99407 0.82745 0.97419 1.87937 1.20898 1.28334 1.94579 1.22759 0.80352 1.01868 0.96363 0.94532 0.94295 0.93081 0.89468 0.90436 0.75860 0.75671 0.91524 0.93649 0.94553 0.95680 0.93217 0.92200 0.90664 0.91894 0.91712 0.89852 0.91133 0.92560 0.87878 0.92630 0.87665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 8.51 71.98 0.61 -2.73 16 2 C -0.13 -2.14 5.11 30.59 0.16 -1.99 16 3 C 0.17 2.97 2.01 44.99 0.09 3.07 16 4 H 0.07 1.55 7.58 -2.39 -0.02 1.53 16 5 N -0.73 -13.47 4.22 -457.81 -1.93 -15.40 16 6 C 0.70 19.44 7.13 179.05 1.28 20.72 16 7 O -0.62 -22.69 13.12 -3.98 -0.05 -22.75 16 8 N -0.73 -19.63 5.11 -452.34 -2.31 -21.94 16 9 C 0.17 6.07 3.23 46.13 0.15 6.22 16 10 H 0.07 2.67 7.56 -2.39 -0.02 2.66 16 11 C -0.12 -4.66 6.55 31.39 0.21 -4.46 16 12 C -0.09 -4.08 5.60 31.32 0.18 -3.91 16 13 C 0.04 2.00 2.73 -10.47 -0.03 1.97 16 14 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 15 C -0.53 -28.38 8.36 25.60 0.21 -28.16 16 16 H 0.06 3.12 7.77 -2.91 -0.02 3.10 16 17 C 0.01 0.48 5.35 84.65 0.45 0.93 16 18 N -0.92 -54.36 12.63 21.44 0.27 -54.09 16 19 Si 0.95 43.16 29.54 68.60 2.03 45.18 16 20 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 23 C -0.10 -3.94 5.89 31.88 0.19 -3.75 16 24 C -0.12 -1.45 2.24 -10.70 -0.02 -1.47 16 25 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 26 C -0.12 -1.50 5.20 30.72 0.16 -1.34 16 27 C -0.15 -1.57 6.13 30.69 0.19 -1.39 16 28 C 0.05 0.58 6.84 72.02 0.49 1.07 16 29 O -0.40 -5.94 10.76 -148.98 -1.60 -7.54 16 30 C 0.06 0.74 5.57 72.02 0.40 1.14 16 31 H 0.04 1.06 5.64 -2.39 -0.01 1.05 16 32 H 0.04 1.07 7.84 -2.39 -0.02 1.05 16 33 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.08 1.07 6.77 -2.39 -0.02 1.05 16 36 H 0.40 5.35 6.63 -92.71 -0.61 4.74 16 37 H 0.41 8.45 8.58 -92.71 -0.80 7.66 16 38 H 0.07 2.34 8.04 -2.39 -0.02 2.32 16 39 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.04 1.79 7.83 -2.39 -0.02 1.77 16 41 H 0.02 1.29 8.06 -2.39 -0.02 1.27 16 42 H 0.26 14.61 8.31 -92.70 -0.77 13.84 16 43 H 0.06 2.18 8.14 -2.39 -0.02 2.17 16 44 H 0.07 2.64 7.92 -2.38 -0.02 2.62 16 45 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.06 0.86 7.37 -2.38 -0.02 0.84 16 47 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 49 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 50 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 51 H 0.06 0.57 6.43 -2.39 -0.02 0.55 16 52 H 0.11 1.10 6.69 -2.39 -0.02 1.08 16 Total: -1.00 -67.64 391.73 0.61 -67.04 By element: Atomic # 1 Polarization: 24.07 SS G_CDS: -0.51 Total: 23.57 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: 4.71 Total: -14.07 kcal Atomic # 7 Polarization: -87.46 SS G_CDS: -3.97 Total: -91.43 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -1.66 Total: -30.29 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -67.64 0.61 -67.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883673672.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.615 kcal (2) G-P(sol) polarization free energy of solvation -67.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds