Wall clock time and date at job start Tue Mar 31 2020 14:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47284 * 2 1 4 4 H 1.09003 * 110.27491 * 55.63258 * 3 2 1 5 5 O 1.43654 * 110.31221 * 293.55002 * 3 2 1 6 6 C 1.43237 * 109.96793 * 216.65626 * 5 3 2 7 7 C 1.54378 * 107.59249 * 1.70984 * 6 5 3 8 8 C 1.54941 * 110.31076 * 177.83301 * 3 2 1 9 9 H 1.08997 * 111.12316 * 37.44411 * 8 3 2 10 10 C 1.50701 * 111.12405 * 273.28000 * 8 3 2 11 11 O 1.21280 * 120.00290 * 359.97438 * 10 8 3 12 12 N 1.34781 * 119.99776 * 179.97438 * 10 8 3 13 13 C 1.46496 * 120.00011 * 179.97438 * 12 10 8 14 14 C 1.53000 * 109.47450 * 180.02562 * 13 12 10 15 15 H 1.08998 * 109.44806 * 294.95481 * 14 13 12 16 16 C 1.54862 * 109.45154 * 175.00098 * 14 13 12 17 17 C 1.47091 * 110.32162 * 168.69392 * 16 14 13 18 18 C 1.52571 * 114.32346 * 62.80574 * 17 16 14 19 19 C 1.50882 * 109.35614 * 274.98533 * 18 17 16 20 20 C 1.53953 * 110.09522 * 91.88941 * 19 18 17 21 21 N 1.44578 * 109.44527 * 54.87165 * 14 13 12 22 22 C 1.36940 * 118.64417 * 30.76531 * 21 14 13 23 23 H 1.07991 * 119.99929 * 324.69958 * 22 21 14 24 24 C 1.38815 * 119.99646 * 144.70010 * 22 21 14 25 25 N 1.31624 * 119.99834 * 184.85563 * 24 22 21 26 26 Si 1.86802 * 120.00305 * 4.85263 * 24 22 21 27 27 H 1.48500 * 109.47000 * 94.81085 * 26 24 22 28 28 H 1.48501 * 109.47032 * 214.81293 * 26 24 22 29 29 H 1.48496 * 109.46927 * 334.81400 * 26 24 22 30 30 H 1.08991 * 109.47528 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46776 * 59.99937 * 1 2 3 32 32 H 1.09001 * 109.47502 * 300.00298 * 1 2 3 33 33 H 1.08993 * 109.46693 * 120.00234 * 2 1 3 34 34 H 1.08998 * 109.46843 * 240.00021 * 2 1 3 35 35 H 1.09007 * 109.82716 * 121.22149 * 6 5 3 36 36 H 1.08996 * 109.83326 * 242.09988 * 6 5 3 37 37 H 1.08998 * 110.84997 * 139.54196 * 7 6 5 38 38 H 1.08998 * 110.84612 * 262.96489 * 7 6 5 39 39 H 0.97000 * 120.00276 * 0.02562 * 12 10 8 40 40 H 1.09002 * 109.47409 * 300.00524 * 13 12 10 41 41 H 1.09005 * 109.47184 * 60.00396 * 13 12 10 42 42 H 1.09000 * 109.33010 * 288.95882 * 16 14 13 43 43 H 1.09002 * 109.32901 * 48.43425 * 16 14 13 44 44 H 1.09002 * 108.51068 * 184.05313 * 17 16 14 45 45 H 1.08996 * 108.51537 * 301.70440 * 17 16 14 46 46 H 1.08993 * 109.49296 * 34.95211 * 18 17 16 47 47 H 1.08999 * 109.48943 * 155.02022 * 18 17 16 48 48 H 1.09001 * 109.36455 * 212.07479 * 19 18 17 49 49 H 1.09001 * 109.36983 * 331.69620 * 19 18 17 50 50 H 1.09002 * 108.94481 * 80.12103 * 20 19 18 51 51 H 1.08999 * 108.94543 * 198.83878 * 20 19 18 52 52 H 0.96999 * 119.99799 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6218 1.9910 0.8440 5 8 1.6988 2.0920 -1.2350 6 6 2.7562 2.9726 -1.6330 7 6 3.8857 2.8476 -0.5881 8 6 3.5883 1.4654 0.0549 9 1 4.0145 0.6564 -0.5382 10 6 4.0822 1.4108 1.4777 11 8 3.2888 1.3578 2.3934 12 7 5.4057 1.4208 1.7325 13 6 5.8858 1.3682 3.1155 14 6 7.4155 1.3927 3.1257 15 1 7.7962 0.4867 2.6543 16 6 7.9204 1.4645 4.5880 17 6 9.3697 1.2189 4.6406 18 6 10.2099 2.2548 3.8998 19 6 10.2940 1.8797 2.4407 20 6 9.1599 2.5608 1.6533 21 7 7.8832 2.5486 2.3939 22 6 7.1098 3.6786 2.3875 23 1 6.0331 3.5959 2.3808 24 6 7.7099 4.9304 2.3896 25 7 6.9696 6.0149 2.4799 26 14 9.5680 5.0756 2.2642 27 1 9.9539 5.2803 0.8449 28 1 10.0299 6.2313 3.0744 29 1 10.1973 3.8308 2.7737 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.1281 2.6832 -2.6159 36 1 2.3908 3.9990 -1.6635 37 1 4.8628 2.8485 -1.0710 38 1 3.8197 3.6453 0.1518 39 1 6.0403 1.4635 1.0001 40 1 5.5052 2.2291 3.6652 41 1 5.5336 0.4510 3.5878 42 1 7.7069 2.4527 4.9953 43 1 7.4051 0.7120 5.1849 44 1 9.6805 1.2043 5.6853 45 1 9.5708 0.2393 4.2071 46 1 9.7459 3.2362 3.9968 47 1 11.2125 2.2824 4.3265 48 1 11.2556 2.2004 2.0399 49 1 10.2051 0.7980 2.3399 50 1 9.4413 3.5941 1.4499 51 1 9.0234 2.0386 0.7064 52 1 7.3889 6.8896 2.4817 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968955527.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:37 Heat of formation + Delta-G solvation = -26.168050 kcal Electronic energy + Delta-G solvation = -30145.318820 eV Core-core repulsion = 26339.904021 eV Total energy + Delta-G solvation = -3805.414798 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.22706 -39.00586 -38.01172 -34.84367 -33.59678 -33.45584 -32.60584 -31.78888 -31.22741 -28.41950 -27.33548 -25.82749 -24.12539 -23.54611 -22.63491 -21.83496 -20.70879 -20.40151 -19.76598 -19.23899 -17.58954 -16.57931 -16.16820 -15.82109 -15.63569 -15.41301 -14.99866 -14.70955 -14.64514 -14.19288 -13.85283 -13.77283 -13.35356 -13.21709 -12.99572 -12.89171 -12.81137 -12.26351 -12.14063 -12.09087 -11.94260 -11.69708 -11.59720 -11.36587 -11.23357 -10.94234 -10.83173 -10.72540 -10.68309 -10.56847 -10.29234 -10.16046 -9.93253 -9.90550 -9.58319 -9.48280 -9.25871 -8.62857 -8.44939 -8.32143 -6.93590 -5.93338 -3.46937 3.02720 3.27880 3.32874 3.50404 3.60430 3.90621 4.48706 4.60554 4.69984 4.76691 4.96766 5.17165 5.19773 5.21724 5.24359 5.31832 5.32267 5.40342 5.43876 5.46161 5.53746 5.67121 5.69170 5.78773 5.81320 5.87391 5.90107 5.92995 6.02430 6.05394 6.12020 6.15527 6.20886 6.22717 6.31118 6.33686 6.36683 6.38605 6.47598 6.59109 6.60618 6.66899 6.76174 6.90289 6.99085 7.07460 7.10925 8.02796 8.07367 8.36296 8.69490 8.92777 9.69060 10.00107 11.18753 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.016464 B = 0.003979 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.238719 B = 7034.804325 C = 7967.243376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.118 4.118 3 C 0.101 3.899 4 H 0.086 0.914 5 O -0.381 6.381 6 C 0.054 3.946 7 C -0.142 4.142 8 C -0.142 4.142 9 H 0.105 0.895 10 C 0.524 3.476 11 O -0.551 6.551 12 N -0.698 5.698 13 C 0.123 3.877 14 C 0.183 3.817 15 H 0.048 0.952 16 C -0.137 4.137 17 C -0.102 4.102 18 C -0.119 4.119 19 C -0.128 4.128 20 C 0.146 3.854 21 N -0.602 5.602 22 C -0.278 4.278 23 H 0.096 0.904 24 C 0.029 3.971 25 N -0.912 5.912 26 Si 0.831 3.169 27 H -0.297 1.297 28 H -0.316 1.316 29 H -0.190 1.190 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.076 0.924 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.404 0.596 40 H 0.078 0.922 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.050 0.950 44 H 0.044 0.956 45 H 0.046 0.954 46 H 0.091 0.909 47 H 0.045 0.955 48 H 0.054 0.946 49 H 0.056 0.944 50 H 0.040 0.960 51 H 0.021 0.979 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.221 -12.115 -4.605 13.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C 0.043 3.957 4 H 0.104 0.896 5 O -0.301 6.301 6 C -0.023 4.023 7 C -0.180 4.180 8 C -0.163 4.163 9 H 0.123 0.877 10 C 0.309 3.691 11 O -0.430 6.430 12 N -0.348 5.348 13 C -0.001 4.001 14 C 0.074 3.926 15 H 0.067 0.933 16 C -0.178 4.178 17 C -0.139 4.139 18 C -0.157 4.157 19 C -0.167 4.167 20 C 0.022 3.978 21 N -0.326 5.326 22 C -0.407 4.407 23 H 0.113 0.887 24 C -0.171 4.171 25 N -0.554 5.554 26 Si 0.665 3.335 27 H -0.227 1.227 28 H -0.246 1.246 29 H -0.114 1.114 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.095 0.905 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.239 0.761 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.069 0.931 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.109 0.891 47 H 0.064 0.936 48 H 0.072 0.928 49 H 0.075 0.925 50 H 0.058 0.942 51 H 0.039 0.961 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.961 -12.037 -4.054 12.852 hybrid contribution 1.740 0.742 -0.469 1.949 sum -0.220 -11.294 -4.523 12.168 Atomic orbital electron populations 1.21681 0.95307 1.01155 1.02255 1.21627 0.96857 0.94728 1.02331 1.22826 0.91197 0.94188 0.87439 0.89616 1.88378 1.41835 1.59570 1.40299 1.23088 0.87266 0.94425 0.97497 1.23072 1.00019 0.96027 0.98850 1.22988 0.97929 1.00074 0.95348 0.87719 1.19953 0.82773 0.76433 0.89968 1.90667 1.55053 1.50750 1.46493 1.45774 1.06297 1.72870 1.09834 1.21585 0.94845 1.01201 0.82487 1.20473 0.91003 0.90044 0.91033 0.93350 1.21341 0.95464 1.02229 0.98765 1.20326 0.96099 0.98282 0.99202 1.21427 0.98556 1.01060 0.94608 1.21803 0.98558 0.99718 0.96612 1.21480 0.86086 0.97217 0.93034 1.43936 1.20173 1.12341 1.56195 1.19042 0.91596 0.82441 1.47581 0.88679 1.25385 0.97522 0.95844 0.98314 1.69768 1.35056 0.97584 1.52984 0.88269 0.88985 0.79006 0.77225 1.22699 1.24636 1.11407 0.93068 0.92227 0.92662 0.90504 0.91741 0.91385 0.91213 0.89132 0.89209 0.76091 0.90363 0.92735 0.90978 0.93112 0.93713 0.93555 0.89109 0.93615 0.92763 0.92517 0.94226 0.96076 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.83 37.16 0.37 -1.31 16 2 C -0.12 -1.47 5.68 -26.73 -0.15 -1.62 16 3 C 0.10 1.46 2.57 -25.71 -0.07 1.39 16 4 H 0.09 1.43 7.38 -51.93 -0.38 1.05 16 5 O -0.38 -5.52 10.69 -35.23 -0.38 -5.90 16 6 C 0.05 0.69 7.79 37.88 0.30 0.98 16 7 C -0.14 -1.99 6.49 -24.78 -0.16 -2.15 16 8 C -0.14 -1.99 2.90 -89.52 -0.26 -2.25 16 9 H 0.10 1.24 8.06 -51.93 -0.42 0.82 16 10 C 0.52 8.95 7.16 -10.98 -0.08 8.88 16 11 O -0.55 -11.18 15.72 5.56 0.09 -11.09 16 12 N -0.70 -11.64 4.24 -60.29 -0.26 -11.89 16 13 C 0.12 2.16 4.37 -4.04 -0.02 2.14 16 14 C 0.18 3.08 2.19 -67.97 -0.15 2.93 16 15 H 0.05 0.75 8.06 -51.93 -0.42 0.33 16 16 C -0.14 -2.21 5.06 -28.59 -0.14 -2.36 16 17 C -0.10 -1.50 5.16 -29.79 -0.15 -1.65 16 18 C -0.12 -1.94 4.70 -28.01 -0.13 -2.07 16 19 C -0.13 -2.00 4.85 -27.30 -0.13 -2.14 16 20 C 0.15 2.69 5.41 -2.94 -0.02 2.67 16 21 N -0.60 -11.83 1.64 -164.47 -0.27 -12.10 16 22 C -0.28 -6.77 8.83 -15.06 -0.13 -6.91 16 23 H 0.10 2.55 5.78 -52.49 -0.30 2.24 16 24 C 0.03 0.77 5.50 -17.43 -0.10 0.68 16 25 N -0.91 -26.96 13.97 55.49 0.78 -26.18 16 26 Si 0.83 19.33 23.40 -169.99 -3.98 15.35 16 27 H -0.30 -7.16 7.11 56.52 0.40 -6.75 16 28 H -0.32 -8.03 7.11 56.52 0.40 -7.62 16 29 H -0.19 -3.74 1.49 56.52 0.08 -3.65 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.69 7.91 -51.93 -0.41 0.28 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 38 H 0.09 1.51 8.03 -51.93 -0.42 1.09 16 39 H 0.40 6.38 8.07 -40.82 -0.33 6.05 16 40 H 0.08 1.65 7.06 -51.93 -0.37 1.28 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 43 H 0.05 0.72 8.11 -51.93 -0.42 0.30 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.62 7.35 -51.93 -0.38 0.24 16 46 H 0.09 1.76 4.49 -51.93 -0.23 1.52 16 47 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.05 0.79 8.11 -51.93 -0.42 0.37 16 49 H 0.06 0.80 7.31 -51.93 -0.38 0.42 16 50 H 0.04 0.83 1.52 -51.93 -0.08 0.75 16 51 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 52 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 377.10 15.07 5.68 5.68 Total: -1.00 -29.71 377.10 -8.85 -38.56 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -9.49 Total: 10.35 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -1.03 Total: -2.78 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.25 Total: -50.17 kcal Atomic # 8 Polarization: -16.71 SS G_CDS: -0.29 Total: -16.99 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -3.98 Total: 15.35 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -29.71 -8.85 -38.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968955527.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.396 kcal (2) G-P(sol) polarization free energy of solvation -29.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds