Wall clock time and date at job start Tue Mar 31 2020 14:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46990 * 2 1 4 4 H 1.08996 * 109.99158 * 53.91163 * 3 2 1 5 5 O 1.43751 * 109.87383 * 292.82804 * 3 2 1 6 6 C 1.44388 * 106.97034 * 214.06284 * 5 3 2 7 7 C 1.54999 * 103.48970 * 40.06460 * 6 5 3 8 8 C 1.54099 * 109.87524 * 175.00042 * 3 2 1 9 9 H 1.08995 * 110.49025 * 2.64088 * 8 3 2 10 10 C 1.50702 * 110.48692 * 240.12701 * 8 3 2 11 11 O 1.21288 * 119.99725 * 359.97438 * 10 8 3 12 12 N 1.34769 * 120.00276 * 180.02562 * 10 8 3 13 13 C 1.46498 * 120.00094 * 359.97438 * 12 10 8 14 14 C 1.46500 * 120.00271 * 180.02562 * 12 10 8 15 15 H 1.09005 * 108.44486 * 2.30269 * 14 12 10 16 16 C 1.52567 * 108.51187 * 244.76385 * 14 12 10 17 17 C 1.50880 * 109.36213 * 153.73276 * 16 14 12 18 18 C 1.53944 * 110.09899 * 91.88280 * 17 16 14 19 19 N 1.47609 * 112.14061 * 319.44074 * 18 17 16 20 20 C 1.36936 * 118.64548 * 137.84735 * 19 18 17 21 21 H 1.07998 * 119.99803 * 206.53127 * 20 19 18 22 22 C 1.38807 * 120.00188 * 26.52188 * 20 19 18 23 23 N 1.31624 * 120.00018 * 15.66508 * 22 20 19 24 24 Si 1.86804 * 120.00232 * 195.67022 * 22 20 19 25 25 H 1.48502 * 109.47015 * 59.99918 * 24 22 20 26 26 H 1.48504 * 109.47049 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.46758 * 299.99842 * 24 22 20 28 28 C 1.44578 * 122.71096 * 317.86552 * 19 18 17 29 29 C 1.47092 * 108.51598 * 119.99194 * 14 12 10 30 30 H 1.08996 * 109.47423 * 299.99996 * 1 2 3 31 31 H 1.09003 * 109.46636 * 60.00510 * 1 2 3 32 32 H 1.09002 * 109.47013 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46777 * 239.99763 * 2 1 3 34 34 H 1.09002 * 109.46670 * 120.00042 * 2 1 3 35 35 H 1.09000 * 110.61712 * 281.55950 * 6 5 3 36 36 H 1.09002 * 110.74863 * 158.62806 * 6 5 3 37 37 H 1.08998 * 110.90089 * 204.77754 * 7 6 5 38 38 H 1.08992 * 110.93570 * 81.18718 * 7 6 5 39 39 H 1.09003 * 109.47091 * 90.00164 * 13 12 10 40 40 H 1.08995 * 109.47445 * 210.00416 * 13 12 10 41 41 H 1.09001 * 109.47050 * 330.00346 * 13 12 10 42 42 H 1.09004 * 109.49149 * 273.69576 * 16 14 12 43 43 H 1.09006 * 109.49029 * 33.76322 * 16 14 12 44 44 H 1.08999 * 109.36269 * 331.69130 * 17 16 14 45 45 H 1.09003 * 109.36585 * 212.07838 * 17 16 14 46 46 H 1.08996 * 108.95004 * 198.75445 * 18 17 16 47 47 H 1.08999 * 108.94558 * 80.12206 * 18 17 16 48 48 H 0.96995 * 120.00069 * 179.97438 * 23 22 20 49 49 H 1.09001 * 109.44976 * 330.68541 * 28 19 18 50 50 H 1.09006 * 109.42987 * 210.75869 * 28 19 18 51 51 H 1.08992 * 109.33174 * 304.32185 * 29 14 12 52 52 H 1.09005 * 109.32553 * 63.97236 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5954 1.9949 0.8277 5 8 1.7084 2.0781 -1.2460 6 6 2.7842 2.9909 -1.5529 7 6 4.0546 2.2040 -1.1413 8 6 3.5758 1.4552 0.1263 9 1 3.9658 0.4376 0.1409 10 6 3.9967 2.1980 1.3682 11 8 3.1582 2.6814 2.0991 12 7 5.3048 2.3259 1.6660 13 6 6.3177 1.7425 0.7828 14 6 5.7140 3.0475 2.8735 15 1 4.8175 3.3625 3.4076 16 6 6.4874 4.2940 2.4543 17 6 6.3630 5.3451 3.5296 18 6 7.5313 5.2245 4.5249 19 7 7.8539 3.8182 4.8363 20 6 9.1700 3.4464 4.9056 21 1 9.4537 2.4242 4.7033 22 6 10.1394 4.3834 5.2356 23 7 9.7886 5.5309 5.7766 24 14 11.9422 4.0160 4.9118 25 1 12.1469 3.7842 3.4594 26 1 12.7689 5.1688 5.3511 27 1 12.3436 2.8028 5.6682 28 6 6.8376 2.8170 5.0709 29 6 6.4709 2.1258 3.7345 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.6916 3.9046 -0.9659 36 1 2.8035 3.2208 -2.6183 37 1 4.8736 2.8835 -0.9057 38 1 4.3470 1.5009 -1.9212 39 1 6.6054 2.4736 0.0272 40 1 7.1928 1.4621 1.3689 41 1 5.9083 0.8578 0.2951 42 1 7.5381 4.0401 2.3139 43 1 6.0780 4.6790 1.5203 44 1 5.4206 5.2094 4.0602 45 1 6.3788 6.3342 3.0718 46 1 7.2644 5.7392 5.4479 47 1 8.4119 5.7031 4.0966 48 1 10.4660 6.1855 6.0075 49 1 5.9502 3.2917 5.4895 50 1 7.2163 2.0733 5.7722 51 1 5.8647 1.2434 3.9391 52 1 7.3858 1.8246 3.2242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948634434.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:40 Heat of formation + Delta-G solvation = -78.882787 kcal Electronic energy + Delta-G solvation = -29783.782158 eV Core-core repulsion = 25976.081477 eV Total energy + Delta-G solvation = -3807.700681 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.93619 -40.24614 -38.89193 -36.86601 -34.80507 -34.50529 -33.44341 -33.24049 -31.72323 -29.32536 -28.12637 -27.63856 -26.07543 -25.33145 -24.44693 -23.31837 -22.18593 -21.18644 -21.01084 -20.11690 -18.56539 -18.10325 -17.68268 -17.16142 -16.99948 -16.57454 -16.35057 -16.02922 -15.75416 -15.34264 -15.22398 -14.80279 -14.49357 -14.39273 -14.33346 -14.08336 -14.00245 -13.78954 -13.66299 -13.24978 -13.08655 -13.00687 -12.88595 -12.66622 -12.47306 -12.37119 -12.29801 -12.11633 -12.02922 -11.95768 -11.76752 -11.76316 -11.68909 -11.55871 -11.41353 -11.36121 -10.79856 -10.54084 -10.42295 -9.66242 -8.65334 -7.83059 -5.29874 1.49229 1.50443 1.55555 1.57316 1.94888 2.53865 2.85180 3.30986 3.44985 3.47681 3.64314 3.67625 3.80061 3.98599 4.08797 4.12510 4.23119 4.24893 4.29241 4.36678 4.41457 4.43172 4.45120 4.54011 4.65835 4.68002 4.71534 4.79603 4.82412 4.85650 4.90962 4.96075 4.99203 5.01868 5.07327 5.08214 5.11543 5.13093 5.23786 5.26548 5.29317 5.40864 5.46177 5.55704 5.60918 5.68870 5.80286 5.90361 6.42208 6.43627 7.13019 7.20219 7.95204 8.36442 9.22510 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.024935 B = 0.002904 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1122.664213 B = 9638.582425 C = 9721.725637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.082 3.918 4 H 0.059 0.941 5 O -0.384 6.384 6 C 0.039 3.961 7 C -0.137 4.137 8 C -0.134 4.134 9 H 0.138 0.862 10 C 0.513 3.487 11 O -0.586 6.586 12 N -0.605 5.605 13 C 0.067 3.933 14 C 0.160 3.840 15 H 0.064 0.936 16 C -0.095 4.095 17 C -0.130 4.130 18 C 0.191 3.809 19 N -0.601 5.601 20 C -0.261 4.261 21 H 0.070 0.930 22 C -0.049 4.049 23 N -0.938 5.938 24 Si 0.964 3.036 25 H -0.275 1.275 26 H -0.299 1.299 27 H -0.277 1.277 28 C 0.158 3.842 29 C -0.134 4.134 30 H 0.043 0.957 31 H 0.052 0.948 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.041 0.959 36 H 0.119 0.881 37 H 0.089 0.911 38 H 0.118 0.882 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.099 0.901 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.047 0.953 45 H 0.069 0.931 46 H -0.010 1.010 47 H 0.045 0.955 48 H 0.248 0.752 49 H 0.031 0.969 50 H 0.045 0.955 51 H 0.064 0.936 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.628 -10.926 -17.510 23.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C 0.024 3.976 4 H 0.077 0.923 5 O -0.304 6.304 6 C -0.037 4.037 7 C -0.174 4.174 8 C -0.155 4.155 9 H 0.156 0.844 10 C 0.302 3.698 11 O -0.467 6.467 12 N -0.336 5.336 13 C -0.075 4.075 14 C 0.058 3.942 15 H 0.083 0.917 16 C -0.134 4.134 17 C -0.170 4.170 18 C 0.066 3.934 19 N -0.323 5.323 20 C -0.391 4.391 21 H 0.087 0.913 22 C -0.244 4.244 23 N -0.584 5.584 24 Si 0.792 3.208 25 H -0.201 1.201 26 H -0.226 1.226 27 H -0.203 1.203 28 C 0.030 3.970 29 C -0.174 4.174 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.060 0.940 36 H 0.137 0.863 37 H 0.108 0.892 38 H 0.137 0.863 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.117 0.883 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.008 0.992 47 H 0.064 0.936 48 H 0.057 0.943 49 H 0.049 0.951 50 H 0.063 0.937 51 H 0.083 0.917 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.157 -10.581 -17.188 23.562 hybrid contribution 1.229 0.578 0.783 1.567 sum -10.928 -10.003 -16.405 22.104 Atomic orbital electron populations 1.21698 0.95239 1.02190 1.01464 1.21702 0.97046 0.93274 1.03389 1.22801 0.92187 0.95495 0.87122 0.92306 1.88847 1.44722 1.57449 1.39353 1.23698 0.85365 0.92195 1.02471 1.23243 0.98521 1.00112 0.95549 1.22727 0.97374 1.02353 0.93047 0.84437 1.20945 0.81983 0.79741 0.87082 1.90658 1.51849 1.51068 1.53091 1.48221 1.06048 1.54286 1.25046 1.22123 0.91885 0.99378 0.94093 1.19835 0.97449 0.91786 0.85155 0.91738 1.21109 1.00520 0.94288 0.97436 1.21840 0.98674 0.99076 0.97382 1.20741 0.94743 0.84359 0.93559 1.43840 1.01998 1.05559 1.80911 1.19465 0.83940 0.95933 1.39771 0.91273 1.25775 1.01979 0.97574 0.99114 1.70236 1.33246 1.09548 1.45392 0.85396 0.80463 0.76635 0.78264 1.20057 1.22571 1.20312 1.20691 0.91055 0.91248 0.94007 1.21588 0.99811 0.97964 0.98086 0.93811 0.92837 0.91139 0.89653 0.90280 0.94046 0.86350 0.89231 0.86325 0.91082 0.90897 0.88306 0.91934 0.91948 0.93439 0.91275 0.99216 0.93606 0.94306 0.95075 0.93696 0.91714 0.91565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.83 71.98 0.71 -1.82 16 2 C -0.12 -1.94 5.42 30.60 0.17 -1.78 16 3 C 0.08 1.77 3.02 30.97 0.09 1.86 16 4 H 0.06 1.70 6.43 -2.39 -0.02 1.69 16 5 O -0.38 -8.51 10.84 -148.98 -1.61 -10.13 16 6 C 0.04 0.68 7.72 72.67 0.56 1.24 16 7 C -0.14 -1.86 5.87 31.90 0.19 -1.67 16 8 C -0.13 -2.42 2.13 -10.55 -0.02 -2.45 16 9 H 0.14 1.73 6.85 -2.39 -0.02 1.72 16 10 C 0.51 13.70 6.98 87.66 0.61 14.31 16 11 O -0.59 -21.09 14.55 -3.05 -0.04 -21.14 16 12 N -0.61 -15.27 2.57 -833.82 -2.14 -17.41 16 13 C 0.07 1.16 8.55 127.77 1.09 2.25 16 14 C 0.16 5.16 1.97 43.01 0.08 5.24 16 15 H 0.06 2.42 6.03 -2.38 -0.01 2.41 16 16 C -0.10 -3.20 4.70 29.76 0.14 -3.06 16 17 C -0.13 -4.97 5.71 30.22 0.17 -4.80 16 18 C 0.19 9.21 4.67 86.49 0.40 9.62 16 19 N -0.60 -29.07 2.27 -698.38 -1.59 -30.66 16 20 C -0.26 -13.70 9.44 84.03 0.79 -12.90 16 21 H 0.07 3.50 7.88 -2.91 -0.02 3.48 16 22 C -0.05 -2.68 4.87 84.86 0.41 -2.27 16 23 N -0.94 -54.85 11.01 21.65 0.24 -54.61 16 24 Si 0.96 43.61 29.58 68.60 2.03 45.64 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 27 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 28 C 0.16 6.46 5.65 87.37 0.49 6.96 16 29 C -0.13 -4.44 4.85 29.39 0.14 -4.30 16 30 H 0.04 0.82 8.14 -2.39 -0.02 0.81 16 31 H 0.05 0.98 7.91 -2.39 -0.02 0.96 16 32 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.12 1.45 8.14 -2.39 -0.02 1.44 16 37 H 0.09 1.23 6.12 -2.39 -0.01 1.22 16 38 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.07 1.06 7.21 -2.39 -0.02 1.04 16 40 H 0.07 1.42 6.38 -2.39 -0.02 1.40 16 41 H 0.10 1.07 6.25 -2.39 -0.01 1.06 16 42 H 0.06 2.33 7.48 -2.38 -0.02 2.31 16 43 H 0.06 1.89 8.05 -2.38 -0.02 1.87 16 44 H 0.05 1.81 7.31 -2.39 -0.02 1.79 16 45 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 46 H -0.01 -0.56 8.03 -2.39 -0.02 -0.58 16 47 H 0.05 2.45 6.33 -2.39 -0.02 2.44 16 48 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 49 H 0.03 1.28 8.06 -2.39 -0.02 1.26 16 50 H 0.04 1.86 7.99 -2.38 -0.02 1.84 16 51 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 52 H 0.07 2.22 6.64 -2.38 -0.02 2.20 16 Total: -1.00 -68.32 386.03 3.81 -64.52 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.88 Total: 17.35 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 6.04 Total: 6.44 kcal Atomic # 7 Polarization: -99.19 SS G_CDS: -3.49 Total: -102.68 kcal Atomic # 8 Polarization: -29.61 SS G_CDS: -1.66 Total: -31.26 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -68.32 3.81 -64.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948634434.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.367 kcal (2) G-P(sol) polarization free energy of solvation -68.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds