Wall clock time and date at job start Tue Mar 31 2020 14:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46990 * 2 1 4 4 H 1.08996 * 109.99158 * 53.91163 * 3 2 1 5 5 O 1.43751 * 109.87383 * 292.82804 * 3 2 1 6 6 C 1.44388 * 106.97034 * 214.06284 * 5 3 2 7 7 C 1.54999 * 103.48970 * 40.06460 * 6 5 3 8 8 C 1.54099 * 109.87524 * 175.00042 * 3 2 1 9 9 H 1.08995 * 110.49025 * 2.64088 * 8 3 2 10 10 C 1.50702 * 110.48692 * 240.12701 * 8 3 2 11 11 O 1.21288 * 119.99725 * 359.97438 * 10 8 3 12 12 N 1.34769 * 120.00276 * 180.02562 * 10 8 3 13 13 C 1.46498 * 120.00094 * 359.97438 * 12 10 8 14 14 C 1.46500 * 120.00271 * 180.02562 * 12 10 8 15 15 H 1.09005 * 108.44486 * 2.30269 * 14 12 10 16 16 C 1.52567 * 108.51187 * 244.76385 * 14 12 10 17 17 C 1.50880 * 109.36213 * 153.73276 * 16 14 12 18 18 C 1.53944 * 110.09899 * 91.88280 * 17 16 14 19 19 N 1.47609 * 112.14061 * 319.44074 * 18 17 16 20 20 C 1.36936 * 118.64548 * 137.84735 * 19 18 17 21 21 H 1.07998 * 119.99803 * 206.53127 * 20 19 18 22 22 C 1.38807 * 120.00188 * 26.52188 * 20 19 18 23 23 N 1.31624 * 120.00018 * 15.66508 * 22 20 19 24 24 Si 1.86804 * 120.00232 * 195.67022 * 22 20 19 25 25 H 1.48502 * 109.47015 * 59.99918 * 24 22 20 26 26 H 1.48504 * 109.47049 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.46758 * 299.99842 * 24 22 20 28 28 C 1.44578 * 122.71096 * 317.86552 * 19 18 17 29 29 C 1.47092 * 108.51598 * 119.99194 * 14 12 10 30 30 H 1.08996 * 109.47423 * 299.99996 * 1 2 3 31 31 H 1.09003 * 109.46636 * 60.00510 * 1 2 3 32 32 H 1.09002 * 109.47013 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46777 * 239.99763 * 2 1 3 34 34 H 1.09002 * 109.46670 * 120.00042 * 2 1 3 35 35 H 1.09000 * 110.61712 * 281.55950 * 6 5 3 36 36 H 1.09002 * 110.74863 * 158.62806 * 6 5 3 37 37 H 1.08998 * 110.90089 * 204.77754 * 7 6 5 38 38 H 1.08992 * 110.93570 * 81.18718 * 7 6 5 39 39 H 1.09003 * 109.47091 * 90.00164 * 13 12 10 40 40 H 1.08995 * 109.47445 * 210.00416 * 13 12 10 41 41 H 1.09001 * 109.47050 * 330.00346 * 13 12 10 42 42 H 1.09004 * 109.49149 * 273.69576 * 16 14 12 43 43 H 1.09006 * 109.49029 * 33.76322 * 16 14 12 44 44 H 1.08999 * 109.36269 * 331.69130 * 17 16 14 45 45 H 1.09003 * 109.36585 * 212.07838 * 17 16 14 46 46 H 1.08996 * 108.95004 * 198.75445 * 18 17 16 47 47 H 1.08999 * 108.94558 * 80.12206 * 18 17 16 48 48 H 0.96995 * 120.00069 * 179.97438 * 23 22 20 49 49 H 1.09001 * 109.44976 * 330.68541 * 28 19 18 50 50 H 1.09006 * 109.42987 * 210.75869 * 28 19 18 51 51 H 1.08992 * 109.33174 * 304.32185 * 29 14 12 52 52 H 1.09005 * 109.32553 * 63.97236 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5954 1.9949 0.8277 5 8 1.7084 2.0781 -1.2460 6 6 2.7842 2.9909 -1.5529 7 6 4.0546 2.2040 -1.1413 8 6 3.5758 1.4552 0.1263 9 1 3.9658 0.4376 0.1409 10 6 3.9967 2.1980 1.3682 11 8 3.1582 2.6814 2.0991 12 7 5.3048 2.3259 1.6660 13 6 6.3177 1.7425 0.7828 14 6 5.7140 3.0475 2.8735 15 1 4.8175 3.3625 3.4076 16 6 6.4874 4.2940 2.4543 17 6 6.3630 5.3451 3.5296 18 6 7.5313 5.2245 4.5249 19 7 7.8539 3.8182 4.8363 20 6 9.1700 3.4464 4.9056 21 1 9.4537 2.4242 4.7033 22 6 10.1394 4.3834 5.2356 23 7 9.7886 5.5309 5.7766 24 14 11.9422 4.0160 4.9118 25 1 12.1469 3.7842 3.4594 26 1 12.7689 5.1688 5.3511 27 1 12.3436 2.8028 5.6682 28 6 6.8376 2.8170 5.0709 29 6 6.4709 2.1258 3.7345 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.6916 3.9046 -0.9659 36 1 2.8035 3.2208 -2.6183 37 1 4.8736 2.8835 -0.9057 38 1 4.3470 1.5009 -1.9212 39 1 6.6054 2.4736 0.0272 40 1 7.1928 1.4621 1.3689 41 1 5.9083 0.8578 0.2951 42 1 7.5381 4.0401 2.3139 43 1 6.0780 4.6790 1.5203 44 1 5.4206 5.2094 4.0602 45 1 6.3788 6.3342 3.0718 46 1 7.2644 5.7392 5.4479 47 1 8.4119 5.7031 4.0966 48 1 10.4660 6.1855 6.0075 49 1 5.9502 3.2917 5.4895 50 1 7.2163 2.0733 5.7722 51 1 5.8647 1.2434 3.9391 52 1 7.3858 1.8246 3.2242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948634434.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:41 Heat of formation + Delta-G solvation = -62.070909 kcal Electronic energy + Delta-G solvation = -29783.053140 eV Core-core repulsion = 25976.081477 eV Total energy + Delta-G solvation = -3806.971663 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.91384 -39.11641 -37.50710 -35.45065 -33.75544 -33.35565 -32.16513 -31.62461 -30.16818 -28.53538 -26.95633 -26.08152 -24.68729 -23.82035 -23.18480 -22.40573 -21.31787 -19.86002 -19.28085 -18.98552 -17.08123 -16.85018 -16.43938 -16.31420 -15.75457 -15.32257 -15.05477 -14.97644 -14.06781 -13.78743 -13.74570 -13.65461 -13.56722 -13.40472 -13.24959 -12.97995 -12.87682 -12.46386 -12.27856 -12.13557 -11.99175 -11.70766 -11.54685 -11.37039 -11.26569 -11.24040 -11.00310 -10.96035 -10.84474 -10.64465 -10.49776 -10.19220 -10.16654 -9.90583 -9.78221 -9.75596 -9.62532 -9.46349 -8.51573 -8.40304 -6.68361 -5.79496 -3.23591 2.61948 3.03601 3.35144 3.41634 3.41799 3.63283 4.24118 4.36272 4.47708 4.49046 4.68594 4.87156 4.98531 5.00670 5.12403 5.18564 5.19678 5.28675 5.33039 5.40623 5.46948 5.48384 5.49495 5.61017 5.62279 5.65836 5.72003 5.73848 5.77961 5.81383 5.99735 6.01466 6.02919 6.13365 6.20700 6.31742 6.43651 6.53114 6.62590 6.69596 6.75625 6.78053 6.83744 6.92139 6.96357 7.43143 7.51719 7.70453 7.80610 8.21567 8.45577 9.22647 9.89482 10.35039 11.27794 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.024935 B = 0.002904 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.664213 B = 9638.582425 C = 9721.725637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.120 4.120 3 C 0.084 3.916 4 H 0.095 0.905 5 O -0.371 6.371 6 C 0.047 3.953 7 C -0.146 4.146 8 C -0.142 4.142 9 H 0.109 0.891 10 C 0.517 3.483 11 O -0.541 6.541 12 N -0.607 5.607 13 C 0.074 3.926 14 C 0.154 3.846 15 H 0.087 0.913 16 C -0.107 4.107 17 C -0.141 4.141 18 C 0.178 3.822 19 N -0.589 5.589 20 C -0.259 4.259 21 H 0.064 0.936 22 C 0.005 3.995 23 N -0.903 5.903 24 Si 0.900 3.100 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.283 1.283 28 C 0.163 3.837 29 C -0.154 4.154 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.047 0.953 45 H 0.054 0.946 46 H 0.025 0.975 47 H 0.074 0.926 48 H 0.254 0.746 49 H 0.034 0.966 50 H 0.050 0.950 51 H 0.049 0.951 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.994 -8.575 -14.675 20.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C 0.026 3.974 4 H 0.113 0.887 5 O -0.290 6.290 6 C -0.029 4.029 7 C -0.184 4.184 8 C -0.164 4.164 9 H 0.127 0.873 10 C 0.305 3.695 11 O -0.418 6.418 12 N -0.339 5.339 13 C -0.070 4.070 14 C 0.053 3.947 15 H 0.105 0.895 16 C -0.146 4.146 17 C -0.181 4.181 18 C 0.054 3.946 19 N -0.311 5.311 20 C -0.389 4.389 21 H 0.082 0.918 22 C -0.193 4.193 23 N -0.547 5.547 24 Si 0.730 3.270 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.209 1.209 28 C 0.034 3.966 29 C -0.195 4.195 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.112 0.888 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.074 0.926 40 H 0.098 0.902 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.063 0.937 44 H 0.066 0.934 45 H 0.073 0.927 46 H 0.043 0.957 47 H 0.092 0.908 48 H 0.064 0.936 49 H 0.052 0.948 50 H 0.068 0.932 51 H 0.068 0.932 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.517 -8.185 -14.319 20.705 hybrid contribution 1.429 -0.166 -0.144 1.445 sum -11.089 -8.352 -14.463 20.047 Atomic orbital electron populations 1.21702 0.95082 1.01392 1.02422 1.21696 0.97114 0.94592 1.02344 1.22865 0.91514 0.94792 0.88196 0.88746 1.88853 1.43537 1.57094 1.39531 1.23529 0.85107 0.93003 1.01297 1.23201 0.99351 0.99889 0.95956 1.22709 0.98062 1.01313 0.94294 0.87298 1.20278 0.82543 0.80266 0.86458 1.90666 1.50630 1.49182 1.51368 1.48270 1.05275 1.54684 1.25666 1.21851 0.92903 0.97791 0.94422 1.20194 0.98855 0.91830 0.83867 0.89455 1.21253 1.01323 0.94486 0.97513 1.21989 1.00863 0.97402 0.97821 1.21016 0.94492 0.84878 0.94262 1.43662 1.01850 1.05025 1.80526 1.19135 0.82870 0.95767 1.41153 0.91829 1.25031 0.98118 0.97513 0.98678 1.70062 1.32462 1.08556 1.43648 0.86414 0.85280 0.77205 0.78101 1.21112 1.21678 1.20943 1.20560 0.92041 0.91948 0.92090 1.21870 0.99545 0.97884 1.00203 0.92618 0.92077 0.92846 0.91385 0.90862 0.92034 0.88764 0.89415 0.89476 0.92568 0.90152 0.91590 0.90451 0.93685 0.93450 0.92736 0.95721 0.90755 0.93607 0.94776 0.93200 0.93196 0.91646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.83 37.16 0.37 -0.99 16 2 C -0.12 -1.14 5.42 -26.73 -0.14 -1.28 16 3 C 0.08 0.97 3.02 -26.16 -0.08 0.89 16 4 H 0.09 1.33 6.43 -51.93 -0.33 1.00 16 5 O -0.37 -4.41 10.84 -35.23 -0.38 -4.79 16 6 C 0.05 0.46 7.72 38.21 0.29 0.76 16 7 C -0.15 -1.28 5.87 -24.72 -0.15 -1.42 16 8 C -0.14 -1.50 2.13 -90.24 -0.19 -1.69 16 9 H 0.11 0.95 6.85 -51.93 -0.36 0.60 16 10 C 0.52 7.34 6.98 -10.99 -0.08 7.26 16 11 O -0.54 -9.69 14.55 5.55 0.08 -9.61 16 12 N -0.61 -8.36 2.57 -177.48 -0.46 -8.82 16 13 C 0.07 0.78 8.55 59.85 0.51 1.29 16 14 C 0.15 2.55 1.97 -70.99 -0.14 2.41 16 15 H 0.09 1.64 6.03 -51.93 -0.31 1.33 16 16 C -0.11 -1.86 4.70 -28.02 -0.13 -1.99 16 17 C -0.14 -2.68 5.71 -27.30 -0.16 -2.83 16 18 C 0.18 4.16 4.67 -2.94 -0.01 4.14 16 19 N -0.59 -14.03 2.27 -172.09 -0.39 -14.42 16 20 C -0.26 -6.78 9.44 -15.06 -0.14 -6.93 16 21 H 0.06 1.63 7.88 -52.49 -0.41 1.22 16 22 C 0.01 0.14 4.87 -17.43 -0.08 0.06 16 23 N -0.90 -25.60 11.01 55.49 0.61 -24.99 16 24 Si 0.90 21.11 29.58 -169.99 -5.03 16.08 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 C 0.16 3.32 5.65 -4.09 -0.02 3.30 16 29 C -0.15 -2.65 4.85 -28.59 -0.14 -2.79 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.59 7.91 -51.93 -0.41 0.18 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.78 6.12 -51.93 -0.32 0.46 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.54 7.21 -51.93 -0.37 0.16 16 40 H 0.08 0.92 6.38 -51.93 -0.33 0.59 16 41 H 0.07 0.53 6.25 -51.93 -0.32 0.21 16 42 H 0.08 1.49 7.48 -51.93 -0.39 1.10 16 43 H 0.04 0.72 8.05 -51.93 -0.42 0.31 16 44 H 0.05 0.89 7.31 -51.93 -0.38 0.51 16 45 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.02 0.63 8.03 -51.93 -0.42 0.21 16 47 H 0.07 1.92 6.33 -51.93 -0.33 1.59 16 48 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 49 H 0.03 0.69 8.06 -51.93 -0.42 0.27 16 50 H 0.05 1.03 7.99 -51.93 -0.41 0.62 16 51 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 52 H 0.06 1.16 6.64 -51.93 -0.34 0.82 16 LS Contribution 386.03 15.07 5.82 5.82 Total: -1.00 -30.20 386.03 -9.27 -39.47 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -9.22 Total: 1.08 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -0.30 Total: 0.19 kcal Atomic # 7 Polarization: -47.99 SS G_CDS: -0.24 Total: -48.23 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -0.30 Total: -14.40 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.20 -9.27 -39.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948634434.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.599 kcal (2) G-P(sol) polarization free energy of solvation -30.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds