Wall clock time and date at job start Tue Mar 31 2020 14:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47284 * 2 1 4 4 H 1.09003 * 110.27491 * 55.63258 * 3 2 1 5 5 O 1.43654 * 110.31221 * 293.55002 * 3 2 1 6 6 C 1.43237 * 109.96793 * 216.65626 * 5 3 2 7 7 C 1.54378 * 107.59249 * 1.70984 * 6 5 3 8 8 C 1.54941 * 110.31076 * 177.83301 * 3 2 1 9 9 H 1.08997 * 111.12316 * 37.44411 * 8 3 2 10 10 C 1.50701 * 111.12405 * 273.28000 * 8 3 2 11 11 O 1.21280 * 120.00290 * 359.97438 * 10 8 3 12 12 N 1.34781 * 119.99776 * 179.97438 * 10 8 3 13 13 C 1.46496 * 120.00011 * 179.97438 * 12 10 8 14 14 C 1.53000 * 109.47450 * 180.02562 * 13 12 10 15 15 H 1.08998 * 109.44806 * 294.95481 * 14 13 12 16 16 C 1.54862 * 109.45154 * 175.00098 * 14 13 12 17 17 C 1.47091 * 110.32162 * 168.69392 * 16 14 13 18 18 C 1.52571 * 114.32346 * 62.80574 * 17 16 14 19 19 C 1.50882 * 109.35614 * 274.98533 * 18 17 16 20 20 C 1.53953 * 110.09522 * 91.88941 * 19 18 17 21 21 N 1.44578 * 109.44527 * 54.87165 * 14 13 12 22 22 C 1.36940 * 118.64417 * 30.76531 * 21 14 13 23 23 H 1.07991 * 119.99929 * 324.69958 * 22 21 14 24 24 C 1.38815 * 119.99646 * 144.70010 * 22 21 14 25 25 N 1.31624 * 119.99834 * 184.85563 * 24 22 21 26 26 Si 1.86802 * 120.00305 * 4.85263 * 24 22 21 27 27 H 1.48500 * 109.47000 * 94.81085 * 26 24 22 28 28 H 1.48501 * 109.47032 * 214.81293 * 26 24 22 29 29 H 1.48496 * 109.46927 * 334.81400 * 26 24 22 30 30 H 1.08991 * 109.47528 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46776 * 59.99937 * 1 2 3 32 32 H 1.09001 * 109.47502 * 300.00298 * 1 2 3 33 33 H 1.08993 * 109.46693 * 120.00234 * 2 1 3 34 34 H 1.08998 * 109.46843 * 240.00021 * 2 1 3 35 35 H 1.09007 * 109.82716 * 121.22149 * 6 5 3 36 36 H 1.08996 * 109.83326 * 242.09988 * 6 5 3 37 37 H 1.08998 * 110.84997 * 139.54196 * 7 6 5 38 38 H 1.08998 * 110.84612 * 262.96489 * 7 6 5 39 39 H 0.97000 * 120.00276 * 0.02562 * 12 10 8 40 40 H 1.09002 * 109.47409 * 300.00524 * 13 12 10 41 41 H 1.09005 * 109.47184 * 60.00396 * 13 12 10 42 42 H 1.09000 * 109.33010 * 288.95882 * 16 14 13 43 43 H 1.09002 * 109.32901 * 48.43425 * 16 14 13 44 44 H 1.09002 * 108.51068 * 184.05313 * 17 16 14 45 45 H 1.08996 * 108.51537 * 301.70440 * 17 16 14 46 46 H 1.08993 * 109.49296 * 34.95211 * 18 17 16 47 47 H 1.08999 * 109.48943 * 155.02022 * 18 17 16 48 48 H 1.09001 * 109.36455 * 212.07479 * 19 18 17 49 49 H 1.09001 * 109.36983 * 331.69620 * 19 18 17 50 50 H 1.09002 * 108.94481 * 80.12103 * 20 19 18 51 51 H 1.08999 * 108.94543 * 198.83878 * 20 19 18 52 52 H 0.96999 * 119.99799 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6218 1.9910 0.8440 5 8 1.6988 2.0920 -1.2350 6 6 2.7562 2.9726 -1.6330 7 6 3.8857 2.8476 -0.5881 8 6 3.5883 1.4654 0.0549 9 1 4.0145 0.6564 -0.5382 10 6 4.0822 1.4108 1.4777 11 8 3.2888 1.3578 2.3934 12 7 5.4057 1.4208 1.7325 13 6 5.8858 1.3682 3.1155 14 6 7.4155 1.3927 3.1257 15 1 7.7962 0.4867 2.6543 16 6 7.9204 1.4645 4.5880 17 6 9.3697 1.2189 4.6406 18 6 10.2099 2.2548 3.8998 19 6 10.2940 1.8797 2.4407 20 6 9.1599 2.5608 1.6533 21 7 7.8832 2.5486 2.3939 22 6 7.1098 3.6786 2.3875 23 1 6.0331 3.5959 2.3808 24 6 7.7099 4.9304 2.3896 25 7 6.9696 6.0149 2.4799 26 14 9.5680 5.0756 2.2642 27 1 9.9539 5.2803 0.8449 28 1 10.0299 6.2313 3.0744 29 1 10.1973 3.8308 2.7737 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.1281 2.6832 -2.6159 36 1 2.3908 3.9990 -1.6635 37 1 4.8628 2.8485 -1.0710 38 1 3.8197 3.6453 0.1518 39 1 6.0403 1.4635 1.0001 40 1 5.5052 2.2291 3.6652 41 1 5.5336 0.4510 3.5878 42 1 7.7069 2.4527 4.9953 43 1 7.4051 0.7120 5.1849 44 1 9.6805 1.2043 5.6853 45 1 9.5708 0.2393 4.2071 46 1 9.7459 3.2362 3.9968 47 1 11.2125 2.2824 4.3265 48 1 11.2556 2.2004 2.0399 49 1 10.2051 0.7980 2.3399 50 1 9.4413 3.5941 1.4499 51 1 9.0234 2.0386 0.7064 52 1 7.3889 6.8896 2.4817 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968955527.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:36 Heat of formation + Delta-G solvation = -45.777150 kcal Electronic energy + Delta-G solvation = -30146.169134 eV Core-core repulsion = 26339.904021 eV Total energy + Delta-G solvation = -3806.265113 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 324.220 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.51888 -40.38857 -39.35921 -36.26009 -35.21065 -34.50164 -33.92550 -33.27282 -32.86125 -29.55974 -28.78893 -27.31546 -25.59900 -24.92045 -23.86934 -23.12487 -21.84169 -21.66239 -21.23648 -20.73651 -18.99570 -18.06939 -17.56394 -17.39499 -17.04015 -16.84927 -16.29266 -15.97668 -15.92950 -15.47553 -15.28224 -14.89596 -14.77567 -14.61708 -14.35711 -14.26683 -13.94539 -13.81091 -13.65571 -13.46834 -13.36286 -13.10717 -12.81221 -12.72509 -12.44296 -12.39071 -12.15576 -11.94531 -11.93149 -11.76118 -11.63904 -11.58091 -11.31810 -11.25085 -11.15757 -10.80283 -10.64387 -10.47552 -9.96511 -9.89845 -8.69586 -8.01009 -5.49020 1.36590 1.46999 1.57121 1.63273 2.27877 2.55019 2.77033 3.21867 3.31160 3.43815 3.59326 3.75394 3.93956 4.05736 4.05955 4.13774 4.18336 4.18414 4.22112 4.29858 4.36180 4.42640 4.47137 4.53171 4.54393 4.73366 4.76764 4.81125 4.83196 4.85436 4.95076 5.00322 5.02697 5.04884 5.08841 5.11785 5.18075 5.20348 5.27182 5.37076 5.40661 5.43431 5.51691 5.55865 5.61960 5.73171 5.98840 6.06295 6.33601 6.66285 7.09711 7.31388 7.77652 8.08019 9.13721 Molecular weight = 324.22amu Principal moments of inertia in cm(-1) A = 0.016464 B = 0.003979 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.238719 B = 7034.804325 C = 7967.243376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.113 4.113 3 C 0.101 3.899 4 H 0.051 0.949 5 O -0.388 6.388 6 C 0.054 3.946 7 C -0.139 4.139 8 C -0.132 4.132 9 H 0.140 0.860 10 C 0.519 3.481 11 O -0.588 6.588 12 N -0.693 5.693 13 C 0.128 3.872 14 C 0.184 3.816 15 H 0.087 0.913 16 C -0.133 4.133 17 C -0.099 4.099 18 C -0.128 4.128 19 C -0.127 4.127 20 C 0.135 3.865 21 N -0.606 5.606 22 C -0.231 4.231 23 H 0.062 0.938 24 C -0.044 4.044 25 N -0.974 5.974 26 Si 0.869 3.131 27 H -0.310 1.310 28 H -0.354 1.354 29 H -0.115 1.115 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.042 0.958 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.069 0.931 37 H 0.105 0.895 38 H 0.048 0.952 39 H 0.411 0.589 40 H 0.029 0.971 41 H 0.073 0.927 42 H 0.030 0.970 43 H 0.073 0.927 44 H 0.057 0.943 45 H 0.076 0.924 46 H 0.052 0.948 47 H 0.069 0.931 48 H 0.074 0.926 49 H 0.090 0.910 50 H 0.014 0.986 51 H 0.046 0.954 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.217 -16.647 -5.897 17.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 C 0.043 3.957 4 H 0.069 0.931 5 O -0.308 6.308 6 C -0.022 4.022 7 C -0.177 4.177 8 C -0.153 4.153 9 H 0.158 0.842 10 C 0.305 3.695 11 O -0.470 6.470 12 N -0.342 5.342 13 C 0.003 3.997 14 C 0.077 3.923 15 H 0.105 0.895 16 C -0.173 4.173 17 C -0.137 4.137 18 C -0.165 4.165 19 C -0.165 4.165 20 C 0.012 3.988 21 N -0.331 5.331 22 C -0.361 4.361 23 H 0.080 0.920 24 C -0.237 4.237 25 N -0.621 5.621 26 Si 0.706 3.294 27 H -0.240 1.240 28 H -0.288 1.288 29 H -0.038 1.038 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.124 0.876 38 H 0.067 0.933 39 H 0.247 0.753 40 H 0.048 0.952 41 H 0.091 0.909 42 H 0.049 0.951 43 H 0.092 0.908 44 H 0.076 0.924 45 H 0.095 0.905 46 H 0.070 0.930 47 H 0.088 0.912 48 H 0.093 0.907 49 H 0.108 0.892 50 H 0.031 0.969 51 H 0.064 0.936 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.509 -16.646 -5.362 17.496 hybrid contribution 0.837 2.090 -0.047 2.252 sum 1.346 -14.555 -5.409 15.586 Atomic orbital electron populations 1.21668 0.94705 1.02298 1.01550 1.21607 0.97435 0.93091 1.02943 1.22748 0.91354 0.95122 0.86470 0.93084 1.88369 1.42655 1.59822 1.39936 1.23210 0.86330 0.94462 0.98206 1.23008 1.01536 0.94785 0.98392 1.22996 0.97768 1.01025 0.93514 0.84198 1.20513 0.82556 0.75377 0.91005 1.90649 1.55933 1.52384 1.48013 1.45743 1.06403 1.72386 1.09698 1.21482 0.95709 0.99892 0.82630 1.20671 0.90027 0.89932 0.91703 0.89534 1.21295 0.97365 1.00707 0.97952 1.20291 0.94109 0.99049 1.00232 1.21449 0.99866 0.99339 0.95814 1.21847 0.97800 1.01562 0.95278 1.21667 0.86109 0.96377 0.94647 1.43978 1.20410 1.11458 1.57213 1.18868 0.90745 0.83774 1.42757 0.92011 1.26114 1.01789 0.95785 1.00007 1.69968 1.36792 0.97881 1.57419 0.87904 0.85131 0.80362 0.76023 1.24035 1.28774 1.03767 0.90981 0.92462 0.93860 0.91073 0.89705 0.88280 0.91321 0.87610 0.93271 0.75320 0.95244 0.90911 0.95081 0.90822 0.92428 0.90536 0.93010 0.91187 0.90722 0.89163 0.96893 0.93572 0.94298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 9.83 71.98 0.71 -2.46 16 2 C -0.11 -2.67 5.68 30.59 0.17 -2.50 16 3 C 0.10 2.90 2.57 31.26 0.08 2.99 16 4 H 0.05 1.82 7.38 -2.39 -0.02 1.80 16 5 O -0.39 -10.93 10.69 -148.98 -1.59 -12.52 16 6 C 0.05 1.33 7.79 72.45 0.56 1.90 16 7 C -0.14 -3.91 6.49 31.86 0.21 -3.71 16 8 C -0.13 -3.59 2.90 -10.08 -0.03 -3.62 16 9 H 0.14 2.87 8.06 -2.39 -0.02 2.85 16 10 C 0.52 17.94 7.16 87.66 0.63 18.57 16 11 O -0.59 -24.84 15.72 -3.03 -0.05 -24.89 16 12 N -0.69 -22.70 4.24 -463.05 -1.96 -24.66 16 13 C 0.13 4.41 4.37 86.38 0.38 4.79 16 14 C 0.18 5.66 2.19 45.99 0.10 5.76 16 15 H 0.09 2.14 8.06 -2.39 -0.02 2.12 16 16 C -0.13 -3.91 5.06 29.39 0.15 -3.77 16 17 C -0.10 -2.43 5.16 28.61 0.15 -2.28 16 18 C -0.13 -3.52 4.70 29.76 0.14 -3.38 16 19 C -0.13 -3.18 4.85 30.23 0.15 -3.03 16 20 C 0.13 4.47 5.41 86.49 0.47 4.94 16 21 N -0.61 -22.77 1.64 -674.25 -1.11 -23.87 16 22 C -0.23 -11.60 8.83 84.03 0.74 -10.86 16 23 H 0.06 3.52 5.78 -2.92 -0.02 3.50 16 24 C -0.04 -2.47 5.50 84.86 0.47 -2.00 16 25 N -0.97 -61.93 13.97 21.65 0.30 -61.62 16 26 Si 0.87 40.84 23.40 68.60 1.61 42.45 16 27 H -0.31 -14.92 7.11 99.48 0.71 -14.22 16 28 H -0.35 -18.77 7.11 99.48 0.71 -18.06 16 29 H -0.11 -4.21 1.49 99.48 0.15 -4.07 16 30 H 0.07 1.26 8.14 -2.39 -0.02 1.25 16 31 H 0.06 1.27 7.91 -2.39 -0.02 1.25 16 32 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.10 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.11 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.05 1.77 8.03 -2.39 -0.02 1.75 16 39 H 0.41 12.23 8.07 -92.71 -0.75 11.48 16 40 H 0.03 1.30 7.06 -2.39 -0.02 1.29 16 41 H 0.07 2.26 8.14 -2.38 -0.02 2.24 16 42 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.07 1.85 8.11 -2.39 -0.02 1.83 16 44 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.08 1.49 7.35 -2.39 -0.02 1.47 16 46 H 0.05 1.86 4.49 -2.39 -0.01 1.85 16 47 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 48 H 0.07 1.67 8.11 -2.39 -0.02 1.65 16 49 H 0.09 1.79 7.31 -2.39 -0.02 1.77 16 50 H 0.01 0.53 1.52 -2.39 0.00 0.52 16 51 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 52 H 0.25 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -72.65 377.10 1.86 -70.79 By element: Atomic # 1 Polarization: 33.41 SS G_CDS: -0.41 Total: 33.00 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 5.07 Total: 1.32 kcal Atomic # 7 Polarization: -107.39 SS G_CDS: -2.77 Total: -110.16 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -1.64 Total: -37.40 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 1.61 Total: 42.45 kcal Total: -72.65 1.86 -70.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968955527.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.017 kcal (2) G-P(sol) polarization free energy of solvation -72.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds